mRNA_P-wetherbeei_contig14790.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14790.1.1
Unique NamemRNA_P-wetherbeei_contig14790.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A0A836C7M6_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.890e-22
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 2
Query:   65 FAAAHPGPVRVMVRCPADPETEG----LNGQTVLVQLPS-VTGTVRELKELLAPQVGG-MAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGR 352
            FAA HPGPV V V+CPAD + E     L GQ V V L + V  TV+ELK+ L   +GG M AN+ QLRD +RGFL+D+ +LA+YNL G   ++LVPR RGGR
Sbjct:    8 FAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109          
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A0A4D9CLT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLT9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.310e-16
Identity = 53/106 (50.00%), Postives = 71/106 (66.98%), Query Frame = 2
Query:   56 EGAFAAAHPGPVRVMVRCPADPE--TEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRG-FLKDSQSLASYNLAG---DVHLELVPRSRGGRR 355
            E A+A+A+PG   + ++ P D    T  L GQ V +++ SV  TVRE+KE L+P +GGM  N+ QLR+A +G FLKD+Q+LASYNL        LELV RSRGGR+
Sbjct:  640 ESAYASANPGAGSISIQAPQDESATTWNLKGQLVKLEIGSVMSTVREVKEQLSPLLGGMPPNKMQLRNAEQGVFLKDAQTLASYNLGAAGSSTVLELVTRSRGGRK 745          
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: K8Z790_NANGC (Splicing factor 3A subunit 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z790_NANGC)

HSP 1 Score: 85.9 bits (211), Expect = 4.150e-15
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 2
Query:   56 EGAFAAAHPGPVRVMVRCPADPE--TEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRG-FLKDSQSLASYNLAG---DVHLELVPRSRGGRR 355
            E A+A+A+ G   + ++ P D    T  L GQ V +++ SV  TVRE+KE L+P +GGM  N+ QLR+A +G FLKD+Q+LASYNL        LELV RSRGGR+
Sbjct:  326 ESAYASANTGAGSISIQAPQDESAATWNLKGQLVKLEIGSVMSTVREVKEQLSPLLGGMPPNKMQLRNAEQGVFLKDAQTLASYNLGAAGSSTVLELVTRSRGGRK 431          
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A0A7S3LZ45_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZ45_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.320e-11
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 2
Query:   83 GPVRVMVRCPAD------PETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRD--ASRGFLKDSQSLASYNLAGDVHLELVPRSRGGRR 355
            G + V V+ PA       P T  L GQTV V +  VT +V++LKELL+ Q+GGM AN+QQL+   A  GFLKD+ SLA  N+     LE+  +SRGG+R
Sbjct:  317 GEISVQVQLPAVGTDASVPATWNLQGQTVTVAV-KVTDSVKQLKELLSIQLGGMPANKQQLKASAAGLGFLKDANSLAELNVGDGAVLEMTLKSRGGKR 414          
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A0A7S3VKH4_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VKH4_DUNTE)

HSP 1 Score: 74.3 bits (181), Expect = 5.060e-11
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 2
Query:   50 QDEGAFAAAHPGPVRVMVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRG 346
            Q E  F  AH GP +V V+CP     E L GQ + V++ S+  TV ELKE LA  V G+AA+RQ+L     GFL+D  SLA YN+A DV L+L  + RG
Sbjct:  728 QPEEEFLQAHSGPSKVRVQCPEVEGNEKLIGQLLEVEVASLQDTVGELKERLAG-VLGLAASRQKLSRDGVGFLRDEFSLAHYNVAPDVILQLGAKDRG 825          
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: D8SDB1_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SDB1_SELML)

HSP 1 Score: 70.5 bits (171), Expect = 9.230e-10
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   65 FAAAHPGPVRVMVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGRR 355
            FA  +PGP+ V V  P       L GQ + + +PSV+ T+  LKE +A ++G + AN+Q+L     GFL+D+QSLA YN+A    L L+ R RGG++
Sbjct:  670 FAFQYPGPIPVSVAVPTVEGEGSLKGQVLQLTMPSVSETIASLKEKIAAEIG-LPANKQKL-SGRIGFLRDTQSLAFYNIAPGESLTLLLRERGGKK 764          
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: B8BS45_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS45_THAPS)

HSP 1 Score: 69.7 bits (169), Expect = 1.650e-9
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 2
Query:   77 HPGPVRVMVRCPADPETEG--LNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFL-KDSQSLASYNLAGDVHLELVPRSRGGRR 355
            +P  V   VR P D    G   NGQT+ +  P  T TV+E+K +L  Q+GGM  N+ QL+    GF+ KD  +LA +N+   + L+LVP++RGGR+
Sbjct:  670 NPAEVAFCVRIPYDASNAGWNFNGQTIDLS-PGATTTVKEVKAMLKEQLGGMPINKMQLKHPDSGFMNKDGLTLAHFNVGPGMTLDLVPKTRGGRK 764          
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A0A096P8H9_OSTTA (Unnamed product (Fragment) n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P8H9_OSTTA)

HSP 1 Score: 66.6 bits (161), Expect = 2.890e-9
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:   53 DEGAFAAAHPGPVRVMVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGR 352
            DE  F  A+PG   + V CP       L GQT+ +++ S+   + +LK L+ P  G +A N+Q+L     GFLKD+ SLA YNL     + L  ++RG R
Sbjct:  121 DESDFLEANPGAATIKVVCPQVDGDGKLTGQTLEIKVGSLAEKIVDLKRLIKPLAGDLAQNKQKLSTPDLGFLKDTASLAYYNLKDKAVINLSIKARGKR 220          
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: A4RR64_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RR64_OSTLU)

HSP 1 Score: 67.4 bits (163), Expect = 8.840e-9
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 2
Query:   53 DEGAFAAAHPGPVRVMVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGR 352
            DE  F  A+PG   + V CP       L GQT+ +++ S+   + +LK  + P  G +A N+Q+L     GFLKD+ SLA YNL     L L  ++RG R
Sbjct:  536 DESEFLEANPGEATINVVCPTVEGDSSLTGQTLEIKVSSLADKIVDLKRSIKPLAGDLAQNKQKLSTLGLGFLKDTASLAYYNLKDGSTLNLSIKARGKR 635          
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Match: C1EJ71_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EJ71_MICCC)

HSP 1 Score: 65.9 bits (159), Expect = 2.970e-8
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 2
Query:   65 FAAAHPGPVRVMVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQLRDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGRR 355
            F AA+ G   + V  P+    + LNGQTV + + S++  V ELK+L+    GG+AAN+Q++     GF  D  SLA YN+     L+L  + RGGR+
Sbjct:  610 FLAANGGSGVIKVTFPSVDGDDNLNGQTVDLNVDSLSTPVSELKKLIKEAAGGLAANKQKISVPGLGFFTDKNSLAYYNIKYGTTLQLSLKERGGRK 706          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14790.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A836C7M6_9STRA5.890e-2254.90Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
A0A4D9CLT9_9STRA6.310e-1650.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8Z790_NANGC4.150e-1549.06Splicing factor 3A subunit 1 n=1 Tax=Nannochlorops... [more]
A0A7S3LZ45_9STRA4.320e-1147.47Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3VKH4_DUNTE5.060e-1148.48Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
D8SDB1_SELML9.230e-1042.27Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
B8BS45_THAPS1.650e-941.67Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A096P8H9_OSTTA2.890e-938.00Unnamed product (Fragment) n=2 Tax=Ostreococcus ta... [more]
A4RR64_OSTLU8.840e-938.00Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
C1EJ71_MICCC2.970e-839.18Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14790contigP-wetherbeei_contig14790:200..1144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps21026
PFAMsPRP21_like_P,Surp
Model size945
Max annot lvl2836|Bacillariophyta
KEGG koko:K12825
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.21e-12
EggNOG OGsKOG0007@1|root,KOG0007@2759|Eukaryota,2XDBC@2836|Bacillariophyta
DescriptionmRNA 3'-splice site recognition
Cds size261
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186033.4968824-UTR-P-wetherbeei_contig14790:199..2961683186033.4968824-UTR-P-wetherbeei_contig14790:199..296Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14790 200..296 +
1683186033.5170498-UTR-P-wetherbeei_contig14790:557..11441683186033.5170498-UTR-P-wetherbeei_contig14790:557..1144Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14790 558..1144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186033.5084074-CDS-P-wetherbeei_contig14790:296..5571683186033.5084074-CDS-P-wetherbeei_contig14790:296..557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14790 297..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14790.1.1prot_P-wetherbeei_contig14790.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14790 297..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14790.1.1

>prot_P-wetherbeei_contig14790.1.1 ID=prot_P-wetherbeei_contig14790.1.1|Name=mRNA_P-wetherbeei_contig14790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MVRCPADPETEGLNGQTVLVQLPSVTGTVRELKELLAPQVGGMAANRQQL
RDASRGFLKDSQSLASYNLAGDVHLELVPRSRGGRR*
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mRNA from alignment at P-wetherbeei_contig14790:200..1144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14790.1.1 ID=mRNA_P-wetherbeei_contig14790.1.1|Name=mRNA_P-wetherbeei_contig14790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=945bp|location=Sequence derived from alignment at P-wetherbeei_contig14790:200..1144+ (Phaeothamnion wetherbeei SAG_119_79)
TGCTGCTGGCGGTGCTGTTGCTGGCGGCGATTCGGCAACGGCACCGACGC AGGACGAGGGGGCATTCGCGGCGGCGCACCCAGGACCGGTCCGCGTCATG GTGCGTTGCCCGGCGGACCCCGAGACAGAGGGCCTCAATGGACAGACGGT GCTCGTCCAGCTGCCGTCCGTGACGGGCACGGTGCGGGAGTTGAAGGAGC TGCTGGCACCGCAGGTCGGCGGCATGGCGGCGAACCGGCAGCAGCTACGG GACGCCAGCCGCGGCTTCCTGAAGGACTCGCAGTCACTGGCCTCTTACAA TTTGGCGGGCGACGTGCACCTTGAGCTCGTGCCGAGGAGTCGCGGTGGCC GACGGTAGCGGGCTGCAGCCGGCGGGCAGCAATGGGTGGTGCTACAAGTC GACGGCGGCGACTGGTGGCGAATGGCAGGCGGCGGACGGCGACTGGTGGC GGGCGGTAAGTGACGATTGGTGACAGGCGGCAACCGGCGGCACCTGGCAA ATGGAATCAGGCGGCAATTGGTAGCAGTTGGTGACACCTAGCGAAACCTG GCGGCAGCTAGCGTGTACCAGGCGGCAGACTGCACGCCTGGGCTGGCGGC GGCGGGCCGCGCCTGTGGAGAGGCGGCCTACATTAGATCTCTAGCTACGG TAGCGCCATCTAGGCCGAGCGGCCGCCGCCCCACGGCACGATCCGTTCCA GAGCGGCGCTAGGAGCTCTTCCTTTCACGGCTGCGAAGCATCAGACGCTG CTGGAGGAACACAGGTCAGTCGTGTCATTGGTGTGTTGCATGTCTGCGAC GATGCACCGGCGGCTGCTGTACGGTCAGCAGAACTGATCGTCTAGCGGCG ATTGGGTAGCTTGATCGAAGTTTCAAAGAGAAAGACACACAGCGAAACAG GCTTGTCGACGTAAAGCTTAATACAACTGCATAACAGCACATGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14790:200..1144+

>mRNA_P-wetherbeei_contig14790.1.1 ID=mRNA_P-wetherbeei_contig14790.1.1|Name=mRNA_P-wetherbeei_contig14790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig14790:200..1144+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCGTTGCCCGGCGGACCCCGAGACAGAGGGCCTCAATGGACAGAC
GGTGCTCGTCCAGCTGCCGTCCGTGACGGGCACGGTGCGGGAGTTGAAGG
AGCTGCTGGCACCGCAGGTCGGCGGCATGGCGGCGAACCGGCAGCAGCTA
CGGGACGCCAGCCGCGGCTTCCTGAAGGACTCGCAGTCACTGGCCTCTTA
CAATTTGGCGGGCGACGTGCACCTTGAGCTCGTGCCGAGGAGTCGCGGTG
GCCGACGGTAG
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