mRNA_P-wetherbeei_contig15415.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15415.1.1
Unique NamemRNA_P-wetherbeei_contig15415.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Match: A0A6H5KEB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB2_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 4.580e-44
Identity = 87/186 (46.77%), Postives = 106/186 (56.99%), Query Frame = 1
Query:    1 CGLQVLIRIVGRKGRDEEWQRSAYEEYVRRVRPTLTLSTVWHKSADDALKAVKGD-AVVICLDENGAQHTSPDFSKLLFDLLEEGGSRTTFVIGPAEASHLFSFLC*RISTPYRCAAEVFAGTTLNLRRFILLQGMPPDLQAA---GSQLLSLSKMTFTHATARVILAEQIYRAAEIRKGSGYHKE 546
            CGLQ+ +RI G+K R+E++   AY+EY +R+RP L L T WHK+ DD   AV+ D  VV+CLDE G Q  SP FS  +F  LEEGGSR TFV+G AE                                     G+PP L+     G   LSLS MTFTH  AR +LAEQIYRA+EIR+GS YHKE
Sbjct:   62 CGLQITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFVFSKLEEGGSRLTFVVGGAE-------------------------------------GLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 210          
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Match: A0A7S2XIV0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIV0_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.290e-32
Identity = 77/185 (41.62%), Postives = 105/185 (56.76%), Query Frame = 1
Query:    4 GLQVLIRIVGRKGRDEEWQRSAYEEYVRRVRPT-LTLSTVWHKSADDALKAVKGDA----VVICLDENGAQHTSPDFSKLLFDLLEEGGSRTTFVIGPAEASHLFSFLC*RISTPYRCAAEVFAGTTLNLRRFILLQGMPPDLQAAGSQLLSLSKMTFTHATARVILAEQIYRAAEIRKGSGYHK 543
            G++V IRIVGRK   E+W   AY  Y  R+RP+ + + T+WHK+  + +K VKGD+     V+ LD  G   TS  FS+ ++  L++GGSR +FVIG AE              PY    E+  G+  N ++ ++L               SLS +TFTH  AR +L EQIYRA+EIRKGSGYHK
Sbjct:   58 GMEVRIRIVGRKNGSEKWLEDAYSMYETRLRPSNIDVETIWHKNDQELIKGVKGDSDKGHTVVLLDPRGKPRTSEQFSENMYTWLDQGGSRLSFVIGGAEG------------LPY----ELRDGS-YNPKKSLIL--------------FSLSALTFTHQFARTLLMEQIYRASEIRKGSGYHK 211          
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Match: A0A448ZHA3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHA3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.740e-27
Identity = 76/185 (41.08%), Postives = 95/185 (51.35%), Query Frame = 1
Query:    4 GLQVLIRIVGRKGRDEEWQRSAYEEYVRRVRPT-LTLSTVWHKSADDALKAVKGDAV----VICLDENGAQHTSPDFSKLLFDLLEEGGSRTTFVIGPAEASHLFSFLC*RISTPYRCAAEVFAGTTLNLRRFILLQGMPPDLQAAGSQLLSLSKMTFTHATARVILAEQIYRAAEIRKGSGYHK 543
            G++V IRIVGRK   E W     E Y +R+RP+ + + T WHK     +K V  D      VI LD  G Q TS  FS+ ++  L+EGGSR +F+IG AE                        G    L+      G     QA    L+SLS MTFTH  AR++L EQIYRA EI+KGSGYHK
Sbjct:   71 GMKVNIRIVGRKT-SEPWLEEGVEMYEKRLRPSNVEVETTWHKDNAALIKGVDADRSKNHKVILLDPTGTQPTSEKFSEKVYQWLDEGGSRLSFIIGGAE------------------------GLPAELKYPSYSSGKKSKDQAP--MLISLSAMTFTHQFARLLLIEQIYRATEIQKGSGYHK 228          
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Match: A0A0G4I1Y4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I1Y4_9ALVE)

HSP 1 Score: 109 bits (273), Expect = 6.740e-27
Identity = 75/191 (39.27%), Postives = 101/191 (52.88%), Query Frame = 1
Query:    7 LQVLIRIVGRKGRDEEWQRSAYEEYVRRVRPTLTLSTVWHKSADDALKAVK-----GDAVVICLDENGAQHTSPDFSKLLFDLLEEGGSRTTFVIGPAEASHLFSFLC*RISTPYRCAAEVFAGTTLNLRRFILLQGMPPDLQAAGS-------QLLSLSKMTFTHATARVILAEQIYRAAEIRKGSGYHK 543
            ++  I  VGRK    EWQ +A EEY  R+ P L L  VWH+  D  ++++K     G A+V+ LDE GA   S +FS   F+ +  GGSR  FV+G AE   L   L   +    +  ++  AG +L         G     Q  G+       +  SLS++TFTH  A V+LAEQIYRA EIR+ SGYHK
Sbjct:    1 MRAEILAVGRKTPGREWQATALEEYQNRLSPFLDLEVVWHRDNDALIQSLKKRQSRGGALVV-LDECGASMGSAEFSDFFFEQMVNGGSRVAFVVGAAEG--LPEELKQMVYQQAKAGSKS-AGGSLKTSNGKKAGGEAAKQQKTGAFKWDPPPKTFSLSRLTFTHEMALVLLAEQIYRANEIRRNSGYHK 187          
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Match: A0A8J6CA45_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CA45_DIALT)

HSP 1 Score: 107 bits (266), Expect = 9.670e-26
Identity = 79/190 (41.58%), Postives = 101/190 (53.16%), Query Frame = 1
Query:    1 CGLQVLIRIVGRK---GRDEEWQRSAYEEYVRRVRPTLTLSTVWHKSADDALKAV-----KGDAVVICLDENGAQHTSPDFSKLLFDLLEEGGSRTTFVIGPAEASHLFSFLC*RISTPYRCAAEVFAGTTLNLRRFILLQGMPPDLQAAGSQLLSLSKMTFTHATARVILAEQIYRAAEIRKGSGYHKE 546
            C  Q+ I  VG++      E +  + YEEY  R R  + L TVWHKS  + + AV     KG AVV CLDE G   TS   S+L+F  L EGGSR  FV+G AE   L + L      P R A+    G+  +    + L+             LSL ++TFTH  AR+ILAEQIYRA +IR G+ YHKE
Sbjct:   28 CASQITIHCVGKRRTASSSEGFSDAGYEEYALRSRAHVDLRTVWHKSDGELVVAVGRECAKGCAVV-CLDERGPTCTSIALSELVFRWLTEGGSRLAFVVGGAEG--LPAAL-----RPGRGASHDGRGSGDSAAEALRLR------------YLSLGRLTFTHQMARLILAEQIYRAVQIRAGTQYHKE 197          
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Match: A0A1E7FVP2_9STRA (DUF163-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVP2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.700e-25
Identity = 70/185 (37.84%), Postives = 96/185 (51.89%), Query Frame = 1
Query:    4 GLQVLIRIVGRKGRDEEWQRSAYEEYVRRVRPT-LTLSTVWHKSADDALKAVKGDAV----VICLDENGAQHTSPDFSKLLFDLLEEGGSRTTFVIGPAEASHLFSFLC*RISTPYRCAAEVFAGTTLNLRRFILLQGMPPDLQAAGSQLLSLSKMTFTHATARVILAEQIYRAAEIRKGSGYHK 543
            G++V IRIVGRK   E W     + Y +R+RP+ + + T WHK     +K  + D      VICLD  G Q TS  F+  ++  L+EGGSR +F+IG AE       L   +  P   + ++ A                         ++SLS +TFTH  AR++L EQIYRA EI+KGSGYHK
Sbjct:   38 GMKVNIRIVGRKS-SEPWLEEGVDMYEKRLRPSNVEIETTWHKDNVALMKGYEMDCSKNYKVICLDPKGKQPTSEVFTTNMYQWLDEGGSRLSFIIGGAEG------LPNELKYPTASSKKISAPI-----------------------MISLSSLTFTHQFARLLLIEQIYRATEIQKGSGYHK 192          
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Match: A0A2E3LZ89_9BACT (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Waddliaceae bacterium TaxID=2026802 RepID=A0A2E3LZ89_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 1.500e-23
Identity = 64/179 (35.75%), Postives = 92/179 (51.40%), Query Frame = 1
Query:    7 LQVLIRIVGRKGRDEEWQRSAYEEYVRRVRPTLTLSTVWHKSADDALKAVKGDAVVICLDENGAQHTSPDFSKLLFDLLEEGGSRTTFVIGPAEASHLFSFLC*RISTPYRCAAEVFAGTTLNLRRFILLQGMPPDLQAAGSQLLSLSKMTFTHATARVILAEQIYRAAEIRKGSGYHK 543
            L++ I +VGR    E W  +A ++YV+R+  + ++  +  K+ +  +K +  +  ++CLD  G +  S  F  LLF  LE GGSR TFVIG AE                                     G+P  ++   + L+SLS +TFTH  AR+IL EQIYRA EIRKG+GYHK
Sbjct:    2 LKIKIILVGRT--KEAWLENAVQDYVKRLSSSTSIEWLVLKTNEQLIKQIDKERSILCLDPLGEKVNSERFCTLLFQQLETGGSRVTFVIGGAE-------------------------------------GLPDQIRKKHT-LISLSPLTFTHQIARLILIEQIYRAFEIRKGTGYHK 140          
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Match: A0A7S1ZDB4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZDB4_TRICV)

HSP 1 Score: 86.3 bits (212), Expect = 1.440e-18
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:    4 GLQVLIRIVGRKGRDEEWQRSAYEEYVRRVRPT-LTLSTVWHKSADDALKAVKGDA----VVICLDENGAQHTSPDFSKLLFDLLEEGGSRTTFVIGPAE 288
            G+++ IRIVGRK   E W   AY  Y  R+RP+ + + TVWHK   D +K V+GD      V+ LD +G   TS  FS  ++D L+EGGSR  FVIG AE
Sbjct:    5 GMEIKIRIVGRKNGCEGWLEDAYGMYETRLRPSGVGVETVWHKGDADLVKGVQGDVQKGHAVVLLDPSGQTMTSEKFSDQMYDWLDEGGSRLAFVIGGAE 104          
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Match: A0A7S1IHQ0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IHQ0_9EUGL)

HSP 1 Score: 85.9 bits (211), Expect = 1.510e-18
Identity = 53/127 (41.73%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  169 VVICLDENGAQHTSPDFSKLLFDLLEEGGSRTTFVIGPAEASHLFSFLC*RISTPYRCAAEVFAGTTLNLRRFILLQGMPPDLQAAGSQLL--SLSKMTFTHATARVILAEQIYRAAEIRKGSGYHK 543
            + +CLDEN  Q TS DFS+ ++  LE+GGSR TFVIG A+              P       + GT           G+ P     G Q+L  SLSKMTF H  ARV+L EQ+YRA +IR G+ YH+
Sbjct:    7 ICVCLDENAKQMTSEDFSEFVYQQLEQGGSRCTFVIGGADG------------LPMSLRPRSYGGT-----------GLGPT----GPQMLYLSLSKMTFVHQFARVVLVEQLYRATQIRNGTKYHR 106          
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Match: A0A7S2F628_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F628_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.300e-16
Identity = 63/188 (33.51%), Postives = 83/188 (44.15%), Query Frame = 1
Query:    1 CGLQVLIRIVGRKGRDEEWQRSAYEEYVRRVRP-TLTLSTVWHKSADDALKAVKGDAVVICLDENGAQHTSPDFSKLLFDLLEEGGSRTTFVIGPAEASHLFSFLC*RISTPYRCAAEVFAGTTLNLRRFILLQGMPPDLQAAGS------QLLSLSKMTFTHATARVILAEQIYRAAEIRKGSGYHK 543
              LQV + I GRK  D      A+E+Y  R+ P  + L TVWHKS D   KA+K  +   C+              +    L+ GG          E     +F              V  G           +G+P +++          + +SLS MTFTH  ARVILAEQ+YRAAEIRKG+GYHK
Sbjct:   52 AALQVTLHIQGRKINDHN--EVAFEQYAMRLTPHRIQLKTVWHKSNDQLTKAIKATSREPCI-----------CLDVCGQQLDSGGFEQLLYQRLVEGGSRLAF--------------VIGGA----------EGLPDEVREKKDPKLQHVEFISLSSMTFTHQMARVILAEQVYRAAEIRKGTGYHK 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15415.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEB2_9PHAE4.580e-4446.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XIV0_9STRA1.290e-3241.62Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448ZHA3_9STRA4.740e-2741.08Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A0G4I1Y4_9ALVE6.740e-2739.27Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A8J6CA45_DIALT9.670e-2641.58Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A1E7FVP2_9STRA1.700e-2537.84DUF163-domain-containing protein n=1 Tax=Fragilari... [more]
A0A2E3LZ89_9BACT1.500e-2335.75Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A7S1ZDB4_TRICV1.440e-1847.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1IHQ0_9EUGL1.510e-1841.73Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2F628_9STRA2.300e-1633.51Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15415contigP-wetherbeei_contig15415:25..573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009034639.1
PFAMsSPOUT_MTase
Model size549
Max annot lvl2759|Eukaryota
KEGG koko:K00783
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.11e-12
EggNOG OGsCOG1576@1|root,2RXV6@2759|Eukaryota
Ec32 ortholog descriptionAlpha/beta knot methyltransferases
Ec32 orthologEc-27_000500.1
EC2.1.1.177
Descriptionmethyltransferase activity
Cds size147
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.1668675-CDS-P-wetherbeei_contig15415:24..1711683186055.1668675-CDS-P-wetherbeei_contig15415:24..171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15415 25..171 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.1789796-UTR-P-wetherbeei_contig15415:171..5731683186055.1789796-UTR-P-wetherbeei_contig15415:171..573Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15415 172..573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15415.1.1prot_P-wetherbeei_contig15415.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15415 25..171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15415.1.1

>prot_P-wetherbeei_contig15415.1.1 ID=prot_P-wetherbeei_contig15415.1.1|Name=mRNA_P-wetherbeei_contig15415.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
MPPDLQAAGSQLLSLSKMTFTHATARVILAEQIYRAAEIRKGSGYHKE*
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mRNA from alignment at P-wetherbeei_contig15415:25..573-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15415.1.1 ID=mRNA_P-wetherbeei_contig15415.1.1|Name=mRNA_P-wetherbeei_contig15415.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig15415:25..573- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGCCTGCAGGTGCTGATACGGATTGTTGGCAGGAAAGGACGAGACGA AGAATGGCAAAGAAGTGCATACGAAGAATACGTCCGCCGCGTGCGCCCGA CGCTGACGCTCAGTACGGTGTGGCACAAGTCGGCCGACGACGCCCTGAAG GCGGTGAAGGGCGACGCCGTCGTAATCTGCCTCGACGAGAACGGTGCGCA GCACACAAGCCCCGACTTTTCCAAGCTCCTCTTTGACCTGCTGGAGGAGG GCGGCTCGCGGACCACCTTCGTGATTGGCCCCGCCGAGGCGAGTCACCTT TTTTCTTTTCTTTGCTAGAGGATTTCTACGCCTTACCGATGTGCCGCTGA GGTTTTCGCCGGGACGACGCTAAACCTGCGCCGTTTTATCCTGCTGCAGG GCATGCCGCCCGACCTGCAGGCCGCCGGCTCCCAGCTGCTCAGTTTGAGC AAAATGACGTTCACGCACGCAACGGCGCGAGTTATCCTCGCCGAACAAAT CTACCGCGCTGCCGAGATAAGGAAAGGCTCAGGTTATCACAAGGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15415:25..573-

>mRNA_P-wetherbeei_contig15415.1.1 ID=mRNA_P-wetherbeei_contig15415.1.1|Name=mRNA_P-wetherbeei_contig15415.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig15415:25..573- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCCGACCTGCAGGCCGCCGGCTCCCAGCTGCTCAGTTTGAGCAA
AATGACGTTCACGCACGCAACGGCGCGAGTTATCCTCGCCGAACAAATCT
ACCGCGCTGCCGAGATAAGGAAAGGCTCAGGTTATCACAAGGAGTGA
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