mRNA_P-wetherbeei_contig14790.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A0A836C7M6_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M6_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 5.890e-22 Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 2
Query: 65 FAAAHPGPVRVMVRCPADPETEG----LNGQTVLVQLPS-VTGTVRELKELLAPQVGG-MAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGR 352
FAA HPGPV V V+CPAD + E L GQ V V L + V TV+ELK+ L +GG M AN+ QLRD +RGFL+D+ +LA+YNL G ++LVPR RGGR
Sbjct: 8 FAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A0A4D9CLT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLT9_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 6.310e-16 Identity = 53/106 (50.00%), Postives = 71/106 (66.98%), Query Frame = 2
Query: 56 EGAFAAAHPGPVRVMVRCPADPE--TEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRG-FLKDSQSLASYNLAG---DVHLELVPRSRGGRR 355
E A+A+A+PG + ++ P D T L GQ V +++ SV TVRE+KE L+P +GGM N+ QLR+A +G FLKD+Q+LASYNL LELV RSRGGR+
Sbjct: 640 ESAYASANPGAGSISIQAPQDESATTWNLKGQLVKLEIGSVMSTVREVKEQLSPLLGGMPPNKMQLRNAEQGVFLKDAQTLASYNLGAAGSSTVLELVTRSRGGRK 745
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: K8Z790_NANGC (Splicing factor 3A subunit 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z790_NANGC) HSP 1 Score: 85.9 bits (211), Expect = 4.150e-15 Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 2
Query: 56 EGAFAAAHPGPVRVMVRCPADPE--TEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRG-FLKDSQSLASYNLAG---DVHLELVPRSRGGRR 355
E A+A+A+ G + ++ P D T L GQ V +++ SV TVRE+KE L+P +GGM N+ QLR+A +G FLKD+Q+LASYNL LELV RSRGGR+
Sbjct: 326 ESAYASANTGAGSISIQAPQDESAATWNLKGQLVKLEIGSVMSTVREVKEQLSPLLGGMPPNKMQLRNAEQGVFLKDAQTLASYNLGAAGSSTVLELVTRSRGGRK 431
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A0A7S3LZ45_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZ45_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.320e-11 Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 2
Query: 83 GPVRVMVRCPAD------PETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRD--ASRGFLKDSQSLASYNLAGDVHLELVPRSRGGRR 355
G + V V+ PA P T L GQTV V + VT +V++LKELL+ Q+GGM AN+QQL+ A GFLKD+ SLA N+ LE+ +SRGG+R
Sbjct: 317 GEISVQVQLPAVGTDASVPATWNLQGQTVTVAV-KVTDSVKQLKELLSIQLGGMPANKQQLKASAAGLGFLKDANSLAELNVGDGAVLEMTLKSRGGKR 414
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A0A7S3VKH4_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VKH4_DUNTE) HSP 1 Score: 74.3 bits (181), Expect = 5.060e-11 Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 2
Query: 50 QDEGAFAAAHPGPVRVMVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRG 346
Q E F AH GP +V V+CP E L GQ + V++ S+ TV ELKE LA V G+AA+RQ+L GFL+D SLA YN+A DV L+L + RG
Sbjct: 728 QPEEEFLQAHSGPSKVRVQCPEVEGNEKLIGQLLEVEVASLQDTVGELKERLAG-VLGLAASRQKLSRDGVGFLRDEFSLAHYNVAPDVILQLGAKDRG 825
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: D8SDB1_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SDB1_SELML) HSP 1 Score: 70.5 bits (171), Expect = 9.230e-10 Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 2
Query: 65 FAAAHPGPVRVMVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGRR 355
FA +PGP+ V V P L GQ + + +PSV+ T+ LKE +A ++G + AN+Q+L GFL+D+QSLA YN+A L L+ R RGG++
Sbjct: 670 FAFQYPGPIPVSVAVPTVEGEGSLKGQVLQLTMPSVSETIASLKEKIAAEIG-LPANKQKL-SGRIGFLRDTQSLAFYNIAPGESLTLLLRERGGKK 764
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: B8BS45_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS45_THAPS) HSP 1 Score: 69.7 bits (169), Expect = 1.650e-9 Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 2
Query: 77 HPGPVRVMVRCPADPETEG--LNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFL-KDSQSLASYNLAGDVHLELVPRSRGGRR 355
+P V VR P D G NGQT+ + P T TV+E+K +L Q+GGM N+ QL+ GF+ KD +LA +N+ + L+LVP++RGGR+
Sbjct: 670 NPAEVAFCVRIPYDASNAGWNFNGQTIDLS-PGATTTVKEVKAMLKEQLGGMPINKMQLKHPDSGFMNKDGLTLAHFNVGPGMTLDLVPKTRGGRK 764
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A0A096P8H9_OSTTA (Unnamed product (Fragment) n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P8H9_OSTTA) HSP 1 Score: 66.6 bits (161), Expect = 2.890e-9 Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query: 53 DEGAFAAAHPGPVRVMVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGR 352
DE F A+PG + V CP L GQT+ +++ S+ + +LK L+ P G +A N+Q+L GFLKD+ SLA YNL + L ++RG R
Sbjct: 121 DESDFLEANPGAATIKVVCPQVDGDGKLTGQTLEIKVGSLAEKIVDLKRLIKPLAGDLAQNKQKLSTPDLGFLKDTASLAYYNLKDKAVINLSIKARGKR 220
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A4RR64_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RR64_OSTLU) HSP 1 Score: 67.4 bits (163), Expect = 8.840e-9 Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 2
Query: 53 DEGAFAAAHPGPVRVMVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGR 352
DE F A+PG + V CP L GQT+ +++ S+ + +LK + P G +A N+Q+L GFLKD+ SLA YNL L L ++RG R
Sbjct: 536 DESEFLEANPGEATINVVCPTVEGDSSLTGQTLEIKVSSLADKIVDLKRSIKPLAGDLAQNKQKLSTLGLGFLKDTASLAYYNLKDGSTLNLSIKARGKR 635
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: C1EJ71_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EJ71_MICCC) HSP 1 Score: 65.9 bits (159), Expect = 2.970e-8 Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 2
Query: 65 FAAAHPGPVRVMVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGRR 355
F AA+ G + V P+ + LNGQTV + + S++ V ELK+L+ GG+AAN+Q++ GF D SLA YN+ L+L + RGGR+
Sbjct: 610 FLAANGGSGVIKVTFPSVDGDDNLNGQTVDLNVDSLSTPVSELKKLIKEAAGGLAANKQKISVPGLGFFTDKNSLAYYNIKYGTTLQLSLKERGGRK 706 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig14790.1.1 >prot_P-wetherbeei_contig14790.1.1 ID=prot_P-wetherbeei_contig14790.1.1|Name=mRNA_P-wetherbeei_contig14790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp MVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLback to top mRNA from alignment at P-wetherbeei_contig14790:200..1144+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig14790.1.1 ID=mRNA_P-wetherbeei_contig14790.1.1|Name=mRNA_P-wetherbeei_contig14790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=945bp|location=Sequence derived from alignment at P-wetherbeei_contig14790:200..1144+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig14790:200..1144+ >mRNA_P-wetherbeei_contig14790.1.1 ID=mRNA_P-wetherbeei_contig14790.1.1|Name=mRNA_P-wetherbeei_contig14790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig14790:200..1144+ (Phaeothamnion wetherbeei SAG_119_79)back to top |