mRNA_P-wetherbeei_contig145.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig145.1.1
Unique NamemRNA_P-wetherbeei_contig145.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig145.1.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.470e-8
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   34 LGATLLHADGAARAAARLWMLRVVRDGLLTSQDLGLSARKQVIPLLLQHFDAADGSGGGAAERNLIFDVIERLSDLHVSGAR 279
            LGAT     GAA   AR+WMLR +RDGL TS+DL L+A K+ +PLLL   D+  G+G  A  + LI D++ R++ L  SGAR
Sbjct: 2712 LGATSASDPGAASNKARVWMLRALRDGLHTSEDLELAAGKRAVPLLLAMADSPVGNGD-AVIQELIVDILGRVASLERSGAR 2792
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BLAST of mRNA_P-wetherbeei_contig145.1.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.950e-7
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:   34 LGATLLHADGAARAAARLWMLRVVRDGLLTSQDLGLSARKQVIPLLLQHFDAADGSGGGAAERNLIFDVIERLSDLHVSGAR 279
            LGAT     GAA   AR+WMLR +RDGL TS+DL L+A K+ +PLLL   D+  G+G    +  LI D++ R++ L   G +
Sbjct: 2082 LGATSASDPGAASNKARVWMLRALRDGLRTSEDLELAAGKRAVPLLLAMADSPVGNGDVVIQE-LIVDILGRVASLEALGVK 2162
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig145.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K182_9PHAE1.470e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8A9_ECTSI4.950e-745.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig145contigP-wetherbeei_contig145:3462..5440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8A9
Preferred nameURB1
PFAMsNopRA1,Npa1
Model size1794
Max annot lvl2759|Eukaryota
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
Exons2
Evalue8.12e-08
EggNOG OGsKOG1791@1|root,KOG1791@2759|Eukaryota
EC2.5.1.54,3.6.1.52
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size1791
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186023.7863896-CDS-P-wetherbeei_contig145:3463..51421683186023.7863896-CDS-P-wetherbeei_contig145:3463..5142Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig145 3464..5142 -
1683186023.804117-CDS-P-wetherbeei_contig145:5328..54401683186023.804117-CDS-P-wetherbeei_contig145:5328..5440Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig145 5329..5440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig145.1.1prot_P-wetherbeei_contig145.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig145 3464..5440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig145.1.1

>prot_P-wetherbeei_contig145.1.1 ID=prot_P-wetherbeei_contig145.1.1|Name=mRNA_P-wetherbeei_contig145.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=597bp
GGGGGGGGSGALGATLLHADGAARAAARLWMLRVVRDGLLTSQDLGLSAR
KQVIPLLLQHFDAADGSGGGAAERNLIFDVIERLSDLHVSGARYLLNRVG
FLAWARVQLAKGVEGASSPFGGGADGGGGGDHNGEGTRICSGDPLPLPLT
CRLLRLLSSLLASGLALRTVPRLLIEEYSSLVPLVVVAAERAAAEATRAA
AAAATAAATGGTAVSSRGRRQRRGRGGHWAANGGDLDDARQFVQAAVSLL
SDVNRAVATGAAATAAAPESERHAAGVDAWRGSSVQCAGGIELCVGQAHS
LTSAVDTVVAGGETVTELCALLCSPGAVSLLLQVAADGALATSAAAVAAA
WVRDAEEVVLWCIRQAGEEQQGHGPAGLVESLLTGSVRGGGGGSADGHGG
DRDSGDGGPNSSARRALGAALLTAPVVLHRLLAAAGSTEAIYSVRQRVCV
VLMMLWRGGAAAAAGRDRAAPQEQLLAALVPALWRAARPAHLPASVSRDG
VTSAALSVDLGSDDGAAEAWIVRAALNLLMRAMALLGETFTGTSSPGAAV
AVAGVPAAVTAAAGWMQALIEGIPAGLQRTDAAVEFRRAVAEALSSF
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mRNA from alignment at P-wetherbeei_contig145:3462..5440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig145.1.1 ID=mRNA_P-wetherbeei_contig145.1.1|Name=mRNA_P-wetherbeei_contig145.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1979bp|location=Sequence derived from alignment at P-wetherbeei_contig145:3462..5440- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGGCGGCGGCGGCGGGGGATCTGGCGCCTTGGGTGCGACGCTGTT
GCATGCTGATGGGGCGGCAAGGGCCGCGGCCCGCCTCTGGATGCTACGAG
TTGTTCGCGATGGTATGTTTGTGCCCGAACCCTGTTTGAACAGCAGCATC
CATTCCAGCTTCTTCCTTTCTTGCGTGCCTTCTCCATTGTTTGCAGCCTC
ATGTTCGATATAACTCTACTCAGTGTGATGTGTTCCTGCCAACGATCCCC
TCGTCTGTTTCTCCATCATCTGTGCCTTTCTTATGACCTCAACGGCAGGG
CTGCTTACAAGCCAAGATTTGGGACTCTCGGCGCGCAAGCAGGTGATACC
TTTATTGCTGCAGCACTTTGATGCTGCGGACGGCAGCGGCGGCGGCGCAG
CAGAGCGTAACCTTATCTTCGACGTTATCGAGCGCTTGAGCGACCTGCAC
GTCTCCGGGGCACGGTACCTGCTCAACCGCGTCGGCTTCTTGGCCTGGGC
ACGCGTACAGCTCGCAAAAGGTGTCGAAGGCGCCAGCAGTCCCTTTGGCG
GCGGAGCAGACGGCGGCGGTGGCGGCGACCACAATGGGGAAGGCACGCGG
ATTTGCTCCGGCGACCCACTGCCGCTGCCGCTGACGTGCCGGCTGCTGCG
GCTGCTGAGCTCGCTGCTCGCGTCGGGCCTCGCGCTGCGGACGGTTCCGC
GGCTGCTCATCGAAGAGTATTCGTCGCTCGTGCCTCTCGTCGTGGTAGCA
GCTGAGCGGGCCGCTGCGGAGGCCACAAGGGCTGCAGCGGCGGCAGCAAC
GGCAGCGGCGACAGGCGGCACCGCGGTCAGTTCGAGGGGGCGGCGTCAAC
GCCGGGGCCGTGGCGGTCACTGGGCCGCCAATGGAGGCGATCTGGACGAC
GCGCGTCAATTCGTCCAAGCGGCAGTCTCGCTGCTGAGCGATGTTAACCG
CGCCGTTGCTACCGGCGCCGCCGCCACCGCTGCGGCCCCCGAGTCGGAAC
GGCATGCGGCGGGAGTGGATGCATGGCGCGGCTCTTCAGTCCAATGCGCC
GGCGGCATCGAACTGTGCGTCGGGCAGGCGCACTCACTGACCAGTGCCGT
CGACACCGTGGTAGCTGGAGGCGAGACGGTAACTGAACTGTGCGCTCTCC
TTTGCTCTCCGGGGGCGGTCTCACTGCTGCTCCAGGTGGCAGCGGACGGT
GCGCTGGCAACGTCAGCAGCAGCGGTGGCAGCGGCCTGGGTAAGAGACGC
TGAGGAGGTGGTGCTGTGGTGCATTCGACAGGCTGGAGAGGAGCAGCAAG
GCCATGGTCCCGCGGGATTGGTGGAAAGCCTCCTGACTGGTAGCGTTCGT
GGCGGCGGTGGCGGCAGTGCCGACGGGCATGGCGGCGATCGTGACAGTGG
CGACGGCGGCCCCAACAGCTCGGCGCGCCGGGCGCTGGGAGCCGCGTTGC
TTACCGCGCCAGTCGTCCTGCACCGCCTGCTGGCAGCGGCCGGGTCAACA
GAGGCGATTTATTCCGTCCGCCAGCGCGTATGCGTTGTATTGATGATGCT
GTGGCGGGGTGGTGCTGCGGCGGCAGCTGGGCGAGACAGGGCAGCGCCTC
AGGAGCAATTGCTCGCCGCTCTCGTTCCGGCTCTGTGGCGAGCCGCCAGA
CCGGCTCATCTCCCGGCTTCGGTGAGCCGTGACGGTGTCACGTCGGCGGC
ATTGTCAGTCGATCTTGGCAGCGACGATGGCGCGGCCGAAGCATGGATCG
TGAGGGCCGCTCTGAACCTTTTGATGCGCGCGATGGCGCTTCTTGGAGAG
ACGTTTACCGGAACTTCGTCGCCTGGGGCAGCAGTGGCAGTGGCAGGGGT
TCCAGCGGCGGTTACGGCGGCGGCGGGCTGGATGCAAGCTTTGATAGAAG
GCATTCCGGCCGGATTGCAGAGGACAGACGCTGCCGTCGAGTTCCGCCGC
GCCGTCGCAGAGGCTCTCTCTTCTTTTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig145:3462..5440-

>mRNA_P-wetherbeei_contig145.1.1 ID=mRNA_P-wetherbeei_contig145.1.1|Name=mRNA_P-wetherbeei_contig145.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1791bp|location=Sequence derived from alignment at P-wetherbeei_contig145:3462..5440- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGGCGGCGGCGGCGGGGGATCTGGCGCCTTGGGTGCGACGCTGTT
GCATGCTGATGGGGCGGCAAGGGCCGCGGCCCGCCTCTGGATGCTACGAG
TTGTTCGCGATGGGCTGCTTACAAGCCAAGATTTGGGACTCTCGGCGCGC
AAGCAGGTGATACCTTTATTGCTGCAGCACTTTGATGCTGCGGACGGCAG
CGGCGGCGGCGCAGCAGAGCGTAACCTTATCTTCGACGTTATCGAGCGCT
TGAGCGACCTGCACGTCTCCGGGGCACGGTACCTGCTCAACCGCGTCGGC
TTCTTGGCCTGGGCACGCGTACAGCTCGCAAAAGGTGTCGAAGGCGCCAG
CAGTCCCTTTGGCGGCGGAGCAGACGGCGGCGGTGGCGGCGACCACAATG
GGGAAGGCACGCGGATTTGCTCCGGCGACCCACTGCCGCTGCCGCTGACG
TGCCGGCTGCTGCGGCTGCTGAGCTCGCTGCTCGCGTCGGGCCTCGCGCT
GCGGACGGTTCCGCGGCTGCTCATCGAAGAGTATTCGTCGCTCGTGCCTC
TCGTCGTGGTAGCAGCTGAGCGGGCCGCTGCGGAGGCCACAAGGGCTGCA
GCGGCGGCAGCAACGGCAGCGGCGACAGGCGGCACCGCGGTCAGTTCGAG
GGGGCGGCGTCAACGCCGGGGCCGTGGCGGTCACTGGGCCGCCAATGGAG
GCGATCTGGACGACGCGCGTCAATTCGTCCAAGCGGCAGTCTCGCTGCTG
AGCGATGTTAACCGCGCCGTTGCTACCGGCGCCGCCGCCACCGCTGCGGC
CCCCGAGTCGGAACGGCATGCGGCGGGAGTGGATGCATGGCGCGGCTCTT
CAGTCCAATGCGCCGGCGGCATCGAACTGTGCGTCGGGCAGGCGCACTCA
CTGACCAGTGCCGTCGACACCGTGGTAGCTGGAGGCGAGACGGTAACTGA
ACTGTGCGCTCTCCTTTGCTCTCCGGGGGCGGTCTCACTGCTGCTCCAGG
TGGCAGCGGACGGTGCGCTGGCAACGTCAGCAGCAGCGGTGGCAGCGGCC
TGGGTAAGAGACGCTGAGGAGGTGGTGCTGTGGTGCATTCGACAGGCTGG
AGAGGAGCAGCAAGGCCATGGTCCCGCGGGATTGGTGGAAAGCCTCCTGA
CTGGTAGCGTTCGTGGCGGCGGTGGCGGCAGTGCCGACGGGCATGGCGGC
GATCGTGACAGTGGCGACGGCGGCCCCAACAGCTCGGCGCGCCGGGCGCT
GGGAGCCGCGTTGCTTACCGCGCCAGTCGTCCTGCACCGCCTGCTGGCAG
CGGCCGGGTCAACAGAGGCGATTTATTCCGTCCGCCAGCGCGTATGCGTT
GTATTGATGATGCTGTGGCGGGGTGGTGCTGCGGCGGCAGCTGGGCGAGA
CAGGGCAGCGCCTCAGGAGCAATTGCTCGCCGCTCTCGTTCCGGCTCTGT
GGCGAGCCGCCAGACCGGCTCATCTCCCGGCTTCGGTGAGCCGTGACGGT
GTCACGTCGGCGGCATTGTCAGTCGATCTTGGCAGCGACGATGGCGCGGC
CGAAGCATGGATCGTGAGGGCCGCTCTGAACCTTTTGATGCGCGCGATGG
CGCTTCTTGGAGAGACGTTTACCGGAACTTCGTCGCCTGGGGCAGCAGTG
GCAGTGGCAGGGGTTCCAGCGGCGGTTACGGCGGCGGCGGGCTGGATGCA
AGCTTTGATAGAAGGCATTCCGGCCGGATTGCAGAGGACAGACGCTGCCG
TCGAGTTCCGCCGCGCCGTCGCAGAGGCTCTCTCTTCTTTT
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