mRNA_P-wetherbeei_contig15278.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15278.1.1
Unique NamemRNA_P-wetherbeei_contig15278.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15278.1.1 vs. uniprot
Match: UPI00199B104B (Uncharacterized protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI00199B104B)

HSP 1 Score: 248 bits (634), Expect = 9.650e-73
Identity = 183/512 (35.74%), Postives = 256/512 (50.00%), Query Frame = 1
Query:    1 DKSGKRVLIQTEGAIQVSALALILRVQCPGAKSYARHFRVLIPPPVAQVPDRIPASA-----GLRLRLRPGDTVESVAEALFPAQRSLRQAMVAEVINANPTVFTDGRIHGVPPGTVLWFPDPRDLRKLTQPRLGPNAPSPRPAQTKIAGESI-SSVTAPAPAQPRRRIG---ERPMLQRRTTEPVRNAVPPDCASIPD--GNANAATVAPESRTLETRTRDVESVLGKMRQSQAAFDSQLSSLEHALQGLQKTVAAASTCVARPVIEPVARQEIHTAMKGETKPWYFWLGSALLALITGASGFLFARR-RLLHDLEPKDEQANQR---ARPIKTGIELTIHSTLRPQV-------------------------PGTAGRVEQPPLISSAQAIKSSPTPRRQVESQSAPSAPRPDSIPASASSPLPTTFTGTLAHEMDEVLNNTRSIFNDVDRFIAMGRTKNALGLLELELQQKPDDRDVWIKLMAVYRQEKMSAELESTAREFSQHFPSQR 1416
            D +   V I T+  + + ALAL+LRVQC GA  YARHF  LIPP V+    R+P +      G RL L  GDTVESVA  +FP QR L++ +V +VI  NP  F +GR   +P GTVLWFPD RD+RK  Q  +GP A +   A+   AG S+  S+  PAP +    +     +P+  RR  E      P +C  + +  G    + VAPE   LE + R +ES +  +   Q + D QL  LE +LQ LQ  + +A    A+P   P A+  + T +K E   W  W   A L +     GF F RR  L   L   DEQ ++    A  +   +E T   T  P+                          P  AG  +         A+  +     +++S S P+   PD +               +  EMD+ L+NTRS+F DVDRFIA+GRT+NAL LL+ ++ + P DRD WIKLMA+YRQ+KM  +L    R+F  +FP+++
Sbjct:   52 DAARNLVTITTDEPVAIPALALVLRVQCAGAPLYARHFSALIPPAVSTTQSRLPDAPSATRRGFRLSLLRGDTVESVAAVIFPGQRGLQRNLVRQVIAGNPNAFPNGRARELPAGTVLWFPDLRDIRKSVQ--VGPLASATTGARR--AGRSVVPSLVQPAPPEVAEAMPPKPRKPVTLRRALELGDKPGPQECRQLMELCGAETPSAVAPE---LEDKARKLESGVNALHLKQDSIDQQLQRLEQSLQALQSAIRSAPAVAAQPA-PPPAKVVVRTVVKSEPISWIIWAALAGLVVAAAIGGFAFGRRGSLSRGLAETDEQLDRMLATAATVMRELESTPAPTPAPRXXXXXXXXXXXXXXXXXXPVELADASPPAAGTGQGADFTLDTSAMLPAAAVDVELKSDS-PAQHDPDGLSTD------------VLFEMDQALDNTRSMFTDVDRFIALGRTENALSLLQFQVHKDPKDRDSWIKLMAIYRQQKMDLDLSKAVRQFKNNFPNEK 542          
BLAST of mRNA_P-wetherbeei_contig15278.1.1 vs. uniprot
Match: A0A0S8D893_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_40 TaxID=1703389 RepID=A0A0S8D893_9PROT)

HSP 1 Score: 70.1 bits (170), Expect = 4.780e-9
Identity = 31/76 (40.79%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 1177 LAHEMDEVLNNTRSIFNDVDRFIAMGRTKNALGLLELELQQKPDDRDVWIKLMAVYRQEKMSAELESTAREFSQHF 1404
            L  EMD V++ TR++F+D+DRFI +G+ +NA+ +L+  ++++P DR  W+ LMA+YR   M  +   T  +F Q F
Sbjct:  689 LRAEMDNVMDATRTMFSDIDRFIMLGQYQNAISVLDARIKREPSDRGSWVTLMAIYRDTDMKDDFYRTYADFQQQF 764          
BLAST of mRNA_P-wetherbeei_contig15278.1.1 vs. uniprot
Match: UPI0019C04BDC (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019C04BDC)

HSP 1 Score: 61.6 bits (148), Expect = 3.800e-7
Identity = 47/155 (30.32%), Postives = 71/155 (45.81%), Query Frame = 1
Query:    7 SGKRVLIQTEGAIQVSALALILRVQCPG-AKSYARHFRVLIPPP-VAQVPDRIPAS----------AGLR-----LRLRPGDTVESVAEALFPAQRSLRQAMVAEVINANPTVFTDGRIHGVPPGTVLWFPDPRDLRKLTQPRLGPNAPSPRPAQ 420
            +G R+ I+T   +   A  + L   CPG ++ Y R + +L+ PP V + P    A+          A LR     L  R GDT+ES+A A+FP  R  +++ +  +   NPT+ T G    +P    +  P+ R   K   PR    A  P  AQ
Sbjct:   67 AGARLRIETRAPVNAPAFVIGLVASCPGQSREYQRDYSLLLDPPAVGRAPPSQAAAXXXXXXXXXXASLRAIAATLIARIGDTLESIANAIFPRNRGAKKSYIEALRATNPTLATLGENDPIPVDAPIALPNLRTFAKTQAPRATQQAQEPPRAQ 221          
BLAST of mRNA_P-wetherbeei_contig15278.1.1 vs. uniprot
Match: UPI0016580391 (hypothetical protein n=1 Tax=Thauera sp. CAU 1555 TaxID=2767595 RepID=UPI0016580391)

HSP 1 Score: 61.6 bits (148), Expect = 2.020e-6
Identity = 111/416 (26.68%), Postives = 177/416 (42.55%), Query Frame = 1
Query:  193 PGDTVESVAEALFPAQRSLRQAMVAEVINANPTVFTD--GRIHGVPPGTVLWFPDPRDLRKLTQPRLGPNAPSPRPAQTKIAGESISSVTAPAPAQPRRRIGERPMLQRRTTEPVRNAVPPDCASIPDG---NANAATVAPESRTLETRTRDVES---VLGKMRQS---QAAFDSQLSSLEHALQGLQKTVAAASTCVARPVIEPVARQEIHTAMKGETKPWYFWLGSALLALITGASGFLFARRRLLHDLEPKDEQANQRARPIKTGIELTIHSTLRPQVPGTAGRVEQPPLISSAQAIKSSPTPRRQVESQSAPSAPRPDSIPASASSPLPTTFTGTLAHEMDEVLNNTRSIFNDVDRFIAMGRTKNALGLLELELQQKPDDR-DVWIKLMAVYRQEKMSAELESTAREFSQHF 1404
            PG+++ES+A AL+P + ++R+  VA+   ANPT+F D   R   +PPGT L  PDP    +++ P    +    R A+ K A  +        PA PRR     P    R    V +      A  P G   +A+A + A E + +    R +++   +L ++R+    QA    + + L+ A+   Q T A  +   A P IE  A     TA + +  P Y  L + ++A I G    L  RRR         + A  RA  + T  +    + + P+    A  +E      S  AI+    P  +        AP   S   +A S  P      +A E DE +    S     +  ++ GR + A   L   ++  P      W+KL+ VYR   M AE +  +R+ ++ F
Sbjct:  174 PGESLESLAAALYPHEPAIRERFVADAARANPTLFPDRDSRARALPPGTELLVPDPA---RVSAPATAGSGSPARTAERKPAQMT--------PAAPRRPAATPPPSAPREDRLVVDVAEDATADAPAGPRYDASADSGARERQLVAAIDRSIQAQVDLLERIRELERIQAELIDRANRLDAAMPA-QATPAPPAQQPAAPAIE--ANVPASTAPRSDW-PLYLALFAGIVAAILGLQA-LDRRRR---------DAAAARAASLSTTTQPA--AGVWPEEARAASGLEP-----SRGAIQLDRPPTEE--------APPTPSYEWAAPSVAP------IAVE-DENIEEHESAVELAEIMMSFGRVQGAAETLAEFIRGNPQQAVQPWLKLLDVYRAAGMRAEFDGLSRQLNKTF 542          
BLAST of mRNA_P-wetherbeei_contig15278.1.1 vs. uniprot
Match: A0A2K9LCQ5_9RHOO (Uncharacterized protein n=3 Tax=Rhodocyclales TaxID=206389 RepID=A0A2K9LCQ5_9RHOO)

HSP 1 Score: 60.1 bits (144), Expect = 6.010e-6
Identity = 85/326 (26.07%), Postives = 126/326 (38.65%), Query Frame = 1
Query:   10 GKRVLIQTEGAIQVSALALILRVQCPGAKSYARHFRVLIPPPVAQ--VPDRIPASAGLR-----------------------LRLRPGDTVESVAEALFPAQRSLRQAMVAEVINANPTVFTD--GRIHGVPPGTVLWFPDPRDLRKLTQPRLGPNAPSPRPAQTKIAGESISSVTAPA-PAQPRRRIGERPMLQRRTTEPVRNAVPPDCASIPDGNANAATVAPESRTLETRTRDVESVLGKMRQSQAAFDSQLSSLEHALQGLQKTVAAASTCVARPVIE-PVARQEIHTAMKGETKPWYFWLGSALLALITGASGFLFARRRL 900
            GK V I     I    L L +   C  A    R + +L+P PV +  V D + A AG                             PG+++ES+A ALFP Q + R+  + EV+ ANPT+F D   R   + PGT L  PDP  LR      +   A + RP Q     E+      P+ PA P     + P   R   +   +    D  + P  +A     A E + L    R +++ L  + + +     Q   +E A     +      T    P +E P A+ E+      + +P   W     L L   +   LFA +RL
Sbjct:   68 GKVVTISAPTPINEPVLRLGIDNVC--AARLRREYTLLLPFPVTRPTVADHMAADAGAAPAGPSPRPTSSARRAAPPATYQTWTTAPGESLESLAAALFPGQPAARERFIDEVVRANPTLFPDRGARSLALEPGTELLVPDPARLR------IPAPAATARPKQAAGVAEAXXXXXXPSRPALP----PDAPQTDRLVVQMADDRPATDAGAAP--HAGDDIDARERQLLTAIDRSIQAQLELLERIRELERLQAELIERA----NRLGTIPVTAPNPPAVEQPAAQPELTAKQPPDARPSRDW--PLFLVLFAASVAVLFAWQRL 373          
BLAST of mRNA_P-wetherbeei_contig15278.1.1 vs. uniprot
Match: A0A2U1RUM8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A2U1RUM8_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 1.530e-5
Identity = 45/148 (30.41%), Postives = 71/148 (47.97%), Query Frame = 1
Query:    1 DKSGKRVLIQTEGAIQVSALALILRVQCP--GAKSYARHFRVLIPPPVAQVPDRIPASAGLRLRLRPGDTVESVAEALFPAQRSLRQAMVAEVINANPTVFTDGRIHGVPPGTVLWFPDPRDLRKLTQPRLGPNAPSPRPAQTKIAGE 438
            D +G R+ ++T   +Q  A  L +   C   G  + +R F +L+ P       R P  A   ++   GDT+ S+A A++P  R++R+A V  +  ANP V + G    +PPGT +  PD R        R   +   PRPA T+   +
Sbjct:   84 DGAGWRLRVRTRAPVQEPATRLRVDASCEDGGKDATSRTFDLLLDP-------RAPEPAPPAMQSVAGDTLASIAAAIYPKSRAVREAYVQALRAANPAVQSLGTDEPLPPGTPVVLPDLR--------RFSLSLSLPRPAATESTAQ 216          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15278.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI00199B104B9.650e-7335.74Uncharacterized protein n=1 Tax=Prolixibacteraceae... [more]
A0A0S8D893_9PROT4.780e-940.79Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI0019C04BDC3.800e-730.32Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
UPI00165803912.020e-626.68hypothetical protein n=1 Tax=Thauera sp. CAU 1555 ... [more]
A0A2K9LCQ5_9RHOO6.010e-626.07Uncharacterized protein n=3 Tax=Rhodocyclales TaxI... [more]
A0A2U1RUM8_9PROT1.530e-530.41Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15278contigP-wetherbeei_contig15278:198..1616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1120999.JONM01000023_gene3158
PFAMsDUF1631
Model size1419
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.68e-06
EggNOG OGsCOG3170@1|root,COG3170@2|Bacteria
Descriptiontranslation initiation factor activity
Cds size1419
COG categoryNU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186050.671167-CDS-P-wetherbeei_contig15278:197..16161683186050.671167-CDS-P-wetherbeei_contig15278:197..1616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15278 198..1616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15278.1.1prot_P-wetherbeei_contig15278.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15278 198..1616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15278.1.1

>prot_P-wetherbeei_contig15278.1.1 ID=prot_P-wetherbeei_contig15278.1.1|Name=mRNA_P-wetherbeei_contig15278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=473bp
DKSGKRVLIQTEGAIQVSALALILRVQCPGAKSYARHFRVLIPPPVAQVP
DRIPASAGLRLRLRPGDTVESVAEALFPAQRSLRQAMVAEVINANPTVFT
DGRIHGVPPGTVLWFPDPRDLRKLTQPRLGPNAPSPRPAQTKIAGESISS
VTAPAPAQPRRRIGERPMLQRRTTEPVRNAVPPDCASIPDGNANAATVAP
ESRTLETRTRDVESVLGKMRQSQAAFDSQLSSLEHALQGLQKTVAAASTC
VARPVIEPVARQEIHTAMKGETKPWYFWLGSALLALITGASGFLFARRRL
LHDLEPKDEQANQRARPIKTGIELTIHSTLRPQVPGTAGRVEQPPLISSA
QAIKSSPTPRRQVESQSAPSAPRPDSIPASASSPLPTTFTGTLAHEMDEV
LNNTRSIFNDVDRFIAMGRTKNALGLLELELQQKPDDRDVWIKLMAVYRQ
EKMSAELESTAREFSQHFPSQR*
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mRNA from alignment at P-wetherbeei_contig15278:198..1616-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15278.1.1 ID=mRNA_P-wetherbeei_contig15278.1.1|Name=mRNA_P-wetherbeei_contig15278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1419bp|location=Sequence derived from alignment at P-wetherbeei_contig15278:198..1616- (Phaeothamnion wetherbeei SAG_119_79)
GATAAATCCGGAAAGCGGGTCCTAATTCAGACTGAGGGAGCGATTCAAGT TTCCGCCTTGGCATTGATCTTGCGGGTGCAGTGCCCGGGTGCAAAATCCT ATGCCCGCCATTTCCGGGTGCTAATTCCGCCGCCAGTAGCGCAAGTGCCG GACCGGATCCCAGCCAGTGCCGGTCTGCGCCTCAGGTTGCGCCCCGGCGA TACAGTAGAAAGTGTGGCCGAGGCCCTGTTTCCCGCCCAGCGCAGCCTGC GCCAGGCGATGGTTGCCGAGGTCATTAATGCGAATCCGACCGTCTTTACG GACGGTCGAATCCACGGCGTGCCACCCGGGACTGTCCTTTGGTTTCCGGA TCCGCGGGATTTGCGCAAATTGACTCAACCCAGGCTGGGCCCAAATGCAC CGTCGCCACGGCCTGCGCAAACGAAAATTGCGGGAGAAAGTATCTCATCC GTTACCGCGCCTGCGCCCGCGCAACCGCGACGGCGCATCGGTGAACGCCC GATGCTCCAGCGTCGGACAACGGAACCCGTCCGCAACGCCGTTCCGCCGG ACTGCGCAAGTATTCCTGACGGGAACGCAAATGCTGCAACGGTCGCACCG GAATCACGAACTCTCGAAACACGAACCCGCGACGTGGAATCAGTGCTTGG CAAGATGCGCCAGTCTCAGGCGGCGTTCGACAGTCAACTATCCAGTCTGG AACATGCACTTCAAGGGCTGCAGAAAACCGTCGCTGCGGCGTCGACTTGT GTAGCGCGACCTGTAATTGAGCCCGTTGCCAGGCAGGAAATCCATACTGC GATGAAGGGCGAAACCAAGCCTTGGTATTTCTGGCTCGGCTCTGCTCTGC TCGCTCTTATCACAGGCGCCTCCGGCTTCCTGTTCGCACGTCGGCGTTTA TTGCATGACCTGGAGCCCAAGGATGAACAGGCAAACCAGCGAGCGCGCCC GATCAAGACTGGTATCGAACTCACGATCCACTCTACGCTTCGACCGCAAG TGCCTGGTACAGCGGGCCGTGTCGAGCAACCGCCCCTAATTTCGTCCGCG CAGGCGATTAAATCATCGCCCACACCGCGTCGCCAGGTGGAATCGCAGTC GGCACCATCGGCGCCACGTCCGGATTCGATACCCGCCAGCGCCTCATCAC CGCTCCCGACCACATTTACCGGTACCCTTGCGCACGAAATGGATGAGGTG CTGAACAATACGCGCTCGATTTTCAACGATGTCGACCGGTTCATCGCCAT GGGCCGAACAAAAAATGCCTTGGGCTTACTGGAACTCGAGCTGCAGCAGA AACCAGACGACCGCGATGTCTGGATCAAGTTGATGGCGGTATACCGGCAG GAAAAGATGAGCGCAGAGCTTGAATCCACGGCGCGCGAGTTTTCGCAGCA TTTCCCTTCGCAACGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15278:198..1616-

>mRNA_P-wetherbeei_contig15278.1.1 ID=mRNA_P-wetherbeei_contig15278.1.1|Name=mRNA_P-wetherbeei_contig15278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1419bp|location=Sequence derived from alignment at P-wetherbeei_contig15278:198..1616- (Phaeothamnion wetherbeei SAG_119_79)
GATAAATCCGGAAAGCGGGTCCTAATTCAGACTGAGGGAGCGATTCAAGT
TTCCGCCTTGGCATTGATCTTGCGGGTGCAGTGCCCGGGTGCAAAATCCT
ATGCCCGCCATTTCCGGGTGCTAATTCCGCCGCCAGTAGCGCAAGTGCCG
GACCGGATCCCAGCCAGTGCCGGTCTGCGCCTCAGGTTGCGCCCCGGCGA
TACAGTAGAAAGTGTGGCCGAGGCCCTGTTTCCCGCCCAGCGCAGCCTGC
GCCAGGCGATGGTTGCCGAGGTCATTAATGCGAATCCGACCGTCTTTACG
GACGGTCGAATCCACGGCGTGCCACCCGGGACTGTCCTTTGGTTTCCGGA
TCCGCGGGATTTGCGCAAATTGACTCAACCCAGGCTGGGCCCAAATGCAC
CGTCGCCACGGCCTGCGCAAACGAAAATTGCGGGAGAAAGTATCTCATCC
GTTACCGCGCCTGCGCCCGCGCAACCGCGACGGCGCATCGGTGAACGCCC
GATGCTCCAGCGTCGGACAACGGAACCCGTCCGCAACGCCGTTCCGCCGG
ACTGCGCAAGTATTCCTGACGGGAACGCAAATGCTGCAACGGTCGCACCG
GAATCACGAACTCTCGAAACACGAACCCGCGACGTGGAATCAGTGCTTGG
CAAGATGCGCCAGTCTCAGGCGGCGTTCGACAGTCAACTATCCAGTCTGG
AACATGCACTTCAAGGGCTGCAGAAAACCGTCGCTGCGGCGTCGACTTGT
GTAGCGCGACCTGTAATTGAGCCCGTTGCCAGGCAGGAAATCCATACTGC
GATGAAGGGCGAAACCAAGCCTTGGTATTTCTGGCTCGGCTCTGCTCTGC
TCGCTCTTATCACAGGCGCCTCCGGCTTCCTGTTCGCACGTCGGCGTTTA
TTGCATGACCTGGAGCCCAAGGATGAACAGGCAAACCAGCGAGCGCGCCC
GATCAAGACTGGTATCGAACTCACGATCCACTCTACGCTTCGACCGCAAG
TGCCTGGTACAGCGGGCCGTGTCGAGCAACCGCCCCTAATTTCGTCCGCG
CAGGCGATTAAATCATCGCCCACACCGCGTCGCCAGGTGGAATCGCAGTC
GGCACCATCGGCGCCACGTCCGGATTCGATACCCGCCAGCGCCTCATCAC
CGCTCCCGACCACATTTACCGGTACCCTTGCGCACGAAATGGATGAGGTG
CTGAACAATACGCGCTCGATTTTCAACGATGTCGACCGGTTCATCGCCAT
GGGCCGAACAAAAAATGCCTTGGGCTTACTGGAACTCGAGCTGCAGCAGA
AACCAGACGACCGCGATGTCTGGATCAAGTTGATGGCGGTATACCGGCAG
GAAAAGATGAGCGCAGAGCTTGAATCCACGGCGCGCGAGTTTTCGCAGCA
TTTCCCTTCGCAACGCTAA
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