mRNA_P-wetherbeei_contig15053.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15053.2.1
Unique NamemRNA_P-wetherbeei_contig15053.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15053.2.1 vs. uniprot
Match: A0A848XR02_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A848XR02_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 1.860e-14
Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   55 ALVGGAIVALAAGIIPADESAFHAPHWVIGACGFVFMIAGFLV--------VVPETMSRMKN-------FLAAVMLSLFAAIPGWIAFGSGPRVFGGSISFGAMTSATHPGEMVGRIAFGFGAVLLGLCAAYVWWKWLR 426
            A VG  IV ++ G IP D ++ HAP WV+G  G VFM+ G L+        + P+  + ++        F+ AV++S F AI  W+ FG GPR F G ++ G+ T         GR  FG   VL  L A  +WW+ L+
Sbjct:   25 AAVGLVIVFVSLGWIPVDPASVHAPMWVLGLAGLVFMLPGLLMCYYGIRNGLAPDGTTFVEKPWGGPGWFVGAVIISAFGAIGLWVGFGEGPREFSGGVT-GSPTE--------GRFVFGSMGVLCTLLAGGIWWRGLK 154          
BLAST of mRNA_P-wetherbeei_contig15053.2.1 vs. uniprot
Match: A0A6N6L3W3_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6N6L3W3_9CHLR)

HSP 1 Score: 71.6 bits (174), Expect = 4.560e-13
Identity = 46/134 (34.33%), Postives = 69/134 (51.49%), Query Frame = 1
Query:   58 LVGGAIVALAAGIIPADESAFHAPHWVIGACGFVFMIAGFLVVVPETMSRMKN----------FLAAVMLSLFAAIPGWIAFGSGPRVFGGSISFGAMT-SATHPGEMVGRIAFGFGAVLLGLCAAYVWWKWLR 426
            L+G  IV L+  IIP+DESAFHAP WV+   G VF +AG  V+   + + ++            +  + LS FA +  W+AFG G R F  S+S   ++   T      GR  FG  A++L +   Y  + +L+
Sbjct:    9 LMGAFIVLLSLDIIPSDESAFHAPRWVVAVAGGVFKVAGMAVIWQNSFTHLQETTWYQTVSHLLIGGIFLS-FALVFNWVAFGPGEREFSSSVSIPFISVENTGSNASSGRFFFGVFALMLDIGVIYALYFYLK 141          
BLAST of mRNA_P-wetherbeei_contig15053.2.1 vs. uniprot
Match: A0A1B6Y8U2_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. EhC07 TaxID=1849360 RepID=A0A1B6Y8U2_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 3.170e-12
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   13 QMTPAARNAVAVICALVGGAIVALAAGIIPADESAFHAPHWVIGACGFVFMIAGFLVVVPETMSRMKNFLAAVMLSLFAAIPGWIAFGSGPRVFGGSISFGAMTSATHPGEMVGRIAFGFGAVLLGLCAAYVWWKWLR 426
            +++PA     + +  L G   + +  GIIP D+   +AP WV+G CGFVF +AG ++++ E  S + + L+ +++  F  I GWIAF      F G   F + T        + R  FG G++L    A Y   ++L+
Sbjct:    4 KLSPAKTKLFSWLFILTGLFFILIGIGIIPVDDPTLNAPKWVVGLCGFVFSLAGVIILIGEK-SPINHLLSGLLVLSFGCIGGWIAFYGEAAHFSGGTPFLSNTQNVW----IARTLFGSGSLLCFAVAFYTILQYLK 136          
BLAST of mRNA_P-wetherbeei_contig15053.2.1 vs. uniprot
Match: A0A1J5RYJ1_9ZZZZ (Uncharacterized protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5RYJ1_9ZZZZ)

HSP 1 Score: 68.6 bits (166), Expect = 6.850e-12
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   13 QMTPAARNAVAVICALVGGAIVALAAGIIPADESAFHAPHWVIGACGFVFMIAG--FLVVVPETMSRMKNFLAAVMLSLFAAIPGWIAFGSGPRVFGGSISFGAMTSATHPGEMVGRIAFGFGAVLLGLCAAYV 408
             M+P AR  +A+     GG + A     IP+   A   P WVI A   +F + G   L++  E M+ ++N ++ + +   A    W+AFG+G R F  S SF  +T+    GE+ GR+AFGF AVL+ L    V
Sbjct:    9 SMSPRARVFMALAFFFFGGFLFAFVLDWIPSKHVA---PLWVIAAAAMMFSLGGAMILLIENERMAWLRNLVSWLFVVCLAIPFNWVAFGAGERQFSSSSSFLGITTGGASGEIEGRVAFGFFAVLMDLMVVLV 139          
BLAST of mRNA_P-wetherbeei_contig15053.2.1 vs. uniprot
Match: UPI0017AC4CB9 (Uncharacterized protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017AC4CB9)

HSP 1 Score: 62.8 bits (151), Expect = 1.490e-9
Identity = 56/163 (34.36%), Postives = 75/163 (46.01%), Query Frame = 1
Query:   13 QMTPAARNAVA---VICALVGGAIVALAAGIIPADESAFHAPH---WVIGACGFVFMIAGFLVVVPETMSR----------------MKNFLAAVMLSLFAAIPGWIAFGSGPRVFGGSISFGAMTSATHPGEMVGRIAFGFGAVLLGLCA---AYVWWKWLR 426
            +  P +RN +    ++ A VG  IV +  G+I   E   H P    WV    G +F++AG +V+V     R                ++  +  VM + FA I  WIAFG GPR F  +I F A   A    E+VGR AFGFGA+L   C    A   W  LR
Sbjct:    3 EQKPLSRNGMVWAGLLAAGVGLVIVLMVLGVI--GEPPKHPPKTPIWVAVLAGGLFLLAGLVVLVNALTGRDPGAEVPPFAPFWPRLLQVLVGVVMFASFAVIGSWIAFGPGPRNFETNIPFLASGVAN---ELVGRCAFGFGAILTWACTLLVALAGWSKLR 160          
BLAST of mRNA_P-wetherbeei_contig15053.2.1 vs. uniprot
Match: A0A345ZH48_9GAMM (Uncharacterized protein n=1 Tax=Lysobacter sp. TY2-98 TaxID=2290922 RepID=A0A345ZH48_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 1.500e-5
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   61 VGGAIVALAAG---IIPADESAFHAPHWVIGACGFVFMIAG-FLVVVPETMSRMKNFLAAVMLSLFAAIPGWIAFGSGPRVFGGSISFGAMTSATHPGEMVGRIAFGFGAVLL 387
            VG  +V +AAG   ++        AP WV+     +F +AG  LV     +  +  +L  V+L     +PGWIAFGSGPR    +++FGA  + +   E+V R AFG GA++L
Sbjct:   10 VGIGLVIVAAGMAALVHGHPEQLKAPAWVVFTALGLFGLAGRCLVGQALRLEGLVRWLVCVLLGAMIIVPGWIAFGSGPRQCT-TLAFGARIATS---EVVCRGAFGAGALIL 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15053.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A848XR02_9BACT1.860e-1435.97Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]
A0A6N6L3W3_9CHLR4.560e-1334.33Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A1B6Y8U2_9BACT3.170e-1231.16Uncharacterized protein n=1 Tax=Balneola sp. EhC07... [more]
A0A1J5RYJ1_9ZZZZ6.850e-1235.07Uncharacterized protein n=1 Tax=mine drainage meta... [more]
UPI0017AC4CB91.490e-934.36Uncharacterized protein n=1 Tax=Rhodoplanes sp. Ta... [more]
A0A345ZH48_9GAMM1.500e-536.28Uncharacterized protein n=1 Tax=Lysobacter sp. TY2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15053contigP-wetherbeei_contig15053:550..975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size426
Hectar predicted targeting categorysignal peptide
Exons1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.0947366-CDS-P-wetherbeei_contig15053:549..9601683186043.0947366-CDS-P-wetherbeei_contig15053:549..960Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15053 550..960 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.102639-UTR-P-wetherbeei_contig15053:960..9751683186043.102639-UTR-P-wetherbeei_contig15053:960..975Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15053 961..975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15053.2.1prot_P-wetherbeei_contig15053.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15053 550..960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15053.2.1

>prot_P-wetherbeei_contig15053.2.1 ID=prot_P-wetherbeei_contig15053.2.1|Name=mRNA_P-wetherbeei_contig15053.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MTPAARNAVAVICALVGGAIVALAAGIIPADESAFHAPHWVIGACGFVFM
IAGFLVVVPETMSRMKNFLAAVMLSLFAAIPGWIAFGSGPRVFGGSISFG
AMTSATHPGEMVGRIAFGFGAVLLGLCAAYVWWKWLR
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mRNA from alignment at P-wetherbeei_contig15053:550..975-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15053.2.1 ID=mRNA_P-wetherbeei_contig15053.2.1|Name=mRNA_P-wetherbeei_contig15053.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig15053:550..975- (Phaeothamnion wetherbeei SAG_119_79)
CTGACCCCGGAGCAAATGACCCCGGCCGCGCGCAACGCGGTCGCCGTTAT CTGCGCTCTCGTTGGTGGCGCCATCGTCGCGCTCGCGGCGGGCATCATAC CCGCGGACGAAAGCGCGTTTCACGCCCCGCACTGGGTAATCGGCGCCTGT GGGTTCGTATTCATGATCGCGGGTTTCCTGGTGGTCGTTCCGGAAACCAT GTCGCGCATGAAGAATTTTCTCGCGGCGGTGATGCTGAGCCTGTTCGCCG CAATTCCGGGCTGGATAGCATTCGGCTCAGGCCCGCGCGTGTTCGGTGGC TCGATTTCGTTCGGCGCGATGACGAGCGCGACCCATCCCGGTGAAATGGT TGGGCGCATCGCGTTCGGATTCGGCGCGGTGCTGCTTGGGCTGTGTGCGG CCTATGTTTGGTGGAAGTGGCTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15053:550..975-

>mRNA_P-wetherbeei_contig15053.2.1 ID=mRNA_P-wetherbeei_contig15053.2.1|Name=mRNA_P-wetherbeei_contig15053.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig15053:550..975- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCCGGCCGCGCGCAACGCGGTCGCCGTTATCTGCGCTCTCGTTGG
TGGCGCCATCGTCGCGCTCGCGGCGGGCATCATACCCGCGGACGAAAGCG
CGTTTCACGCCCCGCACTGGGTAATCGGCGCCTGTGGGTTCGTATTCATG
ATCGCGGGTTTCCTGGTGGTCGTTCCGGAAACCATGTCGCGCATGAAGAA
TTTTCTCGCGGCGGTGATGCTGAGCCTGTTCGCCGCAATTCCGGGCTGGA
TAGCATTCGGCTCAGGCCCGCGCGTGTTCGGTGGCTCGATTTCGTTCGGC
GCGATGACGAGCGCGACCCATCCCGGTGAAATGGTTGGGCGCATCGCGTT
CGGATTCGGCGCGGTGCTGCTTGGGCTGTGTGCGGCCTATGTTTGGTGGA
AGTGGCTGCGC
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