mRNA_P-wetherbeei_contig147.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: D8LK53_ECTSI (HTH La-type RNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK53_ECTSI) HSP 1 Score: 146 bits (368), Expect = 6.470e-36 Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 1
Query: 190 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGG-MGVPRYIKV 504
E +AY LAV+QI FYF+VENLC+DIF+R ++D+ G+IPIAFVANFPGVAR G E DI G+ S T++VD ENETMR+R GWE WLLPN G GVPRYIKV
Sbjct: 124 EQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKV 229
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A836CAE4_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE4_9STRA) HSP 1 Score: 141 bits (356), Expect = 2.370e-35 Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = 1
Query: 187 AENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAAA 531
AE + AA+ AV+Q+ +YFSV NLC D+F+R ++D G+IP+AFVANFPG A GAE+ DI+ L S+ +E DE NETMRLR GW+ W+LPN GG+GVPRYIK++ + A
Sbjct: 4 AEAKKMAAEYAVKQMEWYFSVHNLCSDVFMRSYMDTEGYIPVAFVANFPGCASLGAEFTDILEALKSSEMLEFDEANETMRLREGWDMWILPNASGGLGVPRYIKLSEDEAAKIA 118
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: K8ZBX0_NANGC (Rna-binding la domain protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZBX0_NANGC) HSP 1 Score: 125 bits (313), Expect = 4.500e-29 Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 190 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQ-SQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDT 519
E R Y A +AVQQI +YFSV+NLC+D +LR HLD+ G++P+A + NFP VA A+Y++IV+ L + S +E DE NET+RL+ WLLPN GGMG PR++K APDT
Sbjct: 54 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLK-QAPDT 163
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: D0NQG1_PHYIT (HTH La-type RNA-binding domain-containing protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NQG1_PHYIT) HSP 1 Score: 123 bits (309), Expect = 5.740e-29 Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 1
Query: 166 VNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLA 525
VN +Y + AQ A QI FYF+ +NL +DIFLRQH+D GF+P+AFV +F V +Y ++ + QS+T+E+DE+NE +RLR GW+ W+ PN GG GVPRYIK+ + LA
Sbjct: 110 VNGVYVPTPDLKVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKQSETVELDEQNEKIRLRQGWQMWVWPNAEGGYGVPRYIKLAEDEALA 229
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: G4ZF40_PHYSP (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZF40_PHYSP) HSP 1 Score: 123 bits (308), Expect = 7.370e-29 Identity = 63/139 (45.32%), Postives = 87/139 (62.59%), Query Frame = 1
Query: 100 GGGASRRGRNRTQNDDPSRMNGVNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPD 516
G G GR + +++ + NGV Y + AQ A QI FYF+ +NL +DIFLRQH+D GF+P+AFV +F V +YA ++ + QS+T+E+DE+NE +RLR GW+ W+ PN GG GVPRYIKV D
Sbjct: 92 GNGGRFGGRRQNGDNNGAYYNGV---YVPTPDVKVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYASLLEAVKQSETLELDEQNEKIRLREGWQKWVWPNAEGGYGVPRYIKVADKD 227
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A484DZL2_BRELC (HTH La-type RNA-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZL2_BRELC) HSP 1 Score: 123 bits (308), Expect = 7.750e-29 Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 1
Query: 166 VNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAA 528
VN +Y + AQ A QI FYF+ +NL +DIFLRQH+D G++P+AFV +F V +Y ++ + S+T+E+DE NE +RLR GWE W+ PN GG GVPRYIKVT + + A
Sbjct: 109 VNGVYVPNVDTRVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVEGYVPLAFVGSFQAVYAVHQDYESLIEAMKHSETLELDEANEKVRLRNGWEKWVWPNIEGGYGVPRYIKVTEGENIVA 229
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A5D6YKR8_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YKR8_9STRA) HSP 1 Score: 120 bits (302), Expect = 9.120e-28 Identity = 65/144 (45.14%), Postives = 88/144 (61.11%), Query Frame = 1
Query: 100 GGGASRRGRNRTQNDDPSRMNGVNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAAA 531
GGG RG R+ + + + +NGV Y + AQ A QI FYFS +NL +DIFLRQH+D GF+P+AFV +F V A +Y ++ + S+++E+D ENE +RLR GW+ WL PN GG GVPRYIK AA+
Sbjct: 89 GGG---RGPRRSYDSNGAYVNGV---YVPNTDPKLTAQWAKSQIEFYFSPDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVFAAHQDYPSLLEAMKDSESVELDAENEKVRLRDGWQKWLWPNADGGYGVPRYIKAAGESASAAS 226
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A7S1UC17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC17_9STRA) HSP 1 Score: 120 bits (301), Expect = 9.220e-28 Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 190 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKV 504
ENR A AV+ I FS +LC D +LRQ++D G+IP+AFVAN+P VA+ GA Y D++ G++ S+ +E+D ENETMRLR W+ WL P+ GGMG PRY+KV
Sbjct: 76 ENRHLFAASAVRAIEMTFSPNHLCTDEWLRQNMDVEGYIPVAFVANYPHVAQYGALYEDLLSGIASSEILELDAENETMRLRENWQQWLFPDGKGGMGCPRYVKV 180
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: H3GP14_PHYRM (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP14_PHYRM) HSP 1 Score: 119 bits (298), Expect = 1.680e-27 Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 208 AQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAAA 531
AQ A QI FYF+ +NL +DIFLRQH+D GF+P+AFV +F V +Y ++ + S TME+DE+NE +RLR GW+ W+ PN GG GVPRYIK+ +T A A
Sbjct: 119 AQWAKNQIEFYFTNDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKNSDTMELDEQNEKIRLRQGWQTWVWPNADGGYGVPRYIKLAENETPAEA 226
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A4D9CXU2_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXU2_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.000e-27 Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 190 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQ-SQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDT 519
E R Y A +AVQQI +YFSV+NLC+D +LR HLD+ G++P+AF+ NFP VA A+Y +IV+ L + S +E DE NET+RL+ WLLPN GG+G PR++K APDT
Sbjct: 296 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLAFICNFPTVASFAADYLEIVKTLQEVSSVLEYDEANETLRLKEKATAWLLPNGRGGVGCPRWLK-QAPDT 405 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig147.2.1 >prot_P-wetherbeei_contig147.2.1 ID=prot_P-wetherbeei_contig147.2.1|Name=mRNA_P-wetherbeei_contig147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=266bp MNGVNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIback to top mRNA from alignment at P-wetherbeei_contig147:1138..2773- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig147.2.1 ID=mRNA_P-wetherbeei_contig147.2.1|Name=mRNA_P-wetherbeei_contig147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1636bp|location=Sequence derived from alignment at P-wetherbeei_contig147:1138..2773- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig147:1138..2773- >mRNA_P-wetherbeei_contig147.2.1 ID=mRNA_P-wetherbeei_contig147.2.1|Name=mRNA_P-wetherbeei_contig147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig147:1138..2773- (Phaeothamnion wetherbeei SAG_119_79)back to top |