mRNA_P-wetherbeei_contig15415.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15415.2.1
Unique NamemRNA_P-wetherbeei_contig15415.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Match: D7FT96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT96_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.910e-27
Identity = 52/113 (46.02%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 MGAAASTLLLKDALATLKEHDVA--DAAFWDPIWKLQTTPSEIYEILSADDIRRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPFLIESYRDPDSG 333
            MG  AS +  +D LA LK  D+A  DAAFW  +WK +T P +++E++S   +R+L+  RPGNV  L   AV+ L  VV++P P   + A+TAV +LTRV+PF++E+Y DP++G
Sbjct:    1 MGTGASKVAFRDVLAQLKNEDIATNDAAFWSKLWKTETNPHDVFEVISPTAVRKLKVARPGNVEALLRMAVSHLEKVVDDPDPFVLKSAMTAVSVLTRVLPFILEAYTDPETG 113          
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Match: A0A7S2LZK8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LZK8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.060e-26
Identity = 50/105 (47.62%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 MGAAASTLLLKDALATLKEHDVA--DAAFWDPIWKLQTTPSEIYEILSADDIRRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPFLIE 309
            MGA+AS +  +++L +L   DV+  DA FWD +WK+ ++  E++E+L+ D+ RRLR +R  N+A LF QA A+LC +VE P    F++AL  VR+LTRV+PFL+E
Sbjct:    1 MGASASKIKFRESLTSLISRDVSPEDAEFWDELWKIPSSADEVFELLTPDNARRLRDERFDNLATLFTQATAQLCQIVETPYTIYFDQALNCVRVLTRVLPFLLE 105          
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Match: A0A6H5JFK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK3_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.490e-26
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 MGAAASTLLLKDALATLKEHDVA--DAAFWDPIWKLQTTPSEIYEILSADDIRRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPFLIESYRDPDSG 333
            MG  AS +  +D LA LK  D+A  DAAFW  +WK +T P +++E++S   +R+L+  RPGNV  L   AV  L  V+++P P   + A+TAV +LTRV+PF++E Y DP++G
Sbjct:    1 MGTGASKVAFRDVLAQLKNEDIATNDAAFWSNLWKTETNPHDVFEVISPTAVRKLKVARPGNVEALLRMAVLHLEKVLDDPDPFVLKSAMTAVSVLTRVLPFILEEYTDPETG 113          
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Match: A0A7S3JVS4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVS4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.040e-26
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 MGAAASTLLLKDALATLKEHDVADAA--FWDPIWKLQTTPSEIYEILSADDIRRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPFLIESYRD 321
            MG ++S   L + L TL + DV+  A  FWD +WKL TTP +I+E++  DD+R+L++DRP N+  LF QAVA+LC +V  P P  F +AL  VR+LTR++PFL+E   D
Sbjct:    1 MGNSSSKGDLAEILGTLSQTDVSPEAHDFWDELWKLSTTPEDIFELIPPDDVRQLKRDRPENLVTLFTQAVAQLCQIVHTPVPMYFGQALNCVRILTRMLPFLLEDPSD 109          
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Match: A0A7S3YEL6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEL6_HETAK)

HSP 1 Score: 102 bits (253), Expect = 1.470e-25
Identity = 48/106 (45.28%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 MGAAASTLLLKDALATLKEHDVA--DAAFWDPIWKLQTTPSEIYEILSADDIRRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPFLIES 312
            MG A++     DAL  +   D+   D  FWD +W++ +T  +I+E++S DD+R+  ++RPGN+A LF Q VA+LC +VE P+ S F +ALT VR+LTR++PF++ES
Sbjct:    1 MGNASTREDFGDALEKITRDDIPPDDTDFWDSLWRIPSTAFDIFEMVSPDDVRKWLRERPGNLATLFTQGVAQLCQLVETPNASYFAQALTCVRMLTRLLPFMLES 106          
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Match: A0A7S2UYH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYH4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.340e-25
Identity = 50/111 (45.05%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 MGAAASTLLLKDALATLKEHDVA--DAAFWDPIWKLQTTPSEIYEILSADDIRRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPFLIESYRDPD 327
            MG  +S  L  ++L  ++  DV+  D  FWD +W+++TTP E++E+L  + +RRL+ +R GN+A LF QAVA+LC VVE P P+ F++ALT +R+LTR++P L++S    D
Sbjct:    7 MGNESSRELFAESLEKIQTTDVSPDDTEFWDSLWRIKTTPYEVFEVLGPEGVRRLKSERAGNLATLFTQAVAQLCQVVETPMPAYFDQALTCIRVLTRLVPVLLDSSWGDD 117          
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Match: F0Y4A0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4A0_AURAN)

HSP 1 Score: 107 bits (267), Expect = 8.850e-25
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 MGAAASTLLLKDALATLKEHDVADAA--FWDPIWKLQTTPSEIYEILSADDIRRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPFLIESYRD 321
            MG   S   L D L  L + DV+  A  FWD +WKL TTP +++E++S DD+R+L+++RP NV  LF QAVA+LC +V  P P  F +A   +R+LTR++PFL+E   D
Sbjct:  723 MGGGNSKADLADILVMLSQSDVSPDAHDFWDELWKLSTTPEDVFELISPDDVRQLKRERPENVVTLFTQAVAQLCQIVHTPVPMYFGQASNCLRILTRLLPFLLEDGGD 831          
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Match: A0A8J2SMX9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMX9_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.110e-24
Identity = 49/109 (44.95%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 MGAAASTLLLKDALATLKEHDVADAA--FWDPIWKLQTTPSEIYEILSADDIRRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPFLIESYRD 321
            MG + S   L D L  L ++DV+  A  FWD +WKL TT  +++E+++ +D+R LR++RP NV  LF QA A+LC +V  P P  F +AL  VR+LTR++PFL+E + +
Sbjct:    1 MGGSNSKADLADILVALAQNDVSPDAHDFWDELWKLDTTAEDVFELITPEDVRHLRRERPENVVTLFTQATAQLCQIVHTPVPMYFGQALNCVRVLTRILPFLLEEHDE 109          
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Match: A0A7S2XNZ9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNZ9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.600e-23
Identity = 50/105 (47.62%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 MGAAASTLLLKDALATLKEHDVA--DAAFWDPIWKLQTTPSEIYEILSADDIRRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPFLIE 309
            MGA+AS    ++++  L E DV+  DA FWD +WK+ ++P+E++E++S +  RRLR +R  N+A LF QA A+LC +VE P    F++AL  VR+LTRV+PFL+E
Sbjct:    1 MGASASREKFRESVTALIEVDVSPDDAEFWDELWKIPSSPNEVFELISPEAARRLRDERFDNLATLFTQATAQLCQIVETPYNIYFDQALNCVRVLTRVLPFLME 105          
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Match: A0A6U3SKY5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SKY5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.040e-23
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 MGAAASTLLLKDALATLKEHDVA--DAAFWDPIWKLQTTPSEIYEILSADDIRRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPFLIES--YRDPD 327
            MGA+AS    ++++  L E DV+  DA FWD +WK+ ++  E++E++S D  RRLR +R  N+A LF QA A+LC +VE P    F++AL  VR+LTR++PFL+E     DPD
Sbjct:    1 MGASASREKFRESVTALIEVDVSPDDADFWDELWKIPSSADEVFELISPDAARRLRDERFDNLATLFTQATAQLCQIVETPYNIYFDQALNCVRVLTRILPFLLEKGDLGDPD 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15415.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT96_ECTSI5.910e-2746.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2LZK8_9STRA1.060e-2647.62Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A6H5JFK3_9PHAE3.490e-2645.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3JVS4_9STRA7.040e-2648.62Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3YEL6_HETAK1.470e-2545.28Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UYH4_9STRA4.340e-2545.05Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F0Y4A0_AURAN8.850e-2546.79Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SMX9_9STRA2.110e-2444.95Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2XNZ9_9STRA6.600e-2347.62Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U3SKY5_9STRA9.040e-2346.02Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15415contigP-wetherbeei_contig15415:894..1499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT96
Preferred nameHID1
PFAMsHid1
Model size336
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000138,GO:0000139,GO:0002119,GO:0002164,GO:0002791,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005829,GO:0005856,GO:0005874,GO:0005881,GO:0006810,GO:0006886,GO:0006950,GO:0007275,GO:0007588,GO:0008104,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009791,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0019898,GO:0030421,GO:0031001,GO:0031090,GO:0031312,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0032879,GO:0033036,GO:0034613,GO:0035690,GO:0040011,GO:0040024,GO:0042221,GO:0042493,GO:0042886,GO:0042995,GO:0043005,GO:0043051,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046677,GO:0046907,GO:0048519,GO:0048521,GO:0048856,GO:0050789,GO:0050795,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060259,GO:0065007,GO:0070727,GO:0070887,GO:0071241,GO:0071244,GO:0071702,GO:0071705,GO:0072347,GO:0090087,GO:0090498,GO:0097458,GO:0098588,GO:0098791,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:1901700,GO:1901701,GO:1903745,GO:1903998,GO:1903999,GO:2000252
Exons2
Evalue9.69e-28
EggNOG OGsKOG2226@1|root,KOG2226@2759|Eukaryota
Descriptionresponse to brefeldin A
Cds size336
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.2160666-CDS-P-wetherbeei_contig15415:893..10101683186055.2160666-CDS-P-wetherbeei_contig15415:893..1010Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15415 894..1010 +
1683186055.228865-CDS-P-wetherbeei_contig15415:1280..14991683186055.228865-CDS-P-wetherbeei_contig15415:1280..1499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15415 1281..1499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15415.2.1prot_P-wetherbeei_contig15415.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15415 894..1499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15415.2.1

>prot_P-wetherbeei_contig15415.2.1 ID=prot_P-wetherbeei_contig15415.2.1|Name=mRNA_P-wetherbeei_contig15415.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MGAAASTLLLKDALATLKEHDVADAAFWDPIWKLQTTPSEIYEILSADDI
RRLRKDRPGNVAGLFAQAVAKLCAVVENPSPSEFEEALTAVRLLTRVMPF
LIESYRDPDSG*
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mRNA from alignment at P-wetherbeei_contig15415:894..1499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15415.2.1 ID=mRNA_P-wetherbeei_contig15415.2.1|Name=mRNA_P-wetherbeei_contig15415.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig15415:894..1499+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGCCGCTGCCTCTACCCTCCTACTAAAGGATGCCTTGGCGACGCT CAAGGAGCACGACGTCGCGGATGCAGCGTTTTGGGACCCGATATGGAAGC TGCAAACGACTCCATCTGTAAGTTGGGTGGTAATCTTTCAGTCTGATATT CCTCTTCGTGATCCCCAATCTGTTCATCATTGTATCACCACATTGCACGT TGACACGGTGTCAAAATTGCCAAATATCATCTTTTGGGCGGTTGTGTCGA ACGGCATCGGGATTAGGAGGCAGTTTCCCCCTCGTAGAGGCTGGCAGCAG TAACTACATTTGCTGTATACCGACAACCAAAAGTGCTGGCCCCTGGATCA AGATCCTTTTATTTAAACACTTTCCCCTGTGATTCAGGAAATCTACGAGA TTTTGTCGGCGGACGACATTCGACGGCTGAGAAAAGACCGCCCGGGCAAC GTTGCGGGGCTCTTCGCCCAGGCGGTAGCGAAGCTGTGCGCCGTCGTTGA GAATCCGAGCCCCTCGGAGTTTGAAGAGGCGCTGACGGCCGTGCGCCTCC TGACGCGCGTCATGCCGTTCCTCATCGAGAGCTACCGCGACCCGGACAGC GGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15415:894..1499+

>mRNA_P-wetherbeei_contig15415.2.1 ID=mRNA_P-wetherbeei_contig15415.2.1|Name=mRNA_P-wetherbeei_contig15415.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig15415:894..1499+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGCCGCTGCCTCTACCCTCCTACTAAAGGATGCCTTGGCGACGCT
CAAGGAGCACGACGTCGCGGATGCAGCGTTTTGGGACCCGATATGGAAGC
TGCAAACGACTCCATCTGAAATCTACGAGATTTTGTCGGCGGACGACATT
CGACGGCTGAGAAAAGACCGCCCGGGCAACGTTGCGGGGCTCTTCGCCCA
GGCGGTAGCGAAGCTGTGCGCCGTCGTTGAGAATCCGAGCCCCTCGGAGT
TTGAAGAGGCGCTGACGGCCGTGCGCCTCCTGACGCGCGTCATGCCGTTC
CTCATCGAGAGCTACCGCGACCCGGACAGCGGGTAA
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