mRNA_P-wetherbeei_contig147.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig147.2.1
Unique NamemRNA_P-wetherbeei_contig147.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: D8LK53_ECTSI (HTH La-type RNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK53_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 6.470e-36
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 1
Query:  190 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGG-MGVPRYIKV 504
            E +AY   LAV+QI FYF+VENLC+DIF+R ++D+ G+IPIAFVANFPGVAR G E  DI  G+  S T++VD ENETMR+R GWE WLLPN   G  GVPRYIKV
Sbjct:  124 EQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKV 229          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A836CAE4_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.370e-35
Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = 1
Query:  187 AENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAAA 531
            AE +  AA+ AV+Q+ +YFSV NLC D+F+R ++D  G+IP+AFVANFPG A  GAE+ DI+  L  S+ +E DE NETMRLR GW+ W+LPN  GG+GVPRYIK++  +    A
Sbjct:    4 AEAKKMAAEYAVKQMEWYFSVHNLCSDVFMRSYMDTEGYIPVAFVANFPGCASLGAEFTDILEALKSSEMLEFDEANETMRLREGWDMWILPNASGGLGVPRYIKLSEDEAAKIA 118          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: K8ZBX0_NANGC (Rna-binding la domain protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZBX0_NANGC)

HSP 1 Score: 125 bits (313), Expect = 4.500e-29
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  190 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQ-SQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDT 519
            E R Y A +AVQQI +YFSV+NLC+D +LR HLD+ G++P+A + NFP VA   A+Y++IV+ L + S  +E DE NET+RL+     WLLPN  GGMG PR++K  APDT
Sbjct:   54 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLK-QAPDT 163          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: D0NQG1_PHYIT (HTH La-type RNA-binding domain-containing protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NQG1_PHYIT)

HSP 1 Score: 123 bits (309), Expect = 5.740e-29
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 1
Query:  166 VNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLA 525
            VN +Y    +    AQ A  QI FYF+ +NL +DIFLRQH+D  GF+P+AFV +F  V     +Y  ++  + QS+T+E+DE+NE +RLR GW+ W+ PN  GG GVPRYIK+   + LA
Sbjct:  110 VNGVYVPTPDLKVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKQSETVELDEQNEKIRLRQGWQMWVWPNAEGGYGVPRYIKLAEDEALA 229          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: G4ZF40_PHYSP (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZF40_PHYSP)

HSP 1 Score: 123 bits (308), Expect = 7.370e-29
Identity = 63/139 (45.32%), Postives = 87/139 (62.59%), Query Frame = 1
Query:  100 GGGASRRGRNRTQNDDPSRMNGVNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPD 516
            G G    GR +  +++ +  NGV   Y    +    AQ A  QI FYF+ +NL +DIFLRQH+D  GF+P+AFV +F  V     +YA ++  + QS+T+E+DE+NE +RLR GW+ W+ PN  GG GVPRYIKV   D
Sbjct:   92 GNGGRFGGRRQNGDNNGAYYNGV---YVPTPDVKVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYASLLEAVKQSETLELDEQNEKIRLREGWQKWVWPNAEGGYGVPRYIKVADKD 227          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A484DZL2_BRELC (HTH La-type RNA-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZL2_BRELC)

HSP 1 Score: 123 bits (308), Expect = 7.750e-29
Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  166 VNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAA 528
            VN +Y    +    AQ A  QI FYF+ +NL +DIFLRQH+D  G++P+AFV +F  V     +Y  ++  +  S+T+E+DE NE +RLR GWE W+ PN  GG GVPRYIKVT  + + A
Sbjct:  109 VNGVYVPNVDTRVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVEGYVPLAFVGSFQAVYAVHQDYESLIEAMKHSETLELDEANEKVRLRNGWEKWVWPNIEGGYGVPRYIKVTEGENIVA 229          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A5D6YKR8_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YKR8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 9.120e-28
Identity = 65/144 (45.14%), Postives = 88/144 (61.11%), Query Frame = 1
Query:  100 GGGASRRGRNRTQNDDPSRMNGVNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAAA 531
            GGG   RG  R+ + + + +NGV   Y    +    AQ A  QI FYFS +NL +DIFLRQH+D  GF+P+AFV +F  V  A  +Y  ++  +  S+++E+D ENE +RLR GW+ WL PN  GG GVPRYIK       AA+
Sbjct:   89 GGG---RGPRRSYDSNGAYVNGV---YVPNTDPKLTAQWAKSQIEFYFSPDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVFAAHQDYPSLLEAMKDSESVELDAENEKVRLRDGWQKWLWPNADGGYGVPRYIKAAGESASAAS 226          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A7S1UC17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC17_9STRA)

HSP 1 Score: 120 bits (301), Expect = 9.220e-28
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  190 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKV 504
            ENR   A  AV+ I   FS  +LC D +LRQ++D  G+IP+AFVAN+P VA+ GA Y D++ G++ S+ +E+D ENETMRLR  W+ WL P+  GGMG PRY+KV
Sbjct:   76 ENRHLFAASAVRAIEMTFSPNHLCTDEWLRQNMDVEGYIPVAFVANYPHVAQYGALYEDLLSGIASSEILELDAENETMRLRENWQQWLFPDGKGGMGCPRYVKV 180          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: H3GP14_PHYRM (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP14_PHYRM)

HSP 1 Score: 119 bits (298), Expect = 1.680e-27
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 1
Query:  208 AQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAAA 531
            AQ A  QI FYF+ +NL +DIFLRQH+D  GF+P+AFV +F  V     +Y  ++  +  S TME+DE+NE +RLR GW+ W+ PN  GG GVPRYIK+   +T A A
Sbjct:  119 AQWAKNQIEFYFTNDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKNSDTMELDEQNEKIRLRQGWQTWVWPNADGGYGVPRYIKLAENETPAEA 226          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A4D9CXU2_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXU2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.000e-27
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  190 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQ-SQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDT 519
            E R Y A +AVQQI +YFSV+NLC+D +LR HLD+ G++P+AF+ NFP VA   A+Y +IV+ L + S  +E DE NET+RL+     WLLPN  GG+G PR++K  APDT
Sbjct:  296 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLAFICNFPTVASFAADYLEIVKTLQEVSSVLEYDEANETLRLKEKATAWLLPNGRGGVGCPRWLK-QAPDT 405          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK53_ECTSI6.470e-3665.09HTH La-type RNA-binding domain-containing protein ... [more]
A0A836CAE4_9STRA2.370e-3554.78HTH La-type RNA-binding domain-containing protein ... [more]
K8ZBX0_NANGC4.500e-2954.05Rna-binding la domain protein (Fragment) n=2 Tax=N... [more]
D0NQG1_PHYIT5.740e-2947.50HTH La-type RNA-binding domain-containing protein ... [more]
G4ZF40_PHYSP7.370e-2945.32HTH La-type RNA-binding domain-containing protein ... [more]
A0A484DZL2_BRELC7.750e-2947.11HTH La-type RNA-binding domain-containing protein ... [more]
A0A5D6YKR8_9STRA9.120e-2845.14HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S1UC17_9STRA9.220e-2853.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
H3GP14_PHYRM1.680e-2750.93HTH La-type RNA-binding domain-containing protein ... [more]
A0A4D9CXU2_9STRA2.000e-2754.05HTH La-type RNA-binding domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig147contigP-wetherbeei_contig147:1138..2773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK53
PFAMsLa
Model size1386
Max annot lvl2759|Eukaryota
KEGG koko:K18757
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.18e-39
EggNOG OGsCOG5193@1|root,KOG2590@2759|Eukaryota
Ec32 ortholog descriptionRNA-binding protein Lupus La
Ec32 orthologEc-06_008220.1
DescriptionLa ribonucleoprotein domain family member
Cds size798
COG categoryJO
BRITEko00000,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186030.6659398-UTR-P-wetherbeei_contig147:1137..15691683186030.6659398-UTR-P-wetherbeei_contig147:1137..1569Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig147 1138..1569 -
1683186030.6961775-UTR-P-wetherbeei_contig147:2617..27731683186030.6961775-UTR-P-wetherbeei_contig147:2617..2773Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig147 2618..2773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186030.6768637-CDS-P-wetherbeei_contig147:1569..21741683186030.6768637-CDS-P-wetherbeei_contig147:1569..2174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig147 1570..2174 -
1683186030.6859353-CDS-P-wetherbeei_contig147:2424..26171683186030.6859353-CDS-P-wetherbeei_contig147:2424..2617Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig147 2425..2617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig147.2.1prot_P-wetherbeei_contig147.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig147 1570..2617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig147.2.1

>prot_P-wetherbeei_contig147.2.1 ID=prot_P-wetherbeei_contig147.2.1|Name=mRNA_P-wetherbeei_contig147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=266bp
MNGVNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFI
PIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWL
LPNHYGGMGVPRYIKVTAPDTLAAADAADTAAPAVAANSAAPGEVKAAEE
AAVEAAVEAAVAAEAGKMVEAAVAEADARKAPETGGAAPVAEPPVLASGA
NEPTVLPEEPAAAEEAEHVCIDKTGAASDDAEPAVVAAAAADEAVAAPIE
AAASASAEEKQEERP*
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mRNA from alignment at P-wetherbeei_contig147:1138..2773-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig147.2.1 ID=mRNA_P-wetherbeei_contig147.2.1|Name=mRNA_P-wetherbeei_contig147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1636bp|location=Sequence derived from alignment at P-wetherbeei_contig147:1138..2773- (Phaeothamnion wetherbeei SAG_119_79)
GGACGCCAAAAGAGAGGGAATACTCCTGATAACAGAGGTGCGAACGATGG CGGAAACAGCGGTCAGCCTCGTGGACAGCGGCGCAGCGGACGGAGTGGTG GAGGTGGAGCAAGTCGCCGAGGCCGGAATCGCACCCAGAACGACGATCCA TCGCGCATGAACGGGGTGAACACAATGTACCAATCAGCAGAGAACCGCGC GTACGCTGCGCAGCTCGCGGTTCAGCAGATCACCTTTTACTTCAGCGTCG AGAACCTCTGCAAGGACATATTCCTCCGGCAGCATTTGGACCAGGCGGGC TTCATTCCGATCGCGTTCGTCGCCAACTTCCCTGGAGTCGCCAGAGCAGG TAAATTGCTAGTTGTGGGAGAGCTCTAGTGCTTCCGGCGCTACGAGCGTA AATACGGTGCTGTAGTCACCTTTGCGGCTACCGTAAATTCATTTGTTGCG AAAAGTTTCTCCCCGGTCTTCGGTCAGTCGGATTAACACACTTCAATAAT TTCCAGTTTGACATTTTTCCGGAGACCGCTTAAGCCTCCCTGCTAAGAAT GCGATCCTCCCATCGTGTAAACTTTTGCATGTACCTTGTCCTCGTGCAGG TGCAGAGTACGCTGACATTGTTCGCGGACTGTCCCAGAGCCAGACTATGG AGGTAGACGAGGAGAACGAGACTATGCGACTGCGGTTCGGGTGGGAGGGC TGGCTGCTGCCGAACCACTACGGCGGCATGGGGGTACCCCGGTACATCAA AGTCACCGCCCCCGACACTTTAGCGGCGGCGGATGCGGCGGATACGGCGG CGCCGGCCGTGGCGGCCAATTCAGCGGCGCCCGGAGAGGTGAAGGCGGCG GAGGAGGCGGCAGTAGAGGCGGCGGTAGAGGCGGCGGTAGCGGCGGAGGC GGGAAAAATGGTGGAGGCAGCTGTGGCAGAAGCAGATGCGAGGAAGGCGC CGGAGACGGGCGGGGCGGCGCCTGTGGCGGAGCCGCCGGTGCTCGCTAGC GGCGCGAACGAGCCGACGGTGCTTCCGGAGGAGCCTGCTGCTGCCGAGGA GGCGGAACACGTTTGCATTGACAAGACGGGTGCAGCCTCCGACGACGCCG AGCCCGCGGTGGTAGCTGCGGCGGCGGCGGACGAGGCGGTCGCCGCTCCC ATCGAGGCTGCTGCTTCTGCCTCGGCAGAGGAGAAGCAGGAGGAGCGGCC GTGATGGCAAAGCGTGTTTTGTGACGATGCCGCGGCTGTGGCGGTTGCTG CCACCATTCGGTGGGGGGCCAGCGGGCTAGCGTTGACGGGGTAGCGGGAT AGGAGGAAGCAGGGAAAGCGCGGAAAGGATTGCGCGTGTGGGACTACTAT CTGAATTGGGTCGGGTCGGGGTAGGGCAGGTGCATGGAAATTCCTTCTTC TTATCCTTTGCAAATTTCTCTCGGCGAAAAAAGGCGGCGGAGTGGCGGCG GCCCGTCAAATCGCCGTTGCTGCGTGGTGAGCGGGGGAGGCGTGGCGAGG AGCGGTGAGGCGCGCCTGTATGTGCGAGCCCGCTGTGTGCACACGGGCGG GCGGGTGGACAAAGGGGAAGAATGGGCTGGCGGGAATACGGGGAAGGAAG GCATATCGCTGTAAGCTGAAATTACTTGTGGTCCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig147:1138..2773-

>mRNA_P-wetherbeei_contig147.2.1 ID=mRNA_P-wetherbeei_contig147.2.1|Name=mRNA_P-wetherbeei_contig147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig147:1138..2773- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGGGGTGAACACAATGTACCAATCAGCAGAGAACCGCGCGTACGC
TGCGCAGCTCGCGGTTCAGCAGATCACCTTTTACTTCAGCGTCGAGAACC
TCTGCAAGGACATATTCCTCCGGCAGCATTTGGACCAGGCGGGCTTCATT
CCGATCGCGTTCGTCGCCAACTTCCCTGGAGTCGCCAGAGCAGGTGCAGA
GTACGCTGACATTGTTCGCGGACTGTCCCAGAGCCAGACTATGGAGGTAG
ACGAGGAGAACGAGACTATGCGACTGCGGTTCGGGTGGGAGGGCTGGCTG
CTGCCGAACCACTACGGCGGCATGGGGGTACCCCGGTACATCAAAGTCAC
CGCCCCCGACACTTTAGCGGCGGCGGATGCGGCGGATACGGCGGCGCCGG
CCGTGGCGGCCAATTCAGCGGCGCCCGGAGAGGTGAAGGCGGCGGAGGAG
GCGGCAGTAGAGGCGGCGGTAGAGGCGGCGGTAGCGGCGGAGGCGGGAAA
AATGGTGGAGGCAGCTGTGGCAGAAGCAGATGCGAGGAAGGCGCCGGAGA
CGGGCGGGGCGGCGCCTGTGGCGGAGCCGCCGGTGCTCGCTAGCGGCGCG
AACGAGCCGACGGTGCTTCCGGAGGAGCCTGCTGCTGCCGAGGAGGCGGA
ACACGTTTGCATTGACAAGACGGGTGCAGCCTCCGACGACGCCGAGCCCG
CGGTGGTAGCTGCGGCGGCGGCGGACGAGGCGGTCGCCGCTCCCATCGAG
GCTGCTGCTTCTGCCTCGGCAGAGGAGAAGCAGGAGGAGCGGCCGTGA
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