mRNA_P-wetherbeei_contig15153.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15153.1.1
Unique NamemRNA_P-wetherbeei_contig15153.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Match: A0A835Z666_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z666_9STRA)

HSP 1 Score: 224 bits (571), Expect = 4.700e-64
Identity = 123/245 (50.20%), Postives = 151/245 (61.63%), Query Frame = 1
Query:    1 TFIPYLRQLVHVLIRLMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAGVLGAVDCLRLLVPELEREVASLAALAADPQXXXXXXXXXXXXXXXXXXXXXXXWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTANLVVGRYADWLRDHPEHLRQMFGFLLAGFGTPECAAAAATAIKNVCQACGAQMGEPVLDLYDQLLARREMLP----FRDELEIVEGLSHVVSALP 723
             F P L +LV VL+RLMR+PED DQ T DQ+ D+K+HRYDV D+L DC  VLGAV CL   V  LE E+A+L A     +                       W   EA LF  RS+A+GVPS +  AVP ++  L +LP  + H+RYTANLVVGRY+ WL+ HP+ L  MF +L+ GF T +CAAAAATAIK VC  C A MGEP L LYD L A +  +     F DE+EI+EGL HV SALP
Sbjct:  368 VFGPTLDELVMVLVRLMRFPEDLDQRTEDQVSDIKQHRYDVADVLRDCCQVLGAVHCLGRAVAALEGELAALRAAPGGAEA----------------------WHMAEACLFAARSVAQGVPSHDEDAVPRLLAALPRLPPSSPHLRYTANLVVGRYSRWLKHHPDTLGPMFNYLMGGFQTRDCAAAAATAIKQVCHNCAALMGEPALALYDHLQAAKANIQVSESFHDEIEILEGLCHVASALP 590          
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Match: D8LR94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR94_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.580e-62
Identity = 121/247 (48.99%), Postives = 158/247 (63.97%), Query Frame = 1
Query:    4 FIPYLRQLVHVLIRLMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAGVLGAVDCLRLLVPELEREVASLAALAADPQXXXXXXXXXXXXXXXXXXXXXXXWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTANLVVGRYADWLRDHPEHLRQMFGFLLAGFGTPECAAAAATAIKNVCQACGAQMGEPVLDLY----DQLLARRE-MLPFRDELEIVEGLSHVVSALPPD 729
            F P L +L+ VL+ LMRYPED D+L  D+IDDLKRHRYDV D+L D   +LG V CLR +V  L++E+ +L ALA   +                       WQGVEA LF  RS+ R +P+ E   VP ++ +L +LP  N HVRYTA L+VG+Y++WL+ HPEHL +MF FL+ GF +PE   AAATAIKNVC +CG  MGE VL L     ++  AR E  +  +DELE+++GLS+VVS L PD
Sbjct:  426 FGPCLMRLIGVLVALMRYPEDVDELAYDEIDDLKRHRYDVADVLRDVCRILGGVQCLRQVVILLDQELGTLGALARPDEPGA--------------------WQGVEACLFATRSIGRDIPTSEETIVPQIVGMLPRLPG-NHHVRYTATLIVGKYSEWLKLHPEHLTEMFAFLMEGFASPEVMPAAATAIKNVCHSCGQLMGEQVLGLLQGHLNEAKAREEHRIDIKDELELLQGLSYVVSTLAPD 651          
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Match: B7FP09_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP09_PHATC)

HSP 1 Score: 135 bits (340), Expect = 1.230e-32
Identity = 82/242 (33.88%), Postives = 128/242 (52.89%), Query Frame = 1
Query:    1 TFIPYLRQLVHVLIR-LMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAGVLGAVDCLRLLVPELEREVASLAALAADPQXXXXXXXXXXXXXXXXXXXXXXXWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTANLVVGRYADWLRDHPEHLRQMFGFLLAGFGTPECAAAAATAIKNVCQACGAQ---MGEPVLDLYDQLLARREMLPFRDELEIVEGLSHVVS 714
             + P+L QL+ V I+ LMRYP D D +  D +D+L RHR+ V + + DC  +LG  + L+ +   L++E+ + +                              WQG+E+ L  + ++ R VPSDE + +P    L+ QLP +   +RYTA+  +G++A WL  HP  L+ +  +L  G   PECA AAA AIK +C+ C  Q   + EPV++L+  L      L   DEL+I+EG+   +S
Sbjct:  321 AYTPHLLQLIDVCIKSLMRYPADMDTIPEDLLDELTRHRFYVAETVEDCCRLLGGQNVLQRIGNLLQQEIHAASG--------------------------NQVWQGLESCLACIGAIHRFVPSDEAELLPLTFQLVPQLPTEIRPLRYTASKTIGKFASWLAFHPHLLQPLMPYLAQGLSVPECAPAAAVAIKELCE-CSNQSFAIAEPVMELFQGLTPGT--LEVEDELQILEGVCRALS 533          
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Match: A0A4Q1BI04_TREME (Importin N-terminal domain-containing protein n=2 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BI04_TREME)

HSP 1 Score: 119 bits (298), Expect = 4.960e-27
Identity = 76/239 (31.80%), Postives = 125/239 (52.30%), Query Frame = 1
Query:   22 QLVHVLIRLMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAGVLGAVDCLRLLVPELEREVASLAALAA-DPQXXXXXXXXXXXXXXXXXXXXXXXWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTANLVVGRYADWLRDHPEHLRQMFGFLLAGFGTPE--CAAAAATAIKNVCQACGAQMGEPVLDLYDQLLARREMLPFRDELEIVEGLSHVVSALPPD 729
            +L  ++IR + +P D +  TS + ++ +  R+ +GD L DC  +LGA  CLR+ +  +      L+AL++  PQ                       WQ +EA LF +RS+   V  D+ + +P +M LL +LP  +  +RY A LV+ RY  W+  HP++L     ++ +GF  PE    AAAA A+K +CQ CG+ +   +  L+D +   R+ L   D LE+ E + HV+  + P+
Sbjct:  367 ELQKIIIRHLSFPSDDEGQTSQEKEEFRYFRHRMGDTLKDCCHLLGAPTCLRVSLNLV------LSALSSPSPQ-----------------------WQEIEAPLFSMRSMGAEVDPDDDEVLPHIMELLPRLP-DHPRIRYAAILVLSRYTQWIDRHPQNLEFQLQYISSGFQMPEDEVQAAAAQAMKFMCQDCGSHLVPFLPQLHDFVTQMRDRLDQADLLEVCEAIGHVIERMEPE 575          
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Match: A0A2K1JUE4_PHYPA (Importin N-terminal domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JUE4_PHYPA)

HSP 1 Score: 117 bits (294), Expect = 1.710e-26
Identity = 85/252 (33.73%), Postives = 126/252 (50.00%), Query Frame = 1
Query:    1 TFIPYLRQLVHVLIRLMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAGVLGAVDCLRLLVPELEREVASLAALAADPQXXXXXXXXXXXXXXXXXXXXXXXWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTANLVVGRYADWLRDHPEH---LRQMFGFLLAGFGTPECA-AAAATAIKNVCQACG---AQMGEPVLDLYDQLLARREM--LPFRDELEIVEGLSHVVSALPPD 729
            TF P    LV ++   + YP   +    D++ D K  RY V D+L D A VLG  + LRLL   L +  AS     +                          W+  EA L+ +R++ + VP+ E   +P V+ LL QLP+Q   + YT++L +  YADWL   P     L  +   L +    PE A AAAA A+K+VC AC    A   + +L++Y Q+++ +    L   DEL+++EG+S +VSALPPD
Sbjct:  409 TFRPTFELLVSLVSCRVTYPPGFETWRKDELADFKSTRYAVADMLMDAAAVLGGQETLRLLAQPLLQLAASARGGGS------------------------WDWRAAEASLYCIRAIGKAVPAREDAYMPQVLALLSQLPSQPQLI-YTSSLTIAAYADWLGGSPNAPTLLPSLLQLLTSALSAPEDACAAAALALKHVCDACRKLLAGSADALLNVYQQVMSGKSNFNLSSDDELQLIEGMSLMVSALPPD 635          
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Match: A0A164XM25_9AGAM (ARM repeat-containing protein n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164XM25_9AGAM)

HSP 1 Score: 117 bits (293), Expect = 2.300e-26
Identity = 73/243 (30.04%), Postives = 112/243 (46.09%), Query Frame = 1
Query:    1 TFIPYLRQLVHVLIRLMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAGVLGAVDCLRLLVPELEREVASLAALAADPQXXXXXXXXXXXXXXXXXXXXXXXWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTANLVVGRYADWLRDHPEHLRQMFGFLLAGF--GTPECAAAAATAIKNVCQACGAQMGEPVLDLYDQLLARREMLPFRDELEIVEGLSHVVSALP 723
             F+   + LV ++I+ +R+P DA  L   + DD +  R+ +GD L DC  VLGA  CL      +   +A                                 WQ +EA LF +RS+   V   + +  P +M LL QLP  +  +RY A LV+GRY +W   HP+H+     +L +GF     E AAAA  A+K +C+ C   +   +  LY         L   D +++ E ++HV+S +P
Sbjct:  355 VFLDAYKALVEIIIKHLRFPNDAQDLVGQEADDFRSFRHVIGDTLKDCCYVLGADVCLMRAYEMVVNAIA----------------------LGNSGSGANISWQEIEAPLFSMRSMGGEVDVRDDEITPRIMDLLPQLP-NHPRIRYAAMLVIGRYTEWTNMHPQHIAFQLTYLSSGFEDSDSEVAAAAGQAMKYLCKDCKRHLVPSLPQLYAFYTTAAPKLSQDDRVQVCEAIAHVISYMP 574          
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Match: A0A316VUH6_9BASI (ARM repeat-containing protein n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A316VUH6_9BASI)

HSP 1 Score: 115 bits (288), Expect = 1.080e-25
Identity = 75/247 (30.36%), Postives = 119/247 (48.18%), Query Frame = 1
Query:    4 FIPYLRQLVHVLIRLMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAGVLGAVDCLRLLVPELEREVA-SLAALAADPQXXXXXXXXXXXXXXXXXXXXXXXWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTANLVVGRYADWLRDHPEHLRQMFGFL---LAGFGTPECAAAAATAIKNVCQACGAQMGEPVLDLYDQLLA-RREMLPFRDELEIVEGLSHVVSALPPD 729
            F+     L+ ++I+L+R+P+D D  +S  + D +  R+ VGD L DC  VLGA +CL   +  +E  +A S  A AA  Q                       WQ +EA LF +R++       +    P +M ++  LP  +  V+Y   LV+ RY +W+  HPE +  +  ++   L+G    E  AAAA AI  +CQ C   +   +  LY+         LP  D + + EG++ VV+A+P D
Sbjct:  367 FLEIFENLLSIVIKLLRWPDDVDTASSSSVADHRDFRHFVGDTLKDCCYVLGATECLGKSLQMVEALLAQSQQAAAAGAQGPK--------------------WQDIEAPLFSMRAMGSEADMRDNNVTPRIMDIVASLP-DHPKVKYAGLLVISRYTEWVAGHPERIPTLLSYISSGLSGAQVDETGAAAAQAILYLCQDCAPHLVAYLPQLYEFFTGLNTSALPASDLIPVTEGIASVVAAMPTD 592          
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Match: A0A7D8ZFA0_9TREE (Importin N-terminal domain-containing protein n=1 Tax=Vanrija humicola TaxID=5417 RepID=A0A7D8ZFA0_9TREE)

HSP 1 Score: 113 bits (283), Expect = 4.930e-25
Identity = 74/246 (30.08%), Postives = 121/246 (49.19%), Query Frame = 1
Query:    1 TFIPYLR---QLVHVLIRLMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAGVLGAVDCLRLLVPELEREVASLAALAADPQXXXXXXXXXXXXXXXXXXXXXXXWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTANLVVGRYADWLRDHPEHLRQMFGFLLAGF--GTPECAAAAATAIKNVCQACGAQMGEPVLDLYDQLLARREMLPFRDELEIVEGLSHVVSALP 723
             F PY++   QL   +IR + +P D++  T+ + D+ +  R+ +GD L DC  VLGA  CL+       +    +    A P                        WQ +EA LF +RS+   V  D+ + +P +M LL +LP ++  +RY A LV+ RY  W+  HP++L    G++ AGF     E +AAAA A+K +CQ C   +   +  L+  +    + L   D +E+ E +++V+  LP
Sbjct:  362 NFAPYVQIFGQLQTTIIRHLHFPADSESQTAQERDEFRTFRHRMGDTLKDCCQVLGASACLK-------KSYDLVIEAMAKPTPS---------------------WQEIEAPLFSMRSMGAEVDPDDDEVMPHIMDLLPKLP-EHPRIRYAAILVISRYTQWIDRHPQNLAFQLGYVSAGFDMAEDEVSAAAAQAMKFLCQDCNRHLVPFLPQLHTFVTTVGQKLDQADMVEVCEAIAYVIQTLP 578          
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Match: A0A507CDN5_9FUNG (Importin N-terminal domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CDN5_9FUNG)

HSP 1 Score: 113 bits (283), Expect = 4.960e-25
Identity = 74/242 (30.58%), Postives = 122/242 (50.41%), Query Frame = 1
Query:    7 IPYLRQLVHVLIRLMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAGVLGAVDCLRLLVPELEREVASLAALAADPQXXXXXXXXXXXXXXXXXXXXXXXWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTANLVVGRYADWLRDHPEHLRQMFGFLLAGFGTPECAAAAATAIKNVCQACGAQMGEPVLDL---YDQLLARREMLPFRDELEIVEGLSHVVSALP 723
            IP   +L  ++I+ ++YP D  + T+ + D+ +  R+ +GD+L DC  V+G         P L R  A L                               WQ +EA LF +R++   +   E   +P +M+ L QLP+ ++ V+Y A LV+GRYA+W R HP ++     F+  GF   E  AAAA A+K +C++CG  + + + +L   Y+QL+ R   L   D  ++ E + HV++A+P
Sbjct:  372 IPTYIRLTDIMIKHLKYPSDLGRWTALERDEFRDFRHVMGDVLKDCVRVVGEG-------PALARPHAMLKGFMLTSTQGGDQPPTLDPSIP---------WQSIEAPLFALRTMGTCISHTENVYLPEIMSWLPQLPS-HSKVKYAAILVIGRYAEWTRLHPNYIPYQLNFISKGFDDAESTAAAAQAMKFLCESCGVLLVDYLNELHPFYNQLMTR---LDRSDRRDVAEAIGHVIAAVP 593          
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Match: A0A2R6W1F3_MARPO (Importin N-terminal domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W1F3_MARPO)

HSP 1 Score: 112 bits (281), Expect = 9.190e-25
Identity = 88/252 (34.92%), Postives = 125/252 (49.60%), Query Frame = 1
Query:    4 FIPYLRQLVHVLIRLMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAGVLGAVDCLRLLVPELEREVASLAALAADPQXXXXXXXXXXXXXXXXXXXXXXXWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTANLVVGRYADWLRDHPEH---LRQMFGFLLAGFGTPE--CAAAAATAIKNVCQACGAQMGEPV---LDLYDQLLARREM--LPFRDELEIVEGLSHVVSALPPD 729
            F P    LV ++   + YP   +    D++ D K+ RY V D+L D A VLG    LRLL   L +  A++                               W+ VEA L+ +R++A+ VP  E   +P V+ +L +LP Q   + YT++L V   ADWL   P     L  + G L      PE  CAAAA  A+K+VC AC  ++G+ V   L+LY Q+++ +    L   DEL++VEGLS VVSALP D
Sbjct:  399 FKPTFELLVSLVSFRVTYPAGFEAWRKDELADFKQTRYAVADMLLDAAAVLGGDATLRLLSQPLLQMAANV------------------------DNGGSWEWRSVEASLYCIRAIAKAVPLSENLILPQVLGILSKLPPQ-PQLLYTSSLTVASLADWLGVAPSARPLLPLLLGLLTNALSVPEDPCAAAA-LALKHVCDACSKELGQSVEALLELYRQVMSGQGNFHLASEDELQLVEGLSIVVSALPAD 624          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15153.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z666_9STRA4.700e-6450.20Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
D8LR94_ECTSI1.580e-6248.99Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B7FP09_PHATC1.230e-3233.88Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A4Q1BI04_TREME4.960e-2731.80Importin N-terminal domain-containing protein n=2 ... [more]
A0A2K1JUE4_PHYPA1.710e-2633.73Importin N-terminal domain-containing protein n=2 ... [more]
A0A164XM25_9AGAM2.300e-2630.04ARM repeat-containing protein n=2 Tax=Sistotremast... [more]
A0A316VUH6_9BASI1.080e-2530.36ARM repeat-containing protein n=2 Tax=Ceraceosorus... [more]
A0A7D8ZFA0_9TREE4.930e-2530.08Importin N-terminal domain-containing protein n=1 ... [more]
A0A507CDN5_9FUNG4.960e-2530.58Importin N-terminal domain-containing protein n=1 ... [more]
A0A2R6W1F3_MARPO9.190e-2534.92Importin N-terminal domain-containing protein n=3 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15153contigP-wetherbeei_contig15153:134..1640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR94
PFAMsCHORD,Xpo1
Model size729
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K05288,ko:K15436
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.59e-63
EggNOG OGsKOG2081@1|root,KOG2081@2759|Eukaryota
Descriptionnuclear localization sequence binding
Cds size729
COG categoryK
BRITEko00000,ko00001,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186046.3895411-CDS-P-wetherbeei_contig15153:133..2401683186046.3895411-CDS-P-wetherbeei_contig15153:133..240Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15153 134..240 +
1683186046.3997939-CDS-P-wetherbeei_contig15153:701..9751683186046.3997939-CDS-P-wetherbeei_contig15153:701..975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15153 702..975 +
1683186046.4074304-CDS-P-wetherbeei_contig15153:1292..16401683186046.4074304-CDS-P-wetherbeei_contig15153:1292..1640Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15153 1293..1640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15153.1.1prot_P-wetherbeei_contig15153.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15153 134..1640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15153.1.1

>prot_P-wetherbeei_contig15153.1.1 ID=prot_P-wetherbeei_contig15153.1.1|Name=mRNA_P-wetherbeei_contig15153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
TFIPYLRQLVHVLIRLMRYPEDADQLTSDQIDDLKRHRYDVGDLLNDCAG
VLGAVDCLRLLVPELEREVASLAALAADPQQQQQQQQAGGGASGGGGSGG
GGGWQGVEAYLFGVRSLARGVPSDEGQAVPAVMTLLLQLPAQNAHVRYTA
NLVVGRYADWLRDHPEHLRQMFGFLLAGFGTPECAAAAATAIKNVCQACG
AQMGEPVLDLYDQLLARREMLPFRDELEIVEGLSHVVSALPPD
back to top

mRNA from alignment at P-wetherbeei_contig15153:134..1640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15153.1.1 ID=mRNA_P-wetherbeei_contig15153.1.1|Name=mRNA_P-wetherbeei_contig15153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1507bp|location=Sequence derived from alignment at P-wetherbeei_contig15153:134..1640+ (Phaeothamnion wetherbeei SAG_119_79)
ACGTTCATCCCGTACCTGCGGCAGCTAGTGCATGTGCTCATCCGGCTCAT GCGGTACCCCGAGGATGCCGACCAGCTGACGTCCGACCAGATCGATGACC TCAAAAGGTGCATTCCTGTTATCTATTGGGCAAACGGTTGATCTGGAAGC AGGTTGTAACCCTCAGAGGTTTTAAAACGTTGCGTTCTTCGCACGGTTGT TGTCGGATTTAAGTTGCGGTCGCTTTCAAATAGTGTCTTTACATTACAGG GCGACGTGAGATGGTGATGATAGACAGCGGGTGGGAAAATATCTGCCGTG TATCTGTGTGCGTGCATGGTTTGGGTCCGGGAAGGTACTGGCTGGATATC TGCACTTTTCTTCAGCCGCTTTCGTTCTGCCGCTCCTTGTAGCGCATTTT CTGCAGCAAACCTCCAACTTTCCCCGCAGACGTGAGGCATGATAAAGAAC AATCGCTTTACGCTGAACCATCGCTGCTTTGCCTTCATCTCTCTTTCCCG TCTCGGCTTCTGCTTCTCATTACCTCTTGCTTCCGCCGCCGCCTCTCCCG CATCACGTCGACTTCCAGGCATCGTTACGACGTCGGTGACCTCCTGAACG ACTGCGCCGGCGTTCTCGGCGCCGTCGATTGCCTCCGGCTGCTGGTCCCG GAGCTCGAGCGGGAGGTAGCGTCACTCGCGGCGCTCGCGGCGGATCCGCA GCAGCAGCAGCAGCAGCAGCAGGCGGGCGGCGGCGCTAGCGGTGGCGGCG GTAGCGGCGGCGGCGGCGGATGGCAGGGCGTGGAGGCGTACCTTTTCGGT GTGCGGTCGCTGGCTAGAGGCGTGCCGTCGGACGAAGGACAGGTGAGGAA GGGGCTCCAGCGGTTGCACGAATGCGGTTGAACGGCGGCCGTGTCGAGTT TCCTGTGTAATTTTCCTTTTTCTCTGCCCCAAGTAATTTCTTCATCGTTG GAGGGTGTTCAGCAGCTGAGTCCTTTGCACCTTTCTGAAGGATATAGAAG ACTCTGCTGGCGCGGAAAGGCCCGCGGCCTGGTCGGATTCAGTGCGCCCG TTGCCTACATTACTTCTCTGGGGACAGTCGGGAGCACCAGCCACATGCTT TTCACATCCATTCAAATTCAGCCTCTGCTGCCCCTCCCTCTTTTCCTTGC GTTCTCCAGGCGGTGCCGGCGGTTATGACGCTCCTCCTGCAGCTCCCGGC CCAAAATGCGCACGTGCGCTACACCGCCAACCTGGTTGTGGGCCGCTACG CCGACTGGCTGCGGGACCACCCCGAGCACCTCCGGCAAATGTTCGGCTTT CTGCTGGCCGGCTTCGGCACGCCCGAGTGCGCCGCGGCGGCCGCCACCGC CATCAAAAACGTTTGCCAGGCCTGCGGCGCTCAAATGGGCGAGCCCGTGC TCGATCTCTACGACCAGTTGTTGGCACGGCGCGAGATGCTGCCGTTCCGG GATGAGCTGGAAATCGTCGAGGGGCTGAGTCACGTCGTGTCAGCACTGCC GCCGGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15153:134..1640+

>mRNA_P-wetherbeei_contig15153.1.1 ID=mRNA_P-wetherbeei_contig15153.1.1|Name=mRNA_P-wetherbeei_contig15153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig15153:134..1640+ (Phaeothamnion wetherbeei SAG_119_79)
ACGTTCATCCCGTACCTGCGGCAGCTAGTGCATGTGCTCATCCGGCTCAT
GCGGTACCCCGAGGATGCCGACCAGCTGACGTCCGACCAGATCGATGACC
TCAAAAGGCATCGTTACGACGTCGGTGACCTCCTGAACGACTGCGCCGGC
GTTCTCGGCGCCGTCGATTGCCTCCGGCTGCTGGTCCCGGAGCTCGAGCG
GGAGGTAGCGTCACTCGCGGCGCTCGCGGCGGATCCGCAGCAGCAGCAGC
AGCAGCAGCAGGCGGGCGGCGGCGCTAGCGGTGGCGGCGGTAGCGGCGGC
GGCGGCGGATGGCAGGGCGTGGAGGCGTACCTTTTCGGTGTGCGGTCGCT
GGCTAGAGGCGTGCCGTCGGACGAAGGACAGGCGGTGCCGGCGGTTATGA
CGCTCCTCCTGCAGCTCCCGGCCCAAAATGCGCACGTGCGCTACACCGCC
AACCTGGTTGTGGGCCGCTACGCCGACTGGCTGCGGGACCACCCCGAGCA
CCTCCGGCAAATGTTCGGCTTTCTGCTGGCCGGCTTCGGCACGCCCGAGT
GCGCCGCGGCGGCCGCCACCGCCATCAAAAACGTTTGCCAGGCCTGCGGC
GCTCAAATGGGCGAGCCCGTGCTCGATCTCTACGACCAGTTGTTGGCACG
GCGCGAGATGCTGCCGTTCCGGGATGAGCTGGAAATCGTCGAGGGGCTGA
GTCACGTCGTGTCAGCACTGCCGCCGGAC
back to top