mRNA_P-wetherbeei_contig1549.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1549.1.2
Unique NamemRNA_P-wetherbeei_contig1549.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Match: A0A0D9V7U5_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9V7U5_9ORYZ)

HSP 1 Score: 87.8 bits (216), Expect = 1.970e-18
Identity = 72/165 (43.64%), Postives = 91/165 (55.15%), Query Frame = 1
Query:    1 MGSVFGRTGISVENGLSPKYFTLAQRAGYEARWYNPYIVAEV----AMSEGNTNDAFSVLANYIGVFGAPKNLKDNGAEAISMTAPVVM----EVRSCLPRNCFLSNSCESPAPHPEXXXXXXXXXXEAAAASSGRRMAFIMPSKYEKLEHLPRPTDPRVLLREV 471
            MG V G+  I+VE   +PK+  +   AGYE R Y P +VAEV    A  +G+ +  F+ LANYIG  G P+N K    E I MTAPV+     E            +S E       XXXXXXXX  EAAA +    M F++PSKY K E  PRPTD RV++RE+
Sbjct:    1 MGMVLGK--ITVE---TPKHEVVHTGAGYEVRKYPPCVVAEVTYDPAEMKGDRDGGFTTLANYIGALGRPQNTKP---EKIDMTAPVITTSGAEXXXXXXXXXXXXSSGEXXXXXXXXXXXXXXXGGEAAAGAGKMTMQFLLPSKYSKAEEAPRPTDERVVVREI 157          
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Match: UPI00129D999E (heme-binding-like protein At3g10130, chloroplastic n=1 Tax=Nymphaea colorata TaxID=210225 RepID=UPI00129D999E)

HSP 1 Score: 82.8 bits (203), Expect = 1.490e-16
Identity = 70/162 (43.21%), Postives = 92/162 (56.79%), Query Frame = 1
Query:    1 MGSVFGRTGISVENGLSPKYFTLAQRAGYEARWYNPYIVAEVAMS----EGNTNDAFSVLANYIGVFGAPKNLKDNGAEAISMTAPVVMEVRSCLPRNCFLSNSCESPAPHPEXXXXXXXXXXEAAAASSGRRMAFIMP-SKYEKLEHLPRPTDPRVLLREV 471
            MG V G+  I+VE   +PKY  + + A YE R Y P I+AEV       +G+ +  F +LANYIG  G P+N K    E I+MTAPV+ +  S                P P XXXXXXXXXX +        M F++P SKY KLE +PRPTDPRV++++V
Sbjct:    1 MGLVLGK--ITVE---TPKYQVVNKTAHYEIRKYEPSIIAEVTYDPKDMKGDPDGGFMILANYIGALGNPQNTKP---EKIAMTAPVITQ-ESAXXXXXXXXXXXXXAKPQPXXXXXXXXXXXXSDEGKKLVTMQFVLPGSKYSKLEDVPRPTDPRVVIKQV 153          
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Match: A0A1E7FPZ4_9STRA (SOUL heme-binding protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPZ4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.370e-16
Identity = 55/161 (34.16%), Postives = 80/161 (49.69%), Query Frame = 1
Query:    1 MGSVFGRTGISVENGLSPKYFTLAQRAG----YEARWYNPYIVAEVAMSEGNTNDAFSVLANYIGVFGAPKNLKDNGAEAISMTAPVVMEVRSCLPRNCFLSNSCESPAPHPEXXXXXXXXXXEAAAASSGRRMAFIMPSKYEKLEHLPRPTDPRVLLREV 471
            MGSVFG+     E  L P++ T+ +R      Y+ R Y     AE+    G T+  F  LA YIGVFG+P+N    G EA++MTAPV ME R   P         E                    +   G++M F +PS+Y++LE +P+PT+P + + E+
Sbjct:    1 MGSVFGK-----ETVLEPQFKTVLERTSVATTYQVREYGKRFAAEIDYGTGGTSSPFQGLARYIGVFGSPQN---EGKEAMAMTAPVSME-RKGTPMXXXXXXXXEK----------------NNQSEGGGKKMKFFLPSEYDELEKIPKPTNPNIKIVEI 136          
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Match: Q8LQ41_ORYSJ (Os01g0850900 protein n=7 Tax=Oryza TaxID=4527 RepID=Q8LQ41_ORYSJ)

HSP 1 Score: 79.7 bits (195), Expect = 2.130e-15
Identity = 68/161 (42.24%), Postives = 85/161 (52.80%), Query Frame = 1
Query:    1 MGSVFGRTGISVENGLSPKYFTLAQRAGYEARWYNPYIVAEV----AMSEGNTNDAFSVLANYIGVFGAPKNLKDNGAEAISMTAPVVMEVRSCLPRNCFLSNSCESPAPHPEXXXXXXXXXXEAAAASSGRRMAFIMPSKYEKLEHLPRPTDPRVLLREV 471
            MG V G+  I+VE   +PK+  L   AGYE R Y P +VAEV    A  +G+ +  F+VL NYIG  G P+N K    E I MTAPV+                         XXXXXXXX  E +       M F++PSKY K+E  PRPTD RV+LR+V
Sbjct:    1 MGMVLGK--ITVE---TPKHEVLHTGAGYEVRKYPPCVVAEVTYDPAEMKGDRDGGFTVLGNYIGALGNPQNTKP---EKIDMTAPVITSGEXXXXXXXXXXXXXXXXXXX--XXXXXXXXAEERSQGKGQMTMQFLLPSKYSKVEEAPRPTDERVVLRQV 151          
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Match: A0A3B6GX01_WHEAT (Uncharacterized protein n=3 Tax=Triticinae TaxID=1648030 RepID=A0A3B6GX01_WHEAT)

HSP 1 Score: 79.7 bits (195), Expect = 2.460e-15
Identity = 65/146 (44.52%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   49 SPKYFTLAQRAGYEARWYNPYIVAEVAMS----EGNTNDAFSVLANYIGVFGAPKNLKDNGAEAISMTAPVVMEVRSCLPRNCFLSNSCESPAPHPEXXXXXXXXXXEAAAASSGR-RMAFIMPSKYEKLEHLPRPTDPRVLLREV 471
            +PK+  L    GYE R Y P + AEV       +G+ +  F VLANYIG FG P+N K    EAI+MTAPV+                    +    XXXXXXXXXXE     +G+  M F++PSKY K E  PRPTD RV+LREV
Sbjct:   17 TPKHEVLHTGDGYEIRKYPPCVAAEVTYDPKEMKGDRDGGFQVLANYIGAFGKPQNTKP---EAIAMTAPVITSSGGGEAEXXXXXXXXXXSSEPXXXXXXXXXXXXEGREEQAGKVTMQFLLPSKYAKAEEAPRPTDERVVLREV 159          
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Match: K3XLR4_SETIT (Uncharacterized protein n=11 Tax=Panicoideae TaxID=147369 RepID=K3XLR4_SETIT)

HSP 1 Score: 78.6 bits (192), Expect = 6.400e-15
Identity = 71/167 (42.51%), Postives = 88/167 (52.69%), Query Frame = 1
Query:    1 MGSVFGRTGISVENGLSPKYFTLAQRAGYEARWYNPYIVAEVAMS----EGNTNDAFSVLANYIGVFGAPKNLKDNGAEAISMTAPVVM------EVRSCLPRNCFLSNSCESPAPHPEXXXXXXXXXXEAAAASSGRRMAFIMPSKYEKLEHLPRPTDPRVLLREV 471
            MG V G+  I+VE   +PK+  L   AGYE R Y P + AE        +G+ +  F+VLANYIG  G P+N K    E I+MTAPV+       E  S                  PE XXXXXXXXX+   A     M F++PSKY K E  PRPTD RV++REV
Sbjct:    1 MGMVLGK--ITVE---TPKHEVLHTGAGYEIRRYPPCVAAEFTYDPKEWKGDPDGGFTVLANYIGALGKPQNTKP---EKIAMTAPVITSGAGDGEASSXXXXXXXXXXXXGG---EPEPXXXXXXXXXDDQQAPGKVTMQFLLPSKYAKAEDAPRPTDERVVIREV 156          
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Match: A0A3B6FTC8_WHEAT (Uncharacterized protein n=6 Tax=Triticeae TaxID=147389 RepID=A0A3B6FTC8_WHEAT)

HSP 1 Score: 78.2 bits (191), Expect = 9.430e-15
Identity = 65/146 (44.52%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   49 SPKYFTLAQRAGYEARWYNPYIVAEVAMS----EGNTNDAFSVLANYIGVFGAPKNLKDNGAEAISMTAPVVMEVRSC-LPRNCFLSNSCESPAPHPEXXXXXXXXXXEAAAASSGRRMAFIMPSKYEKLEHLPRPTDPRVLLREV 471
            +PK+  L    GYE R Y P + AEV       +G+ +  F VLANYIG FG P+N K    EAI+MTAPV+                   S  P   XXXXXXXXX      +S   M F++PSKY K E  PRPTD RV+LREV
Sbjct:   17 TPKHEVLHTGDGYEIRKYPPCVAAEVTYDPKEMKGDRDGGFQVLANYIGAFGKPQNTKP---EAIAMTAPVITSSGGGEAEXXXXXXXXXXSSEPXXXXXXXXXXXXEGREEKASKVTMQFLLPSKYTKAEEAPRPTDERVVLREV 159          
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Match: UPI001F5CDDB5 (heme-binding-like protein At3g10130, chloroplastic n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CDDB5)

HSP 1 Score: 77.4 bits (189), Expect = 2.140e-14
Identity = 64/152 (42.11%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   49 SPKYFTLAQRAGYEARWYNPYIVAEVAMS----EGNTNDAFSVLANYIGVFGAPKNLKDNGA------EAISMTAPVVMEVRSCLPRNCFLSNSCESPAPHPEXXXXXXXXXXEAAAASSGR-RMAFIMPSKYEKLEHLPRPTDPRVLLREV 471
            +PK+  L   AGYE R Y P ++AEV       +G+ +  F +LA YIGVFG P+N K          E I+MTAPV+                    +    XXXXXXXXXXE     +G+  M F++PSKY K E  PRPTD RV+LREV
Sbjct:   17 TPKHEVLRTGAGYEIRKYPPCVLAEVTYDPKDMKGDRDGGFQLLAKYIGVFGKPQNTKPEKIASGGEPEEIAMTAPVITSSGXXXXXXXXXXXXXXXSSEXXXXXXXXXXXXXEGREEQAGKVTMQFLLPSKYGKAEEAPRPTDERVVLREV 168          
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Match: A0A0E0N513_ORYRU (PfkB domain-containing protein n=1 Tax=Oryza rufipogon TaxID=4529 RepID=A0A0E0N513_ORYRU)

HSP 1 Score: 79.3 bits (194), Expect = 2.820e-14
Identity = 68/161 (42.24%), Postives = 84/161 (52.17%), Query Frame = 1
Query:    1 MGSVFGRTGISVENGLSPKYFTLAQRAGYEARWYNPYIVAEV----AMSEGNTNDAFSVLANYIGVFGAPKNLKDNGAEAISMTAPVVMEVRSCLPRNCFLSNSCESPAPHPEXXXXXXXXXXEAAAASSGRRMAFIMPSKYEKLEHLPRPTDPRVLLREV 471
            MG V G+  I+VE   +PK+  L   AGYE R Y P +VAEV    A  +G+ +  F+VL NYIG  G P+N K    E I MTAPV+                         XXXXXXXX  E         M F++PSKY K+E  PRPTD RV+LR+V
Sbjct:    1 MGMVLGK--ITVE---TPKHEVLHTGAGYEVRKYPPCVVAEVTYDPAEMKGDRDGGFTVLGNYIGALGNPQNTKP---EKIDMTAPVITSGEXXXXXXXXXXXXXXXXXXX--XXXXXXXXAEERGQGKGQMTMQFLLPSKYSKVEEAPRPTDERVVLRQV 151          
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Match: I1HTF3_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HTF3_BRADI)

HSP 1 Score: 76.6 bits (187), Expect = 3.660e-14
Identity = 61/147 (41.50%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   49 SPKYFTLAQRAGYEARWYNPYIVAEVAMS----EGNTNDAFSVLANYIGVFGAPKNLKDNGAEAISMTAPVVMEVRSCLPRNCFLSNSCESPAPHPEXXXXXXXXXXEAAAASSGRR--MAFIMPSKYEKLEHLPRPTDPRVLLREV 471
            +PK+  L   AGYE R Y P + AEV       +G+ +  F VLA YIGVFG P+N K    E I+MT+PV+    S   +               E  XXXXXXXX  A   +  +  M F++PSKY K E  P+PTD RV+LR+V
Sbjct:   17 TPKHEVLHTGAGYEIRKYPPCVAAEVVYDPKDMKGDPDGGFQVLAAYIGVFGKPQNTKP---EKIAMTSPVITSASSGPGKAXXXXXXXXXXXSSVEPEXXXXXXXXXXADGGNNNKVTMQFLLPSKYSKAEEAPKPTDERVVLRDV 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1549.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D9V7U5_9ORYZ1.970e-1843.64Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
UPI00129D999E1.490e-1643.21heme-binding-like protein At3g10130, chloroplastic... [more]
A0A1E7FPZ4_9STRA2.370e-1634.16SOUL heme-binding protein n=1 Tax=Fragilariopsis c... [more]
Q8LQ41_ORYSJ2.130e-1542.24Os01g0850900 protein n=7 Tax=Oryza TaxID=4527 RepI... [more]
A0A3B6GX01_WHEAT2.460e-1544.52Uncharacterized protein n=3 Tax=Triticinae TaxID=1... [more]
K3XLR4_SETIT6.400e-1542.51Uncharacterized protein n=11 Tax=Panicoideae TaxID... [more]
A0A3B6FTC8_WHEAT9.430e-1544.52Uncharacterized protein n=6 Tax=Triticeae TaxID=14... [more]
UPI001F5CDDB52.140e-1442.11heme-binding-like protein At3g10130, chloroplastic... [more]
A0A0E0N513_ORYRU2.820e-1442.24PfkB domain-containing protein n=1 Tax=Oryza rufip... [more]
I1HTF3_BRADI3.660e-1441.50Uncharacterized protein n=1 Tax=Brachypodium dista... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1549contigP-wetherbeei_contig1549:238..771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog77586.LPERR01G32130.1
PFAMsSOUL
Model size471
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.23e-19
EggNOG OGs28MKZ@1|root,2QU4S@2759|Eukaryota,37MY7@33090|Viridiplantae,3GDNS@35493|Streptophyta,3KWTT@4447|Liliopsida,3IARG@38820|Poales
Ec32 ortholog descriptionRegulatory factor, effector binding domain
Ec32 orthologEc-24_002220.1
DescriptionSOUL heme-binding protein
Cds size471
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.9554627-CDS-P-wetherbeei_contig1549:237..5521683186057.9554627-CDS-P-wetherbeei_contig1549:237..552Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1549 238..552 +
1683186057.9664314-CDS-P-wetherbeei_contig1549:615..7711683186057.9664314-CDS-P-wetherbeei_contig1549:615..771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1549 616..771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1549.1.2prot_P-wetherbeei_contig1549.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1549 238..771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1549.1.2

>prot_P-wetherbeei_contig1549.1.2 ID=prot_P-wetherbeei_contig1549.1.2|Name=mRNA_P-wetherbeei_contig1549.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MGSVFGRTGISVENGLSPKYFTLAQRAGYEARWYNPYIVAEVAMSEGNTN
DAFSVLANYIGVFGAPKNLKDNGAEAISMTAPVVMEVRSCLPRNCFLSNS
CESPAPHPEAVSMTAPVVTEAAAASSGRRMAFIMPSKYEKLEHLPRPTDP
RVLLREV
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mRNA from alignment at P-wetherbeei_contig1549:238..771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1549.1.2 ID=mRNA_P-wetherbeei_contig1549.1.2|Name=mRNA_P-wetherbeei_contig1549.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig1549:238..771+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTTCCGTGTTCGGACGCACTGGCATCTCGGTGGAAAATGGGCTTTC CCCGAAATATTTTACCCTTGCGCAGAGAGCGGGCTACGAAGCGCGGTGGT ACAACCCCTATATTGTCGCTGAGGTGGCGATGAGCGAAGGTAACACCAAC GATGCGTTTTCGGTGCTCGCAAACTACATCGGAGTCTTTGGCGCACCAAA GAATCTAAAAGACAATGGCGCGGAAGCGATCTCGATGACGGCCCCGGTGG TGATGGAGGTGCGCTCGTGCCTTCCTCGGAATTGTTTTCTTTCCAACAGC TGCGAGTCACCTGCCGTAACACAGATGCTCATATTCTGACTCTTTTCATT CTTCCCCGTTTTGCTCACCTTTCCACAGCCACACCCGGAGGCGGTCAGCA TGACGGCACCCGTGGTCACCGAGGCGGCGGCGGCTTCGTCGGGCCGCCGG ATGGCATTCATCATGCCGAGCAAGTATGAAAAACTGGAACACCTCCCCCG TCCGACGGATCCGCGGGTCTTGCTCCGTGAGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1549:238..771+

>mRNA_P-wetherbeei_contig1549.1.2 ID=mRNA_P-wetherbeei_contig1549.1.2|Name=mRNA_P-wetherbeei_contig1549.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig1549:238..771+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTTCCGTGTTCGGACGCACTGGCATCTCGGTGGAAAATGGGCTTTC
CCCGAAATATTTTACCCTTGCGCAGAGAGCGGGCTACGAAGCGCGGTGGT
ACAACCCCTATATTGTCGCTGAGGTGGCGATGAGCGAAGGTAACACCAAC
GATGCGTTTTCGGTGCTCGCAAACTACATCGGAGTCTTTGGCGCACCAAA
GAATCTAAAAGACAATGGCGCGGAAGCGATCTCGATGACGGCCCCGGTGG
TGATGGAGGTGCGCTCGTGCCTTCCTCGGAATTGTTTTCTTTCCAACAGC
TGCGAGTCACCTGCCCCACACCCGGAGGCGGTCAGCATGACGGCACCCGT
GGTCACCGAGGCGGCGGCGGCTTCGTCGGGCCGCCGGATGGCATTCATCA
TGCCGAGCAAGTATGAAAAACTGGAACACCTCCCCCGTCCGACGGATCCG
CGGGTCTTGCTCCGTGAGGTA
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