mRNA_P-wetherbeei_contig15467.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15467.1.2
Unique NamemRNA_P-wetherbeei_contig15467.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Match: A0A3S3NSL7_9MAGN (50S ribosomal protein L16 n=114 Tax=Mesangiospermae TaxID=1437183 RepID=A0A3S3NSL7_9MAGN)

HSP 1 Score: 285 bits (729), Expect = 2.280e-94
Identity = 131/231 (56.71%), Postives = 188/231 (81.39%), Query Frame = 1
Query:    1 MTGLAYRGSAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWIRVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVAREAMRLAMFKLPMRTRFLV----REETVMVQQESRLRVADNSGAKELLCIRVLGGSTRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIRFDDNAAVIIREDLNPRGTRIFGPVARE 681
            M G++YRG+ + FG++ALQ+LEP+W+T+RQIEA R AMTR+ +RGGK+W+R+FPDK VT +P ETRMGSGKGSPE+WV+VVKPGRIL+E+ GV E VAR A+ +A  K+P+RT+F++    +E+  M+Q ++ L VADNSGA+EL+CIR++G S +RYA +GDVIVA +K+A P   +++ +V++AV+VRT   ++R +G  IR+DDNAAV+I ++ NP+GTR+FG +ARE
Sbjct:    1 MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVSVVKPGRILYEMGGVSETVARAAISIAACKMPIRTQFIIAADSKEKNDMIQPQTHLNVADNSGARELMCIRIIGASNQRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 231          
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Match: A0A5A7QC00_STRAF (50S ribosomal protein L16 n=2 Tax=Striga TaxID=4169 RepID=A0A5A7QC00_STRAF)

HSP 1 Score: 278 bits (711), Expect = 1.280e-91
Identity = 130/232 (56.03%), Postives = 185/232 (79.74%), Query Frame = 1
Query:    1 MTGLAYRGSAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWIRVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVAREAMRLAMFKLPMRTRFLVREETV-----MVQQESRLRVADNSGAKELLCIRVLGGSTRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIRFDDNAAVIIREDLNPRGTRIFGPVARE 681
            M G++YRG+ + FG++ALQ+LEP+W+T+RQIEA R AMTR+ +RGGK+W+R+FPDK VT + AETRMGSGKG+PE+WVAVVKPGRIL+E+ GV E +AR A+ +A  K+P+RT+F+     +     M+Q ++ L VADNSGA+EL+CIR++G S RRYA +GDVIVA +K+A P  +++K +V++AV+VRT   ++R +G  IR+DDNAAV+I ++ NP+GTRIFG + +E
Sbjct:    1 MKGISYRGNHICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTIRSAETRMGSGKGNPEYWVAVVKPGRILYEMGGVTENIARRAILIAASKMPIRTQFIFSGSKIAYKINMIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPKMSLEKSEVIRAVIVRTCKELKRNNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPQE 232          
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Match: A0A0D9XYR4_9ORYZ (Ribosomal_L16 domain-containing protein n=111 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0D9XYR4_9ORYZ)

HSP 1 Score: 240 bits (612), Expect = 6.010e-77
Identity = 121/228 (53.07%), Postives = 166/228 (72.81%), Query Frame = 1
Query:    1 MTGLAYRGSAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWIRVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVAREAMRLAMFKLPMRTRFLVREETVMVQQESRLRVADNSGAKELLCIRVLGG-STRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIRFDDNAAVIIREDLNPRGTRIFGPVARE 681
            M G +YRG+ + FG++ALQ+LEP+W+TARQIEA R AMTR+ +RGGK+ +R+FPDK VT +P ETRMGSGKGSPE+WVAVVKPGRIL+E+ GV E VAR A+ +A  K+P+R                     +NSGA++L+CIRV+G  S +RYA +GD+IVA +K A P   +++ +V++AV+VRT    +  D   IR+DDNAAVII ++ NP+GTR+FG +A+E
Sbjct:    1 MKGKSYRGNRICFGRYALQALEPTWITARQIEAGRRAMTRYARRGGKICVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVFETVARAAISIAASKMPIR---------------------NNSGARKLMCIRVIGAASNQRYARIGDIIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKYEDRIIIRYDDNAAVIIDQEGNPKGTRVFGAIAKE 207          
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Match: A0A444Z5W7_ARAHY (Ribosomal_L16 domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444Z5W7_ARAHY)

HSP 1 Score: 245 bits (626), Expect = 3.380e-76
Identity = 114/227 (50.22%), Postives = 166/227 (73.13%), Query Frame = 1
Query:    1 MTGLAYRGSAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWIRVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVAREAMRLAMFKLPMRTRFLVREETVMVQQESRLRVADNSGAKELLCIRVLGGSTRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIRFDDNAAVIIREDLNPRGTRIFGPVARE 681
            M G++YRG+ + FG++ALQ+LEP+W+T RQIEA R  M+R+++RGG++W+R+FPDK VT +P ETRMGSGKGSPE+WVAVVKP RIL+EI G                              M+Q ++ L VADNSGA++L+CIR++G   RRYAS+GD++VA +K+A P  ++++ +V++AV+VRT   ++R++G  I++DDNAAV+I ++ NP+GTRIFG +ARE
Sbjct:    1 MKGISYRGNHICFGRYALQALEPAWITYRQIEAGRRVMSRNVRRGGQIWVRIFPDKLVTIRPTETRMGSGKGSPEYWVAVVKPSRILYEIGG----------------------------NDMIQPQTHLNVADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARE 199          
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Match: A0A1B0C7G2_9MUSC (39S ribosomal protein L16, mitochondrial n=2 Tax=Glossina TaxID=7393 RepID=A0A1B0C7G2_9MUSC)

HSP 1 Score: 235 bits (600), Expect = 1.310e-74
Identity = 121/221 (54.75%), Postives = 161/221 (72.85%), Query Frame = 1
Query:   25 SAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWIRVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVAREAMRLAMFKLPMRTRFLVREE-TVMVQQESRLRVADNSGAKELLCIRVLGGSTRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIRFDDNAAVIIREDLN-PRGTRIFGPVARE 681
            S + FG+F L+++    +T+RQIE+AR AM R IKR GK+WI +FPDK +TKKP E RMG GKG+ E+WVA+V+PG+IL+EI  V EE+AR A +LA  KLP+ T F+ +     M+Q ++ L VADNSGA+ ++CI+VLGGS RRYA + D+I  A+K A P   VKKG+V+KAV+VRT+  + R DGS IRFD NA V++ +    P GTRIFGPV RE
Sbjct:   24 SEINFGKFGLKAISRGRLTSRQIESARRAMARSIKRQGKIWICIFPDKPITKKPLEVRMGKGKGNVEYWVALVQPGKILYEIDDVSEEIARSAFKLATAKLPITTTFVTKMVMNNMIQVQTVLSVADNSGARSVMCIKVLGGSRRRYAKIADIIKIAIKDAIPRTKVKKGEVLKAVIVRTRKALVRPDGSVIRFDKNACVLLNDTTEQPIGTRIFGPVTRE 244          
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Match: A0A5N6PBH8_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PBH8_9ASTR)

HSP 1 Score: 227 bits (579), Expect = 8.690e-72
Identity = 111/221 (50.23%), Postives = 152/221 (68.78%), Query Frame = 1
Query:    1 MTGLAYRGSAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWIRVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVAREAMRLAMFKLPMRTRFLVREETVMVQQESRLRVADNSGAKELLCIRVLGGSTRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIRFDDNAAVIIREDLNPRGTRIF 663
            M G++YRG+ + FG++ALQ+LEP+W+T+RQIEA R AMTR+ +RGGK+W+R+FPDK VT +PAETRMGSGKGSPE+WVAVVKPGRIL+E+                                           DNSGA+EL+CIR++G S RRYA +GDVIVA +K A P   +++ +VV+AV+VRT   ++R +G  IR+DDNAAV+I ++ NP+GTR++
Sbjct:    1 MKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEM-------------------------------------------DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVY 178          
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Match: A0A5N6PW49_9ASTR (Ribosomal_L16 domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PW49_9ASTR)

HSP 1 Score: 237 bits (605), Expect = 2.000e-71
Identity = 116/227 (51.10%), Postives = 157/227 (69.16%), Query Frame = 1
Query:    1 MTGLAYRGSAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWIRVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVAREAMRLAMFKLPMRTRFLVREETVMVQQESRLRVADNSGAKELLCIRVLGGSTRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIRFDDNAAVIIREDLNPRGTRIFGPVARE 681
            M G++YRG+ + FG++ALQ+LEP+W+T+RQIEA R AMTR+ +RGGK+W+R+FPDK VT +PAETRMGSGKGSPE+WVAVVKPGRIL+E+                                           DNSGA+EL+CIR++G S RRYA +GDVIVA +K A P   +++ +VV+AV+VRT   ++R +G  IR+DDNAAV+I ++ NP+GTR+FG +ARE
Sbjct:    1 MKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEL-------------------------------------------DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 184          
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Match: A0A1A9UKH8_GLOAU (30S ribosomal protein S3, chloroplastic n=2 Tax=cellular organisms TaxID=131567 RepID=A0A1A9UKH8_GLOAU)

HSP 1 Score: 239 bits (610), Expect = 3.490e-70
Identity = 123/221 (55.66%), Postives = 165/221 (74.66%), Query Frame = 1
Query:   25 SAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWIRVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVAREAMRLAMFKLPMRTRFLVREETV-MVQQESRLRVADNSGAKELLCIRVLGGSTRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIRFDDNAAVIIREDLN-PRGTRIFGPVARE 681
            S + FG+F L++++   +T+RQIE+AR AM R IKR GK+WI +FPDK +TKKP E RMG GKG+ E+WVA+V+PG+IL+EI  V EEVAR A +LA  KLP+ T F+ +     M+Q ++ L VADNSGA+ ++CI+VLGGS RRYA + D+I  A+K+A P + VKKG+V+KAV+VRT+  + RADGS IRFD NA V++ +    P GTRIFGPV RE
Sbjct:  639 SKIHFGKFGLKAVDRGRLTSRQIESARRAMARSIKRQGKIWICIFPDKPITKKPLEVRMGKGKGNVEYWVALVQPGKILYEIDDVSEEVARSAFKLATAKLPITTTFVTKMVMYKMIQVQTVLSVADNSGARSVMCIKVLGGSRRRYARISDIIKIAIKEAIPRSKVKKGEVLKAVIVRTRKALVRADGSVIRFDKNACVLLNDTTEQPIGTRIFGPVTRE 859          
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Match: A0A6P4D326_ARADU (uncharacterized protein LOC107465507 n=6 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A6P4D326_ARADU)

HSP 1 Score: 221 bits (563), Expect = 6.330e-70
Identity = 105/227 (46.26%), Postives = 154/227 (67.84%), Query Frame = 1
Query:    1 MTGLAYRGSAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWIRVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVAREAMRLAMFKLPMRTRFLVREETVMVQQESRLRVADNSGAKELLCIRVLGGSTRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIRFDDNAAVIIREDLNPRGTRIFGPVARE 681
            M G++YRG+ + FG++ALQ+LEP+W+T+RQIEA R AM+R+++RGG++W+R+FPDK VT +P ETRMGSGKGSPE+WVAVVKP                                                 ADNSGA++L+CIR++G   RRYAS+GD++VA +K+A P  ++++ +V++AV+VRT   ++R++G  I++DDNAAV+I ++ NP+GTRIFG +ARE
Sbjct:    1 MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKP-------------------------------------------------ADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARE 178          
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Match: A0A067KET2_JATCU (Ribosomal_L16 domain-containing protein n=2 Tax=Malpighiales TaxID=3646 RepID=A0A067KET2_JATCU)

HSP 1 Score: 220 bits (561), Expect = 1.230e-69
Identity = 110/227 (48.46%), Postives = 149/227 (65.64%), Query Frame = 1
Query:    1 MTGLAYRGSAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWIRVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVAREAMRLAMFKLPMRTRFLVREETVMVQQESRLRVADNSGAKELLCIRVLGGSTRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIRFDDNAAVIIREDLNPRGTRIFGPVARE 681
            M G A+R + + FG++ALQ+LEPSW+T+RQIEA R  MTR+ +RGGK+WIR+FPDK +T +P ETRMGSGKGSPE+WVAVVKP                                                  DNSGA+EL+CIR++G S RRYA +GDVIVA +K+ATP + +++ +V++AV+VRT   ++R +G  IR+DDNAAV+I ++ NP+GTRIFG +ARE
Sbjct:    1 MKGKAFRANRISFGRYALQALEPSWITSRQIEAGRRTMTRNARRGGKIWIRIFPDKPITLRPTETRMGSGKGSPEYWVAVVKP--------------------------------------------------DNSGARELMCIRIMGTSNRRYAHIGDVIVAVIKEATPNSPLERSEVIRAVIVRTCKELKRDNGIIIRYDDNAAVVIDQEGNPKGTRIFGAIARE 177          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15467.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3S3NSL7_9MAGN2.280e-9456.7150S ribosomal protein L16 n=114 Tax=Mesangiosperma... [more]
A0A5A7QC00_STRAF1.280e-9156.0350S ribosomal protein L16 n=2 Tax=Striga TaxID=416... [more]
A0A0D9XYR4_9ORYZ6.010e-7753.07Ribosomal_L16 domain-containing protein n=111 Tax=... [more]
A0A444Z5W7_ARAHY3.380e-7650.22Ribosomal_L16 domain-containing protein n=1 Tax=Ar... [more]
A0A1B0C7G2_9MUSC1.310e-7454.7539S ribosomal protein L16, mitochondrial n=2 Tax=G... [more]
A0A5N6PBH8_9ASTR8.690e-7250.23Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A5N6PW49_9ASTR2.000e-7151.10Ribosomal_L16 domain-containing protein n=1 Tax=Mi... [more]
A0A1A9UKH8_GLOAU3.490e-7055.6630S ribosomal protein S3, chloroplastic n=2 Tax=ce... [more]
A0A6P4D326_ARADU6.330e-7046.26uncharacterized protein LOC107465507 n=6 Tax=50 kb... [more]
A0A067KET2_JATCU1.230e-6948.46Ribosomal_L16 domain-containing protein n=2 Tax=Ma... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15467contigP-wetherbeei_contig15467:2..1204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog40149.OMERI08G16060.1
PFAMsRibosomal_L14,Ribosomal_L16
Model size681
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons2
Evalue9.07e-81
EggNOG OGsCOG0093@1|root,COG0197@1|root,KOG0901@2759|Eukaryota,KOG3422@2759|Eukaryota,37Z8V@33090|Viridiplantae,3GN6D@35493|Streptophyta,3M3MB@4447|Liliopsida,3IP8R@38820|Poales
Description50S ribosomal protein L14, chloroplastic
Cds size681
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.1576965-CDS-P-wetherbeei_contig15467:1..3221683186057.1576965-CDS-P-wetherbeei_contig15467:1..322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15467 2..322 -
1683186057.1748157-CDS-P-wetherbeei_contig15467:844..12041683186057.1748157-CDS-P-wetherbeei_contig15467:844..1204Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15467 845..1204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15467.1.2prot_P-wetherbeei_contig15467.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15467 2..1204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15467.1.2

>prot_P-wetherbeei_contig15467.1.2 ID=prot_P-wetherbeei_contig15467.1.2|Name=mRNA_P-wetherbeei_contig15467.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
MTGLAYRGSAVQFGQFALQSLEPSWVTARQIEAARIAMTRHIKRGGKVWI
RVFPDKSVTKKPAETRMGSGKGSPEFWVAVVKPGRILFEIAGVPEEVARE
AMRLAMFKLPMRTRFLVREETVMVQQESRLRVADNSGAKELLCIRVLGGS
TRRYASVGDVIVAAVKQATPGATVKKGDVVKAVVVRTKNRIRRADGSYIR
FDDNAAVIIREDLNPRGTRIFGPVARE
back to top

mRNA from alignment at P-wetherbeei_contig15467:2..1204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15467.1.2 ID=mRNA_P-wetherbeei_contig15467.1.2|Name=mRNA_P-wetherbeei_contig15467.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1203bp|location=Sequence derived from alignment at P-wetherbeei_contig15467:2..1204- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGCCTGGCCTACCGTGGCAGTGCCGTTCAGTTCGGTCAGTTTGC TCTGCAGTCGCTGGAGCCCAGCTGGGTAACGGCTCGTCAGATCGAAGCCG CGCGTATCGCGATGACCCGTCACATCAAACGTGGCGGTAAGGTTTGGATC CGGGTTTTCCCAGACAAGTCTGTCACCAAGAAGCCGGCGGAAACGCGAAT GGGTTCTGGTAAGGGATCTCCCGAGTTCTGGGTTGCAGTGGTCAAGCCCG GCCGTATTCTCTTCGAGATCGCCGGCGTGCCCGAGGAAGTCGCGCGTGAA GCCATGCGCTTGGCAATGTTCAAGTTGCCTATGCGCACGCGTTTCTTAGT TCGCGAAGAAGTGGGAGCGAACTAACATGGCTCGCAAGAAAGAAAATGCC CTTGAGGGGATTAAATCCCTGGATAAAGCGGGTCTTCGGACGCGTCTGGA GGACTCGAAGCAGGAGCTGTTCAGCATCCGTTTCCAGCTCGCCACTGGCT CTCAGACCGATAGCTCGCAGATTCGCCAGATCAAACGGCGGATTGCTCAA ATTCACACGGTTCTGCGCCAGCAAGAGCTACAGGCCGCGAAGGCCTAGAG GAGACGACGATGAGTCAGGATCAATTAGAACGTGGCCGGCGGAAAGTTAG AATCGGCGTTGTTGTCAGCGACAAAATGGAGAAGACTGTTGTAGTTGCTG TTACCCGTCAGTTCCCGCACCCGCTCTACAAAAAAATCATCAAGCGCACC AAGCGCTACAAAGCTCACGATGAGGAGAATTCTTGCGGTGTAGGCGATCT CGTCCGCATCTCGGAAGCTCGCCCCATCTCAAAGGACAAGCGGTGGCGCG TCCAGTCCATTCTAGAAAAGGCGCGATAGGAGACTGTTATGGTTCAGCAA GAATCTCGTTTAAGAGTAGCCGATAACAGCGGCGCCAAAGAGTTACTTTG CATTCGCGTGCTCGGTGGTTCTACCCGTCGCTACGCCTCAGTTGGCGACG TTATCGTCGCAGCCGTCAAGCAAGCAACGCCTGGCGCAACTGTGAAAAAA GGAGACGTCGTTAAGGCTGTCGTGGTTCGCACCAAGAACCGCATCCGCCG TGCTGACGGTTCCTACATCAGATTTGACGACAATGCAGCGGTCATCATCA GAGAAGACCTGAATCCCCGCGGCACTCGTATCTTCGGACCCGTGGCCCGT GAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15467:2..1204-

>mRNA_P-wetherbeei_contig15467.1.2 ID=mRNA_P-wetherbeei_contig15467.1.2|Name=mRNA_P-wetherbeei_contig15467.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig15467:2..1204- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGCCTGGCCTACCGTGGCAGTGCCGTTCAGTTCGGTCAGTTTGC
TCTGCAGTCGCTGGAGCCCAGCTGGGTAACGGCTCGTCAGATCGAAGCCG
CGCGTATCGCGATGACCCGTCACATCAAACGTGGCGGTAAGGTTTGGATC
CGGGTTTTCCCAGACAAGTCTGTCACCAAGAAGCCGGCGGAAACGCGAAT
GGGTTCTGGTAAGGGATCTCCCGAGTTCTGGGTTGCAGTGGTCAAGCCCG
GCCGTATTCTCTTCGAGATCGCCGGCGTGCCCGAGGAAGTCGCGCGTGAA
GCCATGCGCTTGGCAATGTTCAAGTTGCCTATGCGCACGCGTTTCTTAGT
TCGCGAAGAAACTGTTATGGTTCAGCAAGAATCTCGTTTAAGAGTAGCCG
ATAACAGCGGCGCCAAAGAGTTACTTTGCATTCGCGTGCTCGGTGGTTCT
ACCCGTCGCTACGCCTCAGTTGGCGACGTTATCGTCGCAGCCGTCAAGCA
AGCAACGCCTGGCGCAACTGTGAAAAAAGGAGACGTCGTTAAGGCTGTCG
TGGTTCGCACCAAGAACCGCATCCGCCGTGCTGACGGTTCCTACATCAGA
TTTGACGACAATGCAGCGGTCATCATCAGAGAAGACCTGAATCCCCGCGG
CACTCGTATCTTCGGACCCGTGGCCCGTGAG
back to top