mRNA_P-wetherbeei_contig1528.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1528.5.1
Unique NamemRNA_P-wetherbeei_contig1528.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Match: A0A7S2UR08_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UR08_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.730e-12
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  151 AVDGARRRLFGQLPRAFCRTGNKQLMAPLRGPAIASWYPEDIKPHVRRHFPSMYPDELTERRAAKLALMKRFGKGPPKKGAGKRSKK 411
            A+   R+ +FGQ+P+   RTG K L     G     WYPE I+   R   P  Y  EL +RR  KL  ++R GKGPPKKG GKR++K
Sbjct:   14 AMAAVRKEVFGQMPQRNVRTGYKFLKKSHTGVFDERWYPESIEKSAREVLPG-YTSELEQRRLEKLEYLRRRGKGPPKKGLGKRAQK 99          
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Match: A0A7S2GJ86_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJ86_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.960e-11
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  148 DAVDGARRRLFGQLPRAFCRTGNKQLMAPLRGPAIASWYPEDIKPHVRRHFPSMYPDELT---ERRAAKLALMKRFGKGPPKKGAGKRSKKR 414
            D +  A R +FG  P +  RTGNK +     GP +   Y +++  H  R     +PD L    ERR  KLA +KR GKGPPKKGAGKR+ KR
Sbjct:   74 DNLVEAGRLIFGNRPHSPVRTGNKIIRKKFSGPLLLQQYDKNL--HAERLMKKAFPDFLNPKEERREMKLAYLKRRGKGPPKKGAGKRAAKR 163          
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Match: A0A835Z2B4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.400e-11
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  169 RRLFGQLPRAFCRTGNKQLMAPLRGPAIASWYPEDIKPHVRRHFPSMYP-DELTERRAAKLALMKRFGKGPPKKGAGKRSKKR 414
            RR+F  L     +TG + L   L G A+A WYPE     ++R+   ++  D   ERRA +LA ++  GKGPPKKGAGKR++KR
Sbjct:    8 RRIFMNLNVVKHKTGTRHLTKHLNGLAVADWYPESPSKWMKRYLGEVWDLDGRKERRADQLATLRAKGKGPPKKGAGKRAQKR 90          
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Match: A0A6P6UE71_COFAR (28S ribosomal protein S33, mitochondrial-like n=4 Tax=asterids TaxID=71274 RepID=A0A6P6UE71_COFAR)

HSP 1 Score: 65.5 bits (158), Expect = 8.870e-11
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  127 VLTTAALDAVDGARRRLFGQ-LPRAFCRTGNKQLMAPLRGPAIASWYPEDIKPHVRRHFPSMYPDELTERRAAKLALMKRFGKGPPKKGAGKRSKKR*IVSLP 432
            VL  AA+  V  AR R+FG  L     R+ +K L   L G  ++ WYP DI     RH   +   +  + R  KL ++KR GKGPPKKG GK++ KR  VS P
Sbjct:    9 VLAEAAIKGVTEARARIFGHILNPTGQRSAHKILRKKLIGEKVSQWYPHDI-----RHDDPLVMAQQEQERLDKLEMLKRRGKGPPKKGQGKKAAKRNKVSTP 106          
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Match: A0A7S2WK26_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WK26_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.660e-10
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  100 PGTEHMAHRVLTTAALDAVDGAR---RRLFGQLPRAFCRTGNKQLMAPLRGPAIASWYPEDIKPHVRRHFPSMYPDELTERRAAKLALMKRFGKGPPKKGAGKRSKKR 414
            PG    A   L T +   V   R   RR+FG LP +  RTGNK L     GP + S   +     +RR FP++  +E   RR  KL+ ++R GKGPP KGAGKRS K+
Sbjct:   13 PGPAGFARCTLATLSDGEVRELREAGRRIFGNLPLSPDRTGNKVLRKKWLGPIVTSGDHKPFHDVIRRAFPTLGTEEQDHRRQ-KLSYLRRRGKGPPMKGAGKRSAKK 119          
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Match: A0A7S2HGM2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HGM2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.980e-10
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  139 AALDAVDGARRRLFGQLPRAFCRTGNKQLMAPLRGPAIASWYPEDIKPHVRRHFPSM-----YPDELTERRAAKLALMKRFGKGPPKKGAGKRSKK 411
            A+  A++  R+ +FG LP    RTG++ L  P+ GP +A +Y E ++   R+ + +      Y  E  ERR  K   +++ GKGPPKKGAGKR+ K
Sbjct:    2 ASKAAIEAVRKEVFGHLPVLNIRTGHQVLKKPVVGPYLAKYYMEPMEKSARKAWRTFGYMPPYTTEQQERRLLKNEKLRQKGKGPPKKGAGKRATK 97          
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Match: A0A804JIU1_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804JIU1_MUSAM)

HSP 1 Score: 63.5 bits (153), Expect = 3.900e-10
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  127 VLTTAALDAVDGARRRLFGQ-LPRAFCRTGNKQLMAPLRGPAIASWYPEDIKPHVRRHFPSMYPDELTERRAAKLALMKRFGKGPPKKGAGKRSKKR 414
            +LT AAL  V  AR R+FG  L     R+ +K L   L G  +A WYP DIK       P +   E  ++R AKL ++KR GKGPPKKG GKR+ KR
Sbjct:    6 LLTAAALQGVAEARARIFGHILNPTGKRSPHKILRKKLIGDKVAQWYPYDIK----NDDPLVIARE-EKQRLAKLEMLKRRGKGPPKKGQGKRATKR 97          
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Match: A0A4S8IQ43_MUSBA (Uncharacterized protein n=3 Tax=Petrosaviidae TaxID=1437197 RepID=A0A4S8IQ43_MUSBA)

HSP 1 Score: 63.2 bits (152), Expect = 5.480e-10
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  127 VLTTAALDAVDGARRRLFGQ-LPRAFCRTGNKQLMAPLRGPAIASWYPEDIKPHVRRHFPSMYPDELTERRAAKLALMKRFGKGPPKKGAGKRSKKR 414
            +LT AAL  V  AR R+FG  L     R+ +K L   L G  +A WYP DIK       P +   E  ++R AKL ++KR GKGPPKKG GKR+ KR
Sbjct:    6 LLTAAALQGVAEARARIFGHVLNPTGKRSPHKILRKKLIGDKVAQWYPYDIK----NDDPLVLARE-EKQRLAKLEMLKRRGKGPPKKGQGKRAVKR 97          
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Match: K8EXT6_9CHLO (Unnamed protein product n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EXT6_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 6.810e-10
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  208 TGNKQLMAPLRGPAIASWYPEDIKPHVRRHFPSMYPDELTERRAAKLALMKRFGKGPPKKGAGKRSKKR 414
            TG K L   L GP + SWYPE I     R    ++ D   +RR  KL  MKR GKGPPKKG GKR+KK+
Sbjct:   31 TGRKLLKKALVGPRLTSWYPEGI-----RKMDMLFEDPDDKRRKVKLERMKRRGKGPPKKGEGKRAKKK 94          
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Match: UPI001FB10E94 (uncharacterized protein LOC124938490 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB10E94)

HSP 1 Score: 62.4 bits (150), Expect = 1.110e-9
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  127 VLTTAALDAVDGARRRLFGQLPRAFCRTG-NKQLMAPLRGPAIASWYPEDIKPHVRRHFPSMYPDELTERRAAKLALMKRFGKGPPKKGAGKRSKKR 414
            VL  AA+  V  AR ++FG +     +   +K L   L G  IA WYP DI     R    +Y  +  + R +KL ++KR GKGPPKKG GKRSK++
Sbjct:    9 VLAEAAIKGVTEARAKIFGHVLNPTGQVSPHKILRKKLFGEKIAQWYPHDI-----RTDDPLYMAQQQQERLSKLEMLKRRGKGPPKKGQGKRSKRK 100          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1528.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UR08_9STRA2.730e-1244.83Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2GJ86_9STRA7.960e-1144.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z2B4_9STRA8.400e-1144.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6P6UE71_COFAR8.870e-1141.7528S ribosomal protein S33, mitochondrial-like n=4 ... [more]
A0A7S2WK26_9STRA1.660e-1041.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2HGM2_9STRA1.980e-1038.54Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A804JIU1_MUSAM3.900e-1046.39(wild Malaysian banana) hypothetical protein n=1 T... [more]
A0A4S8IQ43_MUSBA5.480e-1046.39Uncharacterized protein n=3 Tax=Petrosaviidae TaxI... [more]
K8EXT6_9CHLO6.810e-1050.72Unnamed protein product n=1 Tax=Bathycoccus prasin... [more]
UPI001FB10E941.110e-941.24uncharacterized protein LOC124938490 n=1 Tax=Impat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1528contigP-wetherbeei_contig1528:6126..6642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4641.GSMUA_Achr6P20200_001
PFAMsMRP-S33
Model size517
Max annot lvl35493|Streptophyta
KEGG koko:K17411
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-11
EggNOG OGsKOG4844@1|root,KOG4844@2759|Eukaryota,37VF6@33090|Viridiplantae,3GJKJ@35493|Streptophyta,3M0CI@4447|Liliopsida
DescriptionMitochondrial ribosomal subunit S27
Cds size303
COG categoryJ
BRITEbr01610,ko00000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186050.9070418-UTR-P-wetherbeei_contig1528:6125..62391683186050.9070418-UTR-P-wetherbeei_contig1528:6125..6239Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1528 6126..6239 +
1683186050.927933-UTR-P-wetherbeei_contig1528:6542..66421683186050.927933-UTR-P-wetherbeei_contig1528:6542..6642Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1528 6543..6642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186050.9178047-CDS-P-wetherbeei_contig1528:6239..65421683186050.9178047-CDS-P-wetherbeei_contig1528:6239..6542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1528 6240..6542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1528.5.1prot_P-wetherbeei_contig1528.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1528 6240..6542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1528.5.1

>prot_P-wetherbeei_contig1528.5.1 ID=prot_P-wetherbeei_contig1528.5.1|Name=mRNA_P-wetherbeei_contig1528.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MAHRVLTTAALDAVDGARRRLFGQLPRAFCRTGNKQLMAPLRGPAIASWY
PEDIKPHVRRHFPSMYPDELTERRAAKLALMKRFGKGPPKKGAGKRSKKR
*
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mRNA from alignment at P-wetherbeei_contig1528:6126..6642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1528.5.1 ID=mRNA_P-wetherbeei_contig1528.5.1|Name=mRNA_P-wetherbeei_contig1528.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=517bp|location=Sequence derived from alignment at P-wetherbeei_contig1528:6126..6642+ (Phaeothamnion wetherbeei SAG_119_79)
GGGAAAATGAGAGATGAAAACTGTAAGAGAAACATTCCCTGCAGCGTTGC CGTGATCTAGCCCGAGCTCAACGCGACGTTGCCCGCGAGATCTCGATCCC CAGGAACGGAGCACATGGCGCACCGCGTCTTGACGACGGCCGCACTCGAC GCCGTGGACGGCGCTCGGCGAAGACTATTCGGCCAGCTGCCGCGGGCCTT CTGCCGCACCGGCAACAAGCAGCTGATGGCGCCGCTGCGAGGACCAGCTA TTGCGTCGTGGTACCCAGAAGACATCAAGCCCCACGTGCGGCGGCATTTT CCCAGCATGTATCCCGACGAGCTGACAGAAAGAAGAGCAGCGAAGCTGGC GCTTATGAAGCGATTCGGCAAGGGACCGCCGAAAAAGGGAGCTGGAAAGC GCTCGAAGAAGCGATAAATTGTCTCTTTGCCGCCTCCTTGTTGAGGTGGC GGCGCAGCTGGAACACTATTGGCTCTAGCAACGAGGGCTTCTTCTAAGAA ACTGGTGTGATGCATTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1528:6126..6642+

>mRNA_P-wetherbeei_contig1528.5.1 ID=mRNA_P-wetherbeei_contig1528.5.1|Name=mRNA_P-wetherbeei_contig1528.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig1528:6126..6642+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCACCGCGTCTTGACGACGGCCGCACTCGACGCCGTGGACGGCGC
TCGGCGAAGACTATTCGGCCAGCTGCCGCGGGCCTTCTGCCGCACCGGCA
ACAAGCAGCTGATGGCGCCGCTGCGAGGACCAGCTATTGCGTCGTGGTAC
CCAGAAGACATCAAGCCCCACGTGCGGCGGCATTTTCCCAGCATGTATCC
CGACGAGCTGACAGAAAGAAGAGCAGCGAAGCTGGCGCTTATGAAGCGAT
TCGGCAAGGGACCGCCGAAAAAGGGAGCTGGAAAGCGCTCGAAGAAGCGA
TAA
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