prot_P-wetherbeei_contig14905.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig14905.2.1
Unique Nameprot_P-wetherbeei_contig14905.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length179
Homology
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BLAST of mRNA_P-wetherbeei_contig14905.2.1 vs. uniprot
Match: A0A6H5L7R8_9PHAE (ERCC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7R8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.210e-18
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:   41 CACRANDPLLNELRQLAGDCVRTGRQPLRLSVLRAIKSVKRYPLPIRTHEDACALEGVGGYIAQRMMRGM 110
            CAC +N PLL EL+ L  +C+RTG+  LR  ++RA+KS+KRYPLPI T ++ACALEGVG + A+RM+RG+
Sbjct:   44 CACVSNGPLLVELKSLDEECLRTGKVKLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGL 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14905.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7R8_9PHAE9.210e-1858.57ERCC4 domain-containing protein n=2 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027421DNA polymerase lambda lyase domain superfamilyGENE3D1.10.150.110coord: 34..112
e-value: 2.6E-6
score: 29.7
IPR027421DNA polymerase lambda lyase domain superfamilySUPERFAMILY47802DNA polymerase beta, N-terminal domain-likecoord: 43..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14905contigP-wetherbeei_contig14905:561..1237 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14905.2.1mRNA_P-wetherbeei_contig14905.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig14905 560..1237 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig14905.2.1 ID=prot_P-wetherbeei_contig14905.2.1|Name=mRNA_P-wetherbeei_contig14905.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
LGCYSLHFFPRNSRAMSAFVGGGRKSARGNGGASTTREEHCACRANDPLL
NELRQLAGDCVRTGRQPLRLSVLRAIKSVKRYPLPIRTHEDACALEGVGG
YIAQRMMRGMRDPSRAPPTVGDAMDVGGSLSQEPTVAAAAGTQTGRGAKG
KAPRQRIAGANVSAGAAVAAAPRQITDVG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027421DNA_pol_lamdba_lyase_dom_sf