mRNA_P-wetherbeei_contig1038.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1038.2.1
Unique NamemRNA_P-wetherbeei_contig1038.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1038.2.1 vs. uniprot
Match: A0A6H5JDQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.940e-17
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 2 
Query:   38 MAKSIRSKVKKKNRAEQRRLVGDPNRKRLQARSVSTLRKSLRFKSGDGIDKLKSMLATEEVHNPPVPETARHAFVFRHPNAP 283
            MAKSIRSKVKK+NR E R+ VGDP++++LQAR  + ++KS+ F +G+ + KLK ML   +  NPP  E ++  F FRHP+AP
Sbjct:    1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAP 82
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BLAST of mRNA_P-wetherbeei_contig1038.2.1 vs. uniprot
Match: D7G0M3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.260e-17
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 2 
Query:   38 MAKSIRSKVKKKNRAEQRRLVGDPNRKRLQARSVSTLRKSLRFKSGDGIDKLKSMLATEEVHNPPVPETARHAFVFRHPNAP 283
            MAKSIRSKVKK+NR E R+ VGDP++++LQAR  + ++KS+ F +G+ + KLK ML   +  NPP  E ++  F FRHP+AP
Sbjct:    1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAP 82
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BLAST of mRNA_P-wetherbeei_contig1038.2.1 vs. uniprot
Match: A0A835Z2D3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.040e-13
Identity = 37/81 (45.68%), Postives = 60/81 (74.07%), Query Frame = 2 
Query:   38 MAKSIRSKVKKKNRAEQRRLVGDPNRKRLQARSVSTLRKSLRFKSGDGIDKLKSMLATEEVHNPPVPETARHAFVFRHPNA 280
            MAKSIRSKVKK+NRA+ R+  G+P+ +++QA+  + L++++++ SG GI+KLK +L   +  NP  PE ++H+  F+HP A
Sbjct:    1 MAKSIRSKVKKRNRADMRKQYGEPHAQQIQAKCTARLQETVQYHSGPGINKLKGLLNKAQAENPLQPEVSKHSHTFKHPYA 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1038.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDQ5_9PHAE1.940e-1752.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0M3_ECTSI2.260e-1752.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z2D3_9STRA1.040e-1345.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1038contigP-wetherbeei_contig1038:6722..8076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size721
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionUncharacterised protein family UPF0642
Ec32 orthologEc-07_001560.1
Cds size558
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1038.2.1prot_P-wetherbeei_contig1038.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1038 6955..7950 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.3409958-UTR-P-wetherbeei_contig1038:6721..67561683185866.3409958-UTR-P-wetherbeei_contig1038:6721..6756Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1038 6722..6756 +
1683185866.34859-UTR-P-wetherbeei_contig1038:6952..69541683185866.34859-UTR-P-wetherbeei_contig1038:6952..6954Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1038 6953..6954 +
1683185866.377534-UTR-P-wetherbeei_contig1038:7950..80761683185866.377534-UTR-P-wetherbeei_contig1038:7950..8076Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1038 7951..8076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.3558166-CDS-P-wetherbeei_contig1038:6954..70901683185866.3558166-CDS-P-wetherbeei_contig1038:6954..7090Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1038 6955..7090 +
1683185866.3631678-CDS-P-wetherbeei_contig1038:7298..76301683185866.3631678-CDS-P-wetherbeei_contig1038:7298..7630Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1038 7299..7630 +
1683185866.3703814-CDS-P-wetherbeei_contig1038:7860..79501683185866.3703814-CDS-P-wetherbeei_contig1038:7860..7950Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1038 7861..7950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1038.2.1

>prot_P-wetherbeei_contig1038.2.1 ID=prot_P-wetherbeei_contig1038.2.1|Name=mRNA_P-wetherbeei_contig1038.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MAKSIRSKVKKKNRAEQRRLVGDPNRKRLQARSVSTLRKSLRFKSGDGID
KLKSMLATEEVHNPPVPETARHAFVFRHPNAPPPPPEEKDDDPVLLVAQA
AAVAMADVDDDGGSDGGDDETGEGVWAVDGDPSACEEGSAGDATMDVAAP
ELSDARRARDAKRQKRQRRKKFVQFVTVAEGVKGL*
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mRNA from alignment at P-wetherbeei_contig1038:6722..8076+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1038.2.1 ID=mRNA_P-wetherbeei_contig1038.2.1|Name=mRNA_P-wetherbeei_contig1038.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1355bp|location=Sequence derived from alignment at P-wetherbeei_contig1038:6722..8076+ (Phaeothamnion wetherbeei SAG_119_79)
AAATTCTTTCCGACTTGAGGAACACGCGTTGTAAGGTCAGTAGCTTTTCT
GGCAGAGGAAATTAGAACGTGAGGAGGACGAGAATCCCAGCAAATTGTGG
CCCTCTACAATCAGAATCTCACAGCAGTCTCGTCGTAGTTCTTCTCTTCT
ATACGTCCATCTTGCTCGTGCTTGACGTGCCTCTATTTCTCTGTCACCTC
CATAATCATTCTTGTTTTCGATGGTCCTCAGCGATGGCGAAGTCGATCCG
ATCCAAGGTGAAGAAGAAGAATCGAGCCGAGCAGCGGCGGCTTGTCGGCG
ACCCAAACAGGAAGCGGCTGCAGGCCCGCAGCGTTTCGACTCTTCGTAAA
TCGCTCCGCTTCAAGAGCGGTGAGAGGGAAGAAGAAAAGATAGAATAATC
GAAGGGAGAAATCAACGTCAAAACCAAAAGTATGATTCTTTTGCTGCTTT
GTTCAAGGCAGTCCTCTTCATCGGTTTCGGTTTGCCCGCGCTTTTCATCT
TGCAAGACGAAGAGAGGTTTTGTGATCTTCTCCTACCATTTCCCTACAAC
TGCCTGGGTACCACACACGGAGTGCAGGAGACGGCATCGACAAGCTAAAA
TCGATGCTCGCGACGGAGGAGGTGCACAACCCGCCGGTGCCGGAAACGGC
GCGGCACGCCTTTGTCTTCCGGCACCCGAACGCCCCGCCGCCGCCGCCGG
AGGAAAAGGACGACGACCCGGTGCTGCTCGTGGCGCAAGCCGCCGCTGTG
GCCATGGCGGACGTGGACGACGACGGCGGCAGCGACGGCGGCGATGACGA
GACTGGGGAAGGGGTGTGGGCCGTGGACGGCGACCCATCGGCCTGTGAGG
AGGGGTCGGCGGGTGACGCGACGATGGACGTCGCCGCGCCGGAGCTCTCC
GACGCAAGGGTGAGTGAACACCCCGTGGAAAAAAGAGATTGGGAAGAGTT
GTCTGGTTTTCTTTCTTCGCAGGAGTTTGTAAGAAACAGGCAACGTTCCA
TTGCGTTCTGGCTAGTAGGACTGTGAGAACAAGTCGCATTCGTTTCTCTT
ATCTCTTCGACTGCCCTCATCATCCCTATCTCTTCGGTTCTGCCGTGGTT
TTGCCGTCTCTCCCCGCACAATGGTGTATCTGTTTGCAGCGAGCAAGAGA
TGCGAAACGACAGAAGCGGCAACGACGCAAGAAATTCGTGCAATTCGTTA
CAGTGGCCGAGGGAGTAAAGGGCCTCTAACTTTGGGAAACTACGCTGGTC
GCGAGGTTATGGAAGTGGAAGGTCTGCCGTCTCGATTTTGTGGACGATGT
GCCCGGGCGGTTCGGGCAGACCATGTAAATGAGTATGACAGAAGCAGCAT
CATGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1038:6722..8076+

>mRNA_P-wetherbeei_contig1038.2.1 ID=mRNA_P-wetherbeei_contig1038.2.1|Name=mRNA_P-wetherbeei_contig1038.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig1038:6722..8076+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAGTCGATCCGATCCAAGGTGAAGAAGAAGAATCGAGCCGAGCA
GCGGCGGCTTGTCGGCGACCCAAACAGGAAGCGGCTGCAGGCCCGCAGCG
TTTCGACTCTTCGTAAATCGCTCCGCTTCAAGAGCGGAGACGGCATCGAC
AAGCTAAAATCGATGCTCGCGACGGAGGAGGTGCACAACCCGCCGGTGCC
GGAAACGGCGCGGCACGCCTTTGTCTTCCGGCACCCGAACGCCCCGCCGC
CGCCGCCGGAGGAAAAGGACGACGACCCGGTGCTGCTCGTGGCGCAAGCC
GCCGCTGTGGCCATGGCGGACGTGGACGACGACGGCGGCAGCGACGGCGG
CGATGACGAGACTGGGGAAGGGGTGTGGGCCGTGGACGGCGACCCATCGG
CCTGTGAGGAGGGGTCGGCGGGTGACGCGACGATGGACGTCGCCGCGCCG
GAGCTCTCCGACGCAAGGCGAGCAAGAGATGCGAAACGACAGAAGCGGCA
ACGACGCAAGAAATTCGTGCAATTCGTTACAGTGGCCGAGGGAGTAAAGG
GCCTCTAA
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