mRNA_P-wetherbeei_contig1467.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1467.1.1
Unique NamemRNA_P-wetherbeei_contig1467.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Match: A0A835YU89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU89_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.330e-57
Identity = 141/330 (42.73%), Postives = 185/330 (56.06%), Query Frame = 1
Query:  442 NPQAAKEAIGIALEKATASAKELTELALELTEKAS-----VAQELTGRRKVKDNEESFTVTTYFFGKDREFWEDLERNGVSPRRVFLYGTLGAGIAVGGNLFGLTSSLLGLAPEAAGKLRLDSIYPVNGFKRYVDNED------GYELLLPQDWVADPA----------------VALQDERDRVRPLDPLSVAE-------IQRRQRK-RGGIRPD--------------------AAFGPPGGXXXXXXXXXXSPRFATENVSVIKSPLQPGFTLLGTLGPPQEAAAKLLATVIAPPGSGKEATLVNAFAERRGAGT--VYQFEYTIR 1260
            +P+  +E    A+E  T +     E A ++  K       VA    G+ +   ++ESF+VTTYFFGKD EFWED++RNGV PRR FLY  L A +AVGGNLFG+TS+LLG AP+ A + +LD +YPV GFKR V+  +      G+E + P +W+AD A                VAL ++ +RVR LDP SV +       ++RRQR+ RGG R D                    AAFGPPG               A ENVSV++S L+ GF+L GTLG P+ AA +LL   IAP GSG+EA L++A AE R  G   VY FEYTI+
Sbjct:   21 DPEEMREMSKAAIEAVTKAGVNAEEAARDIAVKIGEAGLDVATGNLGKNQPSLDDESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGAAPKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLADQAXXXXXXXXXXXXXXXAVALAEQAERVRQLDPPSVEDAVRVEDAVRRRQRQVRGGKRQDRQSHVEDAVRRRRGRALVPLAAFGPPGASGAGA---------ARENVSVVRSALERGFSLRGTLGAPEAAARRLLDEAIAPEGSGREAELLSAVAEARAGGVPEVYVFEYTIK 341          
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Match: D8LPY6_ECTSI (PsbP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY6_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 3.360e-56
Identity = 126/273 (46.15%), Postives = 173/273 (63.37%), Query Frame = 1
Query:  478 LEKATASAKELTELALELTEKASVAQELT-----GRRKVKDNEES--FTVTTYFFGKDREFWEDLERNGVSPRRVFLYGTLGAGIAVGGNLFGLTSSLLG-LAPEAAGKLRLDSIYPVNGFKRYVDNEDGYELLLPQDWVADPAVALQDERDRVRPLDPL--SVAEIQRRQRKRGGIRPDAAFGPPGGXXXXXXXXXXSPRFATENVSVIKSPLQPGFTLLGTLGPPQEAAAKLLATVIAPPGSGKEATLVNAFAERRG-AGTVYQFEYTIRG 1263
            LEKATA   E TE+ L+ +  A++A+ +      G+  + + EE+  F V+TYFFGK+ E W+D+  NGV+  R   Y  LG  +A+GGNLFG+TS+LLG +APEA+  LR+D ++P+ GFKR+   EDGYE + P  WV D  +AL+ +RD    L+ L  S A + R +++R    P+ AFGP GG                ENVSV+KS L PGF+L  TLG P+EAA K+L+TVIAPPGSG+E  L+ AF + R   G VYQFEY ++G
Sbjct:  203 LEKATA---ESTEMVLD-SAAAALAKGIDKVVNEGKDAIPEGEETEKFQVSTYFFGKENELWDDMRANGVTRERFVRYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLALRRQRD----LEDLRASPAAVARARQRRSSSAPEVAFGPQGGD-------------GIENVSVVKSELMPGFSLKRTLGDPKEAAEKILSTVIAPPGSGREWELLEAFEDNREPGGLVYQFEYRVQG 454          
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Match: A0A6H5KJV3_9PHAE (PsbP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV3_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 3.530e-56
Identity = 129/273 (47.25%), Postives = 172/273 (63.00%), Query Frame = 1
Query:  478 LEKATASAKELTELALELTEKASVAQELT-----GRRKVKDNEES--FTVTTYFFGKDREFWEDLERNGVSPRRVFLYGTLGAGIAVGGNLFGLTSSLLG-LAPEAAGKLRLDSIYPVNGFKRYVDNEDGYELLLPQDWVADPAVALQDERDRVRPLDPL--SVAEIQRRQRKRGGIRPDAAFGPPGGXXXXXXXXXXSPRFATENVSVIKSPLQPGFTLLGTLGPPQEAAAKLLATVIAPPGSGKEATLVNAFAERRG-AGTVYQFEYTIRG 1263
            LEKATA   E TE+ L+ +  A++A+ +      GR  + + EE+  F V+TYFFGK+ E W D+  NGV+  R  LY  LG  +A+GGNLFG+TS+LLG +APEA+  LR+D ++P+ GFKR+   EDGYE + P  WV D  +AL+ +RD    L+ L  S A + R +++R    P+ AFGP GG               TENVSV+KS L PGF+L  TLG P+EAA K+L+TVIAPP SG+E  L  AF + R   G VYQFEY I+G
Sbjct:  299 LEKATA---ESTEMVLD-SAAAALAKGIDKVVNEGRDAIPEGEETEKFQVSTYFFGKENELWNDMRANGVTRERFVLYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFIYPDTWVGDSGLALRRQRD----LEDLRASPAAVARARQRRSSSAPEVAFGPQGGD-------------GTENVSVVKSELMPGFSLRRTLGDPKEAAEKILSTVIAPPDSGREWELFEAFEDNREPGGLVYQFEYRIQG 550          
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Match: A0A4D9CU31_9STRA (PsbP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU31_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.610e-42
Identity = 106/229 (46.29%), Postives = 130/229 (56.77%), Query Frame = 1
Query:  613 YFFGKDREFWEDLERNGVSPRRVFLYGTLGAGIAVGGNLFGLTSSLLGL--APEAAGKLRLDSIYPVNGFKRYVDNEDGYELLLPQDWVADPAVALQDERDRVRPLD-PLSVAEIQRRQ-----RKRGGIRPDAAFGPPGGXXXXXXXXXXSPRFATENVSVIKSPLQPGFTLLGTLGPPQEAAAKLLATVIAPPGSGKEATLVNAFAERRGAG------TVYQFEYTI 1257
            YFFG   EF EDL   G+S +R+ L   +   +A+G N  G+TS+LL     PE    L+LD +YPV GFKR+VD +DGYE   PQ W++D AV L D + R   L  P S ++   R      RK   +RPDAAFGPPGG                EN+SVIKS + PGF+L  TLGPP  AA  LL+T IAPPGSGK A+LV A  E R  G       VY FEY +
Sbjct:    3 YFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDLKLDVLYPVRGFKRFVDTDDGYEFRYPQSWLSDQAVLLADTQARTATLSSPSSPSDRPPRAPPSSTRK---VRPDAAFGPPGGNRE-------------ENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVASLVMAQEETRDIGGKTLERKVYVFEYLV 215          
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Match: K8YRA7_NANGC (PsbP domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YRA7_NANGC)

HSP 1 Score: 160 bits (405), Expect = 4.060e-41
Identity = 104/230 (45.22%), Postives = 127/230 (55.22%), Query Frame = 1
Query:  601 TVTTYFFGKDREFWEDLERNGVSPRRVFLYGTLGAGIAVGGNLFGLTSSLLGL--APEAAGKLRLDSIYPVNGFKRYVDNEDGYELLLPQDWVADPAVALQDERDRVRPLD-PLSVAEIQRRQRKRG--GIRPDAAFGPPGGXXXXXXXXXXSPRFATENVSVIKSPLQPGFTLLGTLGPPQEAAAKLLATVIAPPGSGKEATLVNAFAERRGAG------TVYQFEYTI 1257
            T   YFFG   EF EDL   G+S +R+ L   +   +A+G N  G+TS+LL     PE     +LD +YPV GFKR+VD EDGYE   PQ W++D A+ L D + R   L  P S ++   R        +RPDAAFGPPGG                EN+SVIKS + PGF+L  TLGPP  AA  LL+T IAPPGSGK A LV A  E R  G       VY FEY +
Sbjct:  100 TAKEYFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGGNRE-------------ENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLV 316          
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Match: A0A7R9UDX8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDX8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.730e-40
Identity = 103/225 (45.78%), Postives = 126/225 (56.00%), Query Frame = 1
Query:  592 ESFTVTTYFFGKDREFWEDLERNGVSPRRVFLYGTLGAGIAVGGNLFGLTSSLLGLAPEAAGKLRLDSIYPVNGFKRYVDNEDGYELLLPQDWVADPAVALQDERDRV-RPLDPLSVAEIQRRQRKRGGIRPDAAFGPPGGXXXXXXXXXXSPRFATENVSVIKSPLQPGFTLLGTLGPPQEAAAKLLATVIAPPGSGKEATLVNAFAERRGAGTVYQFEYTIRG 1263
            E  ++  Y FGK  E   DL   G S  R+     L + +A GGNL G+TS+ L   P  A  L LD +YPV GFKRY D ED +E + P  W+ D AV L     R   P +P+   +I RR R   G+ P  AFGP G               A ENVSVIK  L PGF+L GTLG P+EAA KLL + IAPPGSGK+ATLV A A RR +   Y+FE+T+ G
Sbjct:   74 EDVSLKDYVFGKPGELKRDLGALGTSVERIAASIFLSSVVAFGGNLGGVTSAALSTMPVQARSLGLDLLYPVAGFKRYRDPEDRFEFIYPYRWLEDQAVVLARTTARAGNPAEPILGMKIPRRVR---GVIPRVAFGPAGRED------------ALENVSVIKQTLLPGFSLRGTLGEPEEAAQKLLDSSIAPPGSGKDATLVRAQAARRNSLEEYEFEWTVEG 283          
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Match: A0A7S1HVX3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HVX3_9EUGL)

HSP 1 Score: 145 bits (367), Expect = 7.160e-37
Identity = 95/209 (45.45%), Postives = 121/209 (57.89%), Query Frame = 1
Query:  592 ESFTVTTYFFGKDREFWEDLERNGVSPRRVFLYGTLGAGIAVGGNLFGLTSSLLGLAPE----AAGKLRLDSIYPVNGFKRYVDNEDGYELLLPQDWVADPAVALQDERDRVRPLDPLSVAEIQRRQRKRGGIRPDAAFGPPGGXXXXXXXXXXSPRFATENVSVIKSPLQPGFTLLGTLGPPQEAAAKLLATVIAPPGSGKEATLVNA 1206
            E+ +++ Y FGK  EF  DLE  G +PRR+ L       +A+GGN  G+TS LL L PE    A G   LD  YPV G KRY  ++ GY+ + PQ+WVAD AVAL  ++  V+ LDP S     RR+ +   + PD AFGP G                +ENVSVI S +  GF+L GTLGPP +AA  LL TV+AP  SGK ATL+ A
Sbjct:   62 EADSLSEYVFGKPGEFQRDLELVGTTPRRLLLGAGGATALALGGNFVGVTSGLLSLLPEDTIQATG---LDQAYPVRGVKRYRSDQLGYDFVYPQEWVADQAVALAKQQLGVQSLDPASP----RRKPRAPQVIPDCAFGPMGNLNRQGRNT------TSENVSVIASDVMAGFSLQGTLGPPDKAAQVLLDTVLAPANSGKHATLLGA 257          
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Match: A0A7S0EAT0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EAT0_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 8.800e-33
Identity = 92/206 (44.66%), Postives = 114/206 (55.34%), Query Frame = 1
Query:  667 SPRRVFLYGTLGAGIAVGGNLFGLTSSLLGLAPEAAGKLRLDSIYPVNGFKRYVDNEDGYELLLPQDWVADPAVALQ--DERDRVRPLDPLSVAEIQRRQRKRGGIRPDAAFGPPGGXXXXXXXXXXSPRFATENVSVIKSPLQPGFTLLGTLGPPQEAAAKLLATVIAPPGSGKEATLVNAFAERRGAGT---VYQFEYTIRGTA 1269
            SPRR+         IA+  N  G+TS LL L PEAA + RLD  YPV GFKR+ D +  Y  + P  +VAD  V L+  D     R  DPL  A   R         PD AFGPPG               A EN+SV+  PL+PG +LLGTLGPP++AA KLL   IA PG  +E TL++A +ERR AG+   +Y FEY +RG A
Sbjct:    1 SPRRIATATLSSTAIALAANFLGVTSGLLSLFPEAARQQRLDVAYPVRGFKRHFDPQGRYTFIFPMRYVADQTVYLRNADAAYSRRTQDPLLAASGLRATPAAKSSGPDVAFGPPG-------------TSAEENLSVVSGPLRPGSSLLGTLGPPEQAADKLLRERIAKPGE-REVTLLHA-SERRSAGSGLPLYAFEYQVRGLA 191          
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Match: A0A8J2X277_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X277_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.210e-32
Identity = 95/227 (41.85%), Postives = 126/227 (55.51%), Query Frame = 1
Query:  592 ESFTVTTYFFGKDREFWEDLERNGVSPRRVFLYGTLGAGIAVGGNLFGLTSSLLGLAP----EAAGKLRLDSIYPVNGFKRYVDNEDGYELLLPQDWVADPAVALQDERDRVRPLDPLSVAEIQRRQRKRGGIRPDAAFGPPGGXXXXXXXXXXSPRFATENVSVIKSPLQPGFTLLGTLGPPQEAAAKLLATVIAPPGSGKEATLVNAFAERRGAGTVYQFEYTIR 1260
            E     TY FGK  E   D+ R G SPRR+ L+G LG  IA+ G+LF LTS+LL +AP    +AA + RLD+ YP+  FKRY+D+E G+E+  P+ W+AD A+ +   R + R       AE   R RK+ G    A FGPPGG                EN+SV +SP+  G  L   LG P E A +LL T +APP SGK+ TL+ A     G+   Y FEY ++
Sbjct:   58 EKVDAMTYVFGKPGELQGDMARMGTSPRRLALFGLLGLFIALAGDLFRLTSTLLRIAPGGVQDAARRARLDTYYPIGDFKRYIDDEYGFEVRYPEMWLADQAIYVS--RMQARTGAGAVDAEALLRSRKQKGPAALAGFGPPGGGKF-------------ENLSVFRSPVMAGLKLRN-LGTPTEFAQRLLDTAVAPPESGKKTTLLAATERADGS---YAFEYCLQ 265          
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Match: A0A0G4GW09_VITBC (PsbP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GW09_VITBC)

HSP 1 Score: 134 bits (337), Expect = 7.130e-32
Identity = 93/213 (43.66%), Postives = 120/213 (56.34%), Query Frame = 1
Query:  643 EDLERNGVSPRRVFLYGTLGAGIAVGGNLFGLTSSLLGLAPEAAGKLRLDSIYPVNGFKRYVDNEDGYELLLPQDWVADPAVALQDERDRVRPLDPLSVAEIQRRQRKRGGIR---PDAAFGPPGGXXXXXXXXXXSPRFATENVSVIKSPLQ--PGFTLLGTLGPPQEAAAKLLATVIAPPGSGKEATLVNAFAERRG-AGTVYQFEYTIRG 1263
            +++E + ++PRR FL     A +A+G NLFG+TS+LL L+PE A KLRLD IYP++GFKRYV+  DGY   L       PA     E        PL+ +  + R  KR   +   PD AFGPPGG              A ENVSV+KS L+          LGPP++AA  LL   IAP GSGK A L++A +E+R   G VY FEY +RG
Sbjct:   83 QEIEPDSITPRRRFLVLLGAAVVALGANLFGITSALLRLSPEQARKLRLDVIYPIDGFKRYVNEVDGYSYRLG------PAHRYTREAAHDAARRPLAASFDEGRPVKRAAAQSEAPDVAFGPPGGGGD-----------AKENVSVVKSTLRLTDDRAFFSLLGPPKQAAETLLREAIAPEGSGKVAMLIDALSEQREPGGEVYLFEYIVRG 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1467.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YU89_9STRA1.330e-5742.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LPY6_ECTSI3.360e-5646.15PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KJV3_9PHAE3.530e-5647.25PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9CU31_9STRA4.610e-4246.29PsbP domain-containing protein n=1 Tax=Nannochloro... [more]
K8YRA7_NANGC4.060e-4145.22PsbP domain-containing protein n=2 Tax=Nannochloro... [more]
A0A7R9UDX8_9STRA2.730e-4045.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1HVX3_9EUGL7.160e-3745.45Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S0EAT0_9EUKA8.800e-3344.66Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A8J2X277_9STRA2.210e-3241.85Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A0G4GW09_VITBC7.130e-3243.66PsbP domain-containing protein n=1 Tax=Vitrella br... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1467contigP-wetherbeei_contig1467:2..2481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LPY6
Preferred namePSBP5
PFAMsPsbP
Model size1434
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
Exons4
Evalue6.13e-58
EggNOG OGs28JMB@1|root,2QS0I@2759|Eukaryota
DescriptionPsbP domain-containing protein 7 chloroplastic
Cds size1185
COG categoryS
BiGG ReactioniRC1080.CRv4_Au5_s2_g9294_t1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186029.644222-CDS-P-wetherbeei_contig1467:1..5981683186029.644222-CDS-P-wetherbeei_contig1467:1..598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1467 2..598 -
1683186029.6552951-CDS-P-wetherbeei_contig1467:991..11471683186029.6552951-CDS-P-wetherbeei_contig1467:991..1147Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1467 992..1147 -
1683186029.6641507-CDS-P-wetherbeei_contig1467:1678..17321683186029.6641507-CDS-P-wetherbeei_contig1467:1678..1732Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1467 1679..1732 -
1683186029.6733036-CDS-P-wetherbeei_contig1467:1854..22321683186029.6733036-CDS-P-wetherbeei_contig1467:1854..2232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1467 1855..2232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186029.6830757-UTR-P-wetherbeei_contig1467:2232..24811683186029.6830757-UTR-P-wetherbeei_contig1467:2232..2481Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1467 2233..2481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1467.1.1prot_P-wetherbeei_contig1467.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1467 2..2232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1467.1.1

>prot_P-wetherbeei_contig1467.1.1 ID=prot_P-wetherbeei_contig1467.1.1|Name=mRNA_P-wetherbeei_contig1467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=395bp
MQSMRVLGMFSRENRRMWTKAPQNESRPCQLLVATMPNATMRRCRGAHSP
ELTQPPPCPAAPPSNPQAAKEAIGIALEKATASAKELTELALELTEKASV
AQELTGRRKVKDNEESFTVTTYFFGKDREFWEDLERNGVSPRRVFLYGTL
GAGIAVGGNLFGLTSSLLGLAPEAAGKLRLDSIYPVNGFKRYVDNEDGYE
LLLPQDWVADPAVALQDERDRVRPLDPLSVAEIQRRQRKRGGIRPDAAFG
PPGGGAGGGGAGGGSPRFATENVSVIKSPLQPGFTLLGTLGPPQEAAAKL
LATVIAPPGSGKEATLVNAFAERRGAGTVYQFEYTIRGTAAINGGNGGNG
GDDNGSGSGTGGGSGTGGGNGGDGNSGAATTNGRAGKFYLHNLGV
back to top

mRNA from alignment at P-wetherbeei_contig1467:2..2481-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1467.1.1 ID=mRNA_P-wetherbeei_contig1467.1.1|Name=mRNA_P-wetherbeei_contig1467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2480bp|location=Sequence derived from alignment at P-wetherbeei_contig1467:2..2481- (Phaeothamnion wetherbeei SAG_119_79)
GCCGTGAAGCTCGAGGTCGACCGCGCGCGAGCGGCTCTGGAAAAGGCGAC TTCCACGATGACTCAGGAGGTGGAGGAGCGCACCGAGGTGGGAACTGCTT CTGCCGATAAATGGAAAGTTCCTCGGAAGGAAGCGAGGCGGTGACGGTGT TTCGCGGCTTTGTCCGACCGCATCTGCATGGTCATGGTTTCGCTTCTCCC CTTCTGAACGGAACGCTGACAAGGTGTTTCTGAGTTTCAATAAGAGGAAA TGCAAAGCATGCGGGTGCTGGGAATGTTTTCTCGTGAGAATCGAAGAATG TGGACAAAAGCTCCCCAGAATGAGAGCCGCCCGTGCCAGCTTTTAGTCGC AACAATGCCCAATGCTACTATGCGGCGATGCCGCGGCGCCCACTCGCCCG AGCTCACACAACCCCCCCCATGCCCCGCGGCGCCGCCGTCAAACCCGCAG GCGGCGAAAGAGGCCATTGGAATTGCCCTAGAGAAGGCGACCGCCAGCGC CAAGGAGCTGACGGAGCTGGCGCTTGAGCTGACGGAGAAGGCGAGCGTTG CGCAGGAACTAACGGGACGGCGCAAGGTCAAGGACAACGAGGAATCGTTT ACTGTGACCACTTATTTCTTTGGAAAGGTGAGAGTGTAAACCCTCCAATC AATGAGCGGCGAGTCGAGGCAAGAATAGGAAAAGTAGGTGCTGAATCTCT CTCGAACCTTCAGCTTGCCTTTTTGTTTTTCACGCCGCCCTTGACTCAGG ACCGCGAGTTCTGGGAGGACTTGGAGCGCAATGGCGTCAGCCCCCGACGT GTGGTGAGTCGGCGCGATCGATCAGTCGGTTGATTGATCGATTTGCCCTT CTTCCGGGCTGGCTTTTGCAATTGTTCCATCACCCCCGGCACTGCACCTT TTCGTCCACCGGCCGAGAAATCCGTCGCTTGTCAACGGTTCTTTTGGAAA GCGGAGAAATCGGGCATCGCGCGCAACCTTAGAATCGTATAATTTATTGC GTCCAGTCGGCCGGTTGCCTGGTAAAGCCGGGAGGGAACAATGTGTATGC GTGTGCTTGTAGCCGGCCTTAAACCTTTTGGCCTCCATTGTGCCACATGT GGCCTCCTTGCAGCCATCACCCGCTGTGGCACTTTTCCTCCCGATATTAC TTTTCCAAAGGAATGGACAGCAACAAGCGGTAGCCACAGCTGACCTCTCT TTTTCCCACTACTCTTTGCGTCCCACACCGTTTCAATCCCGATGCATCTT TCGCTGCCCCTCTTCCCCCGCCTTCCGTTCCGTTCTGTGTCCCTGCGGCG ACGGACTGGATATCGGACCTGCGACGGAGTGCAGTTCCTGTACGGAACGC TGGGCGCGGGGATTGCGGTCGGCGGCAATCTCTTCGGGTTGACGTCGAGC CTGCTGGGGCTGGCGCCCGAGGCGGCCGGCAAACTGCGGCTCGACAGCAT CTACCCCGTCAATGGGTTCAAGCGCTACGTCGACAATGAGGTAAGAGAGG GCGTTGGCGCAGAGGAACTTCTCTGCTAACCTTCGGAAAGAGCTTGTGAA ATTTGGTTGCTGCTCCGGCTCTCTTTGGATCAAGCTCCACCTCGTCATCA TAGCTTATTCCCCTAAAACGTCAACAAGGGAAGAGAGGACTGCGTCACCG GGGAAGCGAGCTTGTGTTTTATTGCTTGGCATTCTTGATGCCGCTTTTCC CTGGAGTATGCCGGCTCGTCTCCAAAGGTGGCTCTCCGCTGCAGAGCAAG GCATTGTGGACTTGCCAGCCTGAACATTTTTTTGTTTGTTTGCCCCACCC TTTTGTTTCTGCCTTTCTCTCGCCGCCGCCGCTCGCCGCTTCTGTAACAT GCTCTGCCGTTTCCCGCCGCCCGCCTCTTTCAGGACGGCTACGAGCTGCT CCTCCCGCAGGACTGGGTCGCCGACCCGGCCGTGGCGCTGCAGGACGAAC GGGACCGTGTCCGCCCGCTGGACCCTTTGAGCGTTGCTGAGATCCAGCGG CGGCAGCGGAAGCGCGGCGGCATCCGCCCAGACGCCGCCTTCGGCCCGCC GGGCGGCGGCGCCGGCGGCGGCGGGGCTGGCGGCGGCAGCCCGCGGTTCG CGACGGAGAACGTGTCGGTGATCAAATCGCCGCTGCAGCCGGGGTTCACG CTGCTGGGTACGCTGGGCCCGCCGCAGGAGGCGGCAGCCAAGCTGCTGGC GACGGTCATCGCGCCGCCAGGGTCGGGCAAGGAGGCGACGCTCGTGAACG CCTTTGCGGAGCGCCGTGGCGCCGGCACGGTGTACCAGTTTGAATACACA ATCCGCGGCACGGCCGCAATTAACGGAGGCAACGGCGGCAACGGCGGCGA CGATAATGGCAGCGGCAGCGGTACTGGCGGCGGCAGCGGTACTGGTGGCG GCAATGGTGGCGACGGTAATAGCGGCGCAGCGACAACAAACGGCAGGGCG GGGAAGTTCTACCTGCACAACCTGGGGGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1467:2..2481-

>mRNA_P-wetherbeei_contig1467.1.1 ID=mRNA_P-wetherbeei_contig1467.1.1|Name=mRNA_P-wetherbeei_contig1467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1185bp|location=Sequence derived from alignment at P-wetherbeei_contig1467:2..2481- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAAGCATGCGGGTGCTGGGAATGTTTTCTCGTGAGAATCGAAGAAT
GTGGACAAAAGCTCCCCAGAATGAGAGCCGCCCGTGCCAGCTTTTAGTCG
CAACAATGCCCAATGCTACTATGCGGCGATGCCGCGGCGCCCACTCGCCC
GAGCTCACACAACCCCCCCCATGCCCCGCGGCGCCGCCGTCAAACCCGCA
GGCGGCGAAAGAGGCCATTGGAATTGCCCTAGAGAAGGCGACCGCCAGCG
CCAAGGAGCTGACGGAGCTGGCGCTTGAGCTGACGGAGAAGGCGAGCGTT
GCGCAGGAACTAACGGGACGGCGCAAGGTCAAGGACAACGAGGAATCGTT
TACTGTGACCACTTATTTCTTTGGAAAGGACCGCGAGTTCTGGGAGGACT
TGGAGCGCAATGGCGTCAGCCCCCGACGTGTGTTCCTGTACGGAACGCTG
GGCGCGGGGATTGCGGTCGGCGGCAATCTCTTCGGGTTGACGTCGAGCCT
GCTGGGGCTGGCGCCCGAGGCGGCCGGCAAACTGCGGCTCGACAGCATCT
ACCCCGTCAATGGGTTCAAGCGCTACGTCGACAATGAGGACGGCTACGAG
CTGCTCCTCCCGCAGGACTGGGTCGCCGACCCGGCCGTGGCGCTGCAGGA
CGAACGGGACCGTGTCCGCCCGCTGGACCCTTTGAGCGTTGCTGAGATCC
AGCGGCGGCAGCGGAAGCGCGGCGGCATCCGCCCAGACGCCGCCTTCGGC
CCGCCGGGCGGCGGCGCCGGCGGCGGCGGGGCTGGCGGCGGCAGCCCGCG
GTTCGCGACGGAGAACGTGTCGGTGATCAAATCGCCGCTGCAGCCGGGGT
TCACGCTGCTGGGTACGCTGGGCCCGCCGCAGGAGGCGGCAGCCAAGCTG
CTGGCGACGGTCATCGCGCCGCCAGGGTCGGGCAAGGAGGCGACGCTCGT
GAACGCCTTTGCGGAGCGCCGTGGCGCCGGCACGGTGTACCAGTTTGAAT
ACACAATCCGCGGCACGGCCGCAATTAACGGAGGCAACGGCGGCAACGGC
GGCGACGATAATGGCAGCGGCAGCGGTACTGGCGGCGGCAGCGGTACTGG
TGGCGGCAATGGTGGCGACGGTAATAGCGGCGCAGCGACAACAAACGGCA
GGGCGGGGAAGTTCTACCTGCACAACCTGGGGGTG
back to top