mRNA_P-wetherbeei_contig14905.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14905.2.1
Unique NamemRNA_P-wetherbeei_contig14905.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14905.2.1 vs. uniprot
Match: A0A6H5L7R8_9PHAE (ERCC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7R8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.210e-18
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:  121 CACRANDPLLNELRQLAGDCVRTGRQPLRLSVLRAIKSVKRYPLPIRTHEDACALEGVGGYIAQRMMRGM 330
            CAC +N PLL EL+ L  +C+RTG+  LR  ++RA+KS+KRYPLPI T ++ACALEGVG + A+RM+RG+
Sbjct:   44 CACVSNGPLLVELKSLDEECLRTGKVKLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGL 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14905.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7R8_9PHAE9.210e-1858.57ERCC4 domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14905contigP-wetherbeei_contig14905:560..1237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQM7
Preferred nameMus81
PFAMsERCC4
Model size538
Max annot lvl2759|Eukaryota
KEGG koko:K08991
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0000727,GO:0000793,GO:0000794,GO:0002164,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007095,GO:0007127,GO:0007129,GO:0007131,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0016043,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0019899,GO:0022402,GO:0022414,GO:0022607,GO:0031297,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0040019,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045005,GO:0045132,GO:0045143,GO:0045786,GO:0045930,GO:0045995,GO:0046483,GO:0048256,GO:0048257,GO:0048285,GO:0048476,GO:0048518,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051026,GO:0051094,GO:0051239,GO:0051240,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:2000026
Exons2
Evalue2.07e-18
EggNOG OGsCOG1948@1|root,KOG2379@2759|Eukaryota
Ec32 ortholog descriptionERCC4 domain containing protein
Ec32 orthologEc-10_006250.1
Description3'-flap endonuclease activity
Cds size537
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.273706-CDS-P-wetherbeei_contig14905:560..8911683186037.273706-CDS-P-wetherbeei_contig14905:560..891Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14905 561..891 -
1683186037.2857256-CDS-P-wetherbeei_contig14905:1031..12371683186037.2857256-CDS-P-wetherbeei_contig14905:1031..1237Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14905 1032..1237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14905.2.1prot_P-wetherbeei_contig14905.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14905 561..1237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14905.2.1

>prot_P-wetherbeei_contig14905.2.1 ID=prot_P-wetherbeei_contig14905.2.1|Name=mRNA_P-wetherbeei_contig14905.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
LGCYSLHFFPRNSRAMSAFVGGGRKSARGNGGASTTREEHCACRANDPLL
NELRQLAGDCVRTGRQPLRLSVLRAIKSVKRYPLPIRTHEDACALEGVGG
YIAQRMMRGMRDPSRAPPTVGDAMDVGGSLSQEPTVAAAAGTQTGRGAKG
KAPRQRIAGANVSAGAAVAAAPRQITDVG
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mRNA from alignment at P-wetherbeei_contig14905:560..1237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14905.2.1 ID=mRNA_P-wetherbeei_contig14905.2.1|Name=mRNA_P-wetherbeei_contig14905.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig14905:560..1237- (Phaeothamnion wetherbeei SAG_119_79)
CTGGGATGCTACAGTTTGCATTTTTTCCCCCGCAACTCTCGCGCGATGAG
CGCCTTCGTCGGCGGTGGCAGAAAGAGCGCTCGAGGAAATGGAGGGGCGT
CCACCACCAGGGAGGAGCACTGCGCGTGTCGAGCCAACGATCCTCTGCTA
AACGAGCTTCGCCAGCTCGCTGGAGATTGCGTGCGAACGGGCAGGCAACC
CTTAAGGTGCGTTCATCAAGTTGTATCTCGCCGAATATCGCGGTTTCTTC
GTCATCATAATTTTTCCGTTATTCGAAAGCGATACCCAACTTTTTCGCGC
CGTGTTCCCCACGCTCCTGCTTTCTCCCTTCTAAACATATGCACAGGCTT
TCCGTGTTGCGTGCAATCAAGTCCGTGAAGCGTTACCCGCTCCCCATCCG
AACGCACGAAGACGCGTGCGCCCTCGAGGGTGTTGGCGGTTATATTGCGC
AGCGCATGATGCGCGGCATGCGCGACCCCTCCCGGGCGCCACCGACCGTG
GGTGACGCGATGGACGTCGGCGGGTCCCTTTCGCAGGAGCCGACGGTGGC
AGCGGCTGCGGGTACTCAGACGGGCCGCGGCGCAAAGGGAAAAGCCCCCC
GGCAGCGCATCGCTGGCGCCAATGTGAGTGCGGGCGCCGCCGTCGCAGCA
GCGCCAAGGCAGATCACAGACGTGGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14905:560..1237-

>mRNA_P-wetherbeei_contig14905.2.1 ID=mRNA_P-wetherbeei_contig14905.2.1|Name=mRNA_P-wetherbeei_contig14905.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig14905:560..1237- (Phaeothamnion wetherbeei SAG_119_79)
CTGGGATGCTACAGTTTGCATTTTTTCCCCCGCAACTCTCGCGCGATGAG
CGCCTTCGTCGGCGGTGGCAGAAAGAGCGCTCGAGGAAATGGAGGGGCGT
CCACCACCAGGGAGGAGCACTGCGCGTGTCGAGCCAACGATCCTCTGCTA
AACGAGCTTCGCCAGCTCGCTGGAGATTGCGTGCGAACGGGCAGGCAACC
CTTAAGGCTTTCCGTGTTGCGTGCAATCAAGTCCGTGAAGCGTTACCCGC
TCCCCATCCGAACGCACGAAGACGCGTGCGCCCTCGAGGGTGTTGGCGGT
TATATTGCGCAGCGCATGATGCGCGGCATGCGCGACCCCTCCCGGGCGCC
ACCGACCGTGGGTGACGCGATGGACGTCGGCGGGTCCCTTTCGCAGGAGC
CGACGGTGGCAGCGGCTGCGGGTACTCAGACGGGCCGCGGCGCAAAGGGA
AAAGCCCCCCGGCAGCGCATCGCTGGCGCCAATGTGAGTGCGGGCGCCGC
CGTCGCAGCAGCGCCAAGGCAGATCACAGACGTGGGA
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