mRNA_P-wetherbeei_contig14538.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14538.1.1
Unique NamemRNA_P-wetherbeei_contig14538.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Match: H6WBA7_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA7_VAULI)

HSP 1 Score: 175 bits (444), Expect = 1.210e-50
Identity = 81/156 (51.92%), Postives = 110/156 (70.51%), Query Frame = 1
Query:    1 KSRRRGLHMRIQVPRRYSNRDWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHALTPSHVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTNTARNAARLSAVTMAGDEESVRLFCEYAKTFPYLLKQVLAVSKRDGEKD 468
            + +R G+ MR+Q  R +++ DW DN+ NLP S++ + I  HL FNT WA  ++  H  TP H  DD H+STVP T MA ALSLLL+FR NAAYDRFWE+RKVWG++TNT RN ARL  +T+  DEE + L+ +Y +++P+LLKQ L  ++ D E D
Sbjct:   42 RGQRNGMSMRVQSARPFASNDWLDNIKNLPASKINKDITSHLWFNTGWAVLITCIHMFTPQHYIDDFHISTVPQTLMASALSLLLIFRNNAAYDRFWESRKVWGAITNTVRNLARLGKITI-DDEEVLSLYKDYLRSYPFLLKQHLQNTRNDEELD 196          
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Match: A0A836CJD6_9STRA (Bestrophin, RFP-TM, chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD6_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.360e-50
Identity = 85/148 (57.43%), Postives = 109/148 (73.65%), Query Frame = 1
Query:   19 LHMRIQVPRRYSNRDWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHALTPSHVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTNTARNAARLSAVTMAGDEESVRLFCEYAKTFPYLLKQVLAVSKRDGE 462
            L  R++ PR +S+ DW +NVINLPKSRLL  I+ HL FNTAWAAAVS+ H +TP H FD +  +T+PH+ MA AL LLLVFR+NA+YDRFWEARKVWG +TNT RN ARL+   M+ ++ + R   EY K +P+LLKQ L  ++ D E
Sbjct:  242 LVCRLRAPRAFSSEDWLENVINLPKSRLLLSIQSHLLFNTAWAAAVSVVHGMTPEHYFDHVGDTTMPHSIMASALGLLLVFRSNASYDRFWEARKVWGCITNTTRNLARLTQSCMSDEDTTYRAMLEYLKAYPWLLKQHLQDTRDDTE 389          
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Match: A0A6H5KGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP9_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 3.430e-49
Identity = 82/147 (55.78%), Postives = 104/147 (70.75%), Query Frame = 1
Query:   28 RIQVPRRYSNRDWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHALTPSHVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTNTARNAARLSAVTMAGDEESVRLFCEYAKTFPYLLKQVLAVSKRDGEKD 468
            R++ PRRY + DW++N+ NLPKSRLL  I+ HL +NTA+A  VS+ H LTP H+ DDLHVS +PH+ M+GAL LLLVFRTNAAY+RFWEAR++WG + N  RN ARLS V +  D        EY + FP+LLKQ L   + D E D
Sbjct:   94 RVKTPRRYGSADWFENIRNLPKSRLLYNIKEHLLYNTAFAFFVSMIHYLTPQHIIDDLHVSPIPHSIMSGALGLLLVFRTNAAYNRFWEARQIWGGLINQCRNIARLSTVALGPDSPEWLEMKEYLRLFPFLLKQHLQDERNDAEMD 240          
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Match: D8LQQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ4_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 8.000e-46
Identity = 76/136 (55.88%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   61 DWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHALTPSHVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTNTARNAARLSAVTMAGDEESVRLFCEYAKTFPYLLKQVLAVSKRDGEKD 468
            DW+ N+ NLPKSRLL  I+ HL +NTA+A  VS+ H LTP H+ DDLHVS +PH+ M+GAL LLLVFRTNAAY+RFWEAR++WG + N  RN ARLS V +  D        EY + +P+LLKQ L   + D E D
Sbjct:    8 DWFANIQNLPKSRLLYNIKEHLFYNTAFAFCVSMVHYLTPQHIIDDLHVSPIPHSIMSGALGLLLVFRTNAAYNRFWEARQIWGGLINQCRNIARLSTVALGPDSPEWLEMKEYLRLYPFLLKQHLQDERDDAEMD 143          
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Match: A0A7S2V5N3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5N3_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.450e-33
Identity = 62/146 (42.47%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    4 SRRRGLHMRIQVPRRYSNRDWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHALTPSHVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTNTARNAARLSAVTMAGDEESVR-LFCEYAKTFPYLLKQVL 438
            +R+  + M +  P+RY+++DW  N++++PKS +L+ ++ H+ +NTAWAA ++  +     ++ D   ++ +PH  MA AL LLLVFRTNAAYDRFWEARKVWG+V NT+R+  R++ + +  D+ ++R  +C+    +P+LLKQ L
Sbjct:   48 ARKNSVMMAVPAPQRYTSQDWAKNLVSIPKSVVLQNVQSHVLWNTAWAAVITFLY-----NIGDLQALTPLPHQLMATALGLLLVFRTNAAYDRFWEARKVWGAVVNTSRDNVRVALIAI--DDPALRERYCQLGMLWPFLLKQHL 186          
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Match: W7TTZ2_9STRA (Bestrophin-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTZ2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.090e-29
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   31 IQVPRRYSNRDWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHALTPS-HVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTNTARNAARLSAVTM 363
            +  P+RY + DW +N+ +L  SR++++I GHL FNTAWA  V+  +   P  H+  D  +S VPH  M+ AL LLLVFRTNAAYDRFWEARKVWGSVTN  RN AR   + +
Sbjct:  148 LDPPQRYKSSDWAENLRSLFDSRIVKRISGHLLFNTAWATGVTGVYESMPQWHIGSD--ISPVPHQLMSTALGLLLVFRTNAAYDRFWEARKVWGSVTNICRNLARTGRIAL 257          
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Match: A0A0G4HYZ0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HYZ0_9ALVE)

HSP 1 Score: 120 bits (300), Expect = 6.720e-29
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   46 RYSNRDWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHALTPSHVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTNTARNAARLSAVTMAGDEESVRLFCEYAKTFPYLLKQVL 438
            RYS+ DW+ N+ ++PKS++  +I  HL  NTAWAAA++  H  +P   F D  + T+PHT +A ALSLLLVFRTNA+YDR+WEARKVWG++ N +R  A    V  A D    R    +    P+++KQ L
Sbjct:   75 RYSSEDWFQNLASIPKSKIYRRISSHLVSNTAWAAAITALHDYSPVW-FQD--IPTLPHTVLASALSLLLVFRTNASYDRWWEARKVWGAIVNKSREMATF--VFSATDPSYHRTLGAFVCLSPFVMKQHL 200          
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Match: A0A7S2V524_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V524_9STRA)

HSP 1 Score: 112 bits (281), Expect = 8.860e-27
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   31 IQVPRRYSNRDWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHALTPSHVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTNTARNAARLSAVTMAGDEESVR-LFCEYAKTFPYLLKQVL 438
            +  P R++++DW  N+  +P S +L+ I+ H  +N+AWA  ++  H+     +   L+   +PH  MA AL LLLVFRTN+AYDRFWEARKVWG+V NT R+  R+S + +  D+  +R    +    FP+LLKQ L
Sbjct:   60 VPAPPRFTSQDWAQNLWTIPSSTILKNIQSHALWNSAWAVVITYMHS---QGIIGTLNA--MPHQLMATALGLLLVFRTNSAYDRFWEARKVWGAVVNTTRDVVRVSLIAI--DDPYLRDRMVQLTMIFPFLLKQHL 189          
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Match: A0A1X6NK24_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NK24_PORUM)

HSP 1 Score: 110 bits (274), Expect = 1.600e-25
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   31 IQVPRRYSNRDWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHALTPSHVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTNTARNAARLSAVTM 363
            IQ P RYS+ DWW N+++LP+S +L +I  H+AFNT  A  V   H  TP       H+S +PH  +  AL LLL +RT+AAYDRFWEARKV G + N  RN  R++  ++
Sbjct:   90 IQRPERYSSADWWRNLVSLPQSVVLRRISSHVAFNTIVATLVVFLHQYTPDEKI--WHLSPLPHVLLGTALGLLLSYRTSAAYDRFWEARKVLGGMVNETRNIMRMAVTSL 198          
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Match: A0A0G4HAB2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HAB2_9ALVE)

HSP 1 Score: 107 bits (266), Expect = 3.880e-24
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   10 RRGLHMRIQVPR----RYSNRDWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHALTPSHVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTNTARNAA 342
            R   H+    P+    RYS+ DW +N++ +P+S +  +I  HLA NT WA  ++      P  +F D  + T PH+ M+ AL+LLLVFRTNA+YDRFWEARKVWGS+ N +R  A
Sbjct:   55 RSSAHVADDAPKSEKMRYSSEDWLENLVTIPQSNIYRRISKHLAANTIWAIFIAALDDFKPE-LFRD--IPTTPHSVMSSALALLLVFRTNASYDRFWEARKVWGSIVNKSREMA 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14538.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H6WBA7_VAULI1.210e-5051.92Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A836CJD6_9STRA1.360e-5057.43Bestrophin, RFP-TM, chloride channel-domain-contai... [more]
A0A6H5KGP9_9PHAE3.430e-4955.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQQ4_ECTSI8.000e-4655.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V5N3_9STRA4.450e-3342.47Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
W7TTZ2_9STRA3.090e-2953.57Bestrophin-like protein n=1 Tax=Nannochloropsis ga... [more]
A0A0G4HYZ0_9ALVE6.720e-2947.33Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S2V524_9STRA8.860e-2742.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1X6NK24_PORUM1.600e-2547.75Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A0G4HAB2_9ALVE3.880e-2446.09Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14538contigP-wetherbeei_contig14538:315..1545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQQ4
PFAMsBestrophin
Model size468
Max annot lvl2759|Eukaryota
KEGG koko:K08994
KEGG TC1.A.46.2
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.69e-47
EggNOG OGs2CY4M@1|root,2S20F@2759|Eukaryota
Ec32 ortholog descriptionBestrophin/UPF0187
Ec32 orthologEc-24_001890.1
DescriptionBestrophin, RFP-TM, chloride channel
Cds size444
COG categoryS
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.1516776-UTR-P-wetherbeei_contig14538:314..3381683186025.1516776-UTR-P-wetherbeei_contig14538:314..338Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14538 315..338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.163613-CDS-P-wetherbeei_contig14538:338..3741683186025.163613-CDS-P-wetherbeei_contig14538:338..374Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14538 339..374 +
1683186025.1765628-CDS-P-wetherbeei_contig14538:746..8271683186025.1765628-CDS-P-wetherbeei_contig14538:746..827Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14538 747..827 +
1683186025.1868114-CDS-P-wetherbeei_contig14538:1016..11691683186025.1868114-CDS-P-wetherbeei_contig14538:1016..1169Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14538 1017..1169 +
1683186025.196318-CDS-P-wetherbeei_contig14538:1371..15451683186025.196318-CDS-P-wetherbeei_contig14538:1371..1545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14538 1372..1545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14538.1.1prot_P-wetherbeei_contig14538.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14538 339..1545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14538.1.1

>prot_P-wetherbeei_contig14538.1.1 ID=prot_P-wetherbeei_contig14538.1.1|Name=mRNA_P-wetherbeei_contig14538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MRIQVPRRYSNRDWWDNVINLPKSRLLEKIRGHLAFNTAWAAAVSLAHAL
TPSHVFDDLHVSTVPHTTMAGALSLLLVFRTNAAYDRFWEARKVWGSVTN
TARNAARLSAVTMAGDEESVRLFCEYAKTFPYLLKQVLAVSKRDGEKD
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mRNA from alignment at P-wetherbeei_contig14538:315..1545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14538.1.1 ID=mRNA_P-wetherbeei_contig14538.1.1|Name=mRNA_P-wetherbeei_contig14538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1231bp|location=Sequence derived from alignment at P-wetherbeei_contig14538:315..1545+ (Phaeothamnion wetherbeei SAG_119_79)
AAGTCCCGGAGACGAGGACTCCACATGAGGATACAAGTGCCGCGGAGGTA CTCGAATAGGGTGAGTCAAGCGCTTCAAGTATCATCCAGCCTCCACAGTG CAGTTGGAATGCAGCTCCTTTTCAAAACTATGAGCTTTCGTGTTCGAAAA GAACCCTTTTGCGCCCAAGCGCTTCCTCTCTCTCGAGACCCTTTTTTCAC AGCGACGTGGCCCTCACCCAGTTGCAGGTTAAAACTTGCCTGATAATCTG CATTGTTTTTGTAGAGAAACTAGGCTTCCCATCCTGTTGTTCAACCAGGT TTTTTTGTCAGCAGATGACGCTATAGTATTGCTGCGTTTGACAAATTGCT TATGAGGACGCCAAGCCGCGCATACCTGCCTTGATATTTGAAAAGATAGC CTGATCCGGCTGCGACAGACACGCCTACGCAGGACTGGTGGGACAACGTC ATCAACCTGCCCAAGTCGCGCCTCCTCGAGAAGATCCGCGGCCACCTCGC CTTCAACACGGCGGTGAGAGGGAAAATGCGTTCCGATTTTGCAATCACAG AAATCCAAACCGACGCGGACCGAGCCAGCCACTTCTCTTCGCTCGAAATC AGAAATTAGACCCGATCCCTGCTTGCTCGCTCGATTCCGATTCCCTGCCC TTTCGCTTGCTCCCCCTTATTTTTCTCCTTTTGTCGTGCGTGCAAATGGC AGTGGGCGGCGGCGGTGTCGTTGGCCCACGCGCTGACGCCGTCGCACGTC TTCGACGACCTCCACGTGTCGACGGTGCCGCACACCACCATGGCCGGGGC GCTCTCTCTGCTGCTCGTCTTTCGCACCAACGCGGCTTACGATCGCTTTT GGGAGGTACGGTGGCGTAGCCAGAGAGGGTTCAGAGGTTCAGGCCTTTCC CAAGAAGTGATCCATTTTGACGTTTAAAGCTGAACTCACGCTGTGTCGTC CTCTCGGCTGCGACATCCATCCGCCTTTTCGCCTTTCTTCTCCTCCGCTA CCTGGTGGCGTCCGGCTTTCACACGGGCTGGGCCCACCACGAACACGCGA GATATAGGCCCGCAAGGTGTGGGGCAGCGTGACCAACACGGCCCGCAACG CGGCGCGGCTCTCGGCGGTGACGATGGCGGGTGACGAGGAGAGTGTCCGC CTCTTCTGCGAGTATGCCAAGACGTTCCCCTACCTCCTGAAACAGGTGCT TGCAGTGAGCAAACGGGATGGGGAGAAAGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14538:315..1545+

>mRNA_P-wetherbeei_contig14538.1.1 ID=mRNA_P-wetherbeei_contig14538.1.1|Name=mRNA_P-wetherbeei_contig14538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig14538:315..1545+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGATACAAGTGCCGCGGAGGTACTCGAATAGGGACTGGTGGGACAA
CGTCATCAACCTGCCCAAGTCGCGCCTCCTCGAGAAGATCCGCGGCCACC
TCGCCTTCAACACGGCGTGGGCGGCGGCGGTGTCGTTGGCCCACGCGCTG
ACGCCGTCGCACGTCTTCGACGACCTCCACGTGTCGACGGTGCCGCACAC
CACCATGGCCGGGGCGCTCTCTCTGCTGCTCGTCTTTCGCACCAACGCGG
CTTACGATCGCTTTTGGGAGGCCCGCAAGGTGTGGGGCAGCGTGACCAAC
ACGGCCCGCAACGCGGCGCGGCTCTCGGCGGTGACGATGGCGGGTGACGA
GGAGAGTGTCCGCCTCTTCTGCGAGTATGCCAAGACGTTCCCCTACCTCC
TGAAACAGGTGCTTGCAGTGAGCAAACGGGATGGGGAGAAAGAT
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