prot_P-wetherbeei_contig145.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig145.1.1
Unique Nameprot_P-wetherbeei_contig145.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length597
Homology
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BLAST of mRNA_P-wetherbeei_contig145.1.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.470e-8
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 0 
Query:   12 LGATLLHADGAARAAARLWMLRVVRDGLLTSQDLGLSARKQVIPLLLQHFDAADGSGGGAAERNLIFDVIERLSDLHVSGAR 93
            LGAT     GAA   AR+WMLR +RDGL TS+DL L+A K+ +PLLL   D+  G+G  A  + LI D++ R++ L  SGAR
Sbjct: 2712 LGATSASDPGAASNKARVWMLRALRDGLHTSEDLELAAGKRAVPLLLAMADSPVGNGD-AVIQELIVDILGRVASLERSGAR 2792
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BLAST of mRNA_P-wetherbeei_contig145.1.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.950e-7
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 0 
Query:   12 LGATLLHADGAARAAARLWMLRVVRDGLLTSQDLGLSARKQVIPLLLQHFDAADGSGGGAAERNLIFDVIERLSDLHVSGAR 93
            LGAT     GAA   AR+WMLR +RDGL TS+DL L+A K+ +PLLL   D+  G+G    +  LI D++ R++ L   G +
Sbjct: 2082 LGATSASDPGAASNKARVWMLRALRDGLRTSEDLELAAGKRAVPLLLAMADSPVGNGDVVIQE-LIVDILGRVASLEALGVK 2162
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig145.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K182_9PHAE1.470e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8A9_ECTSI4.950e-745.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032436Nucleolar pre-ribosomal-associated protein 1, C-terminal domainPFAMPF16201NopRA1coord: 24..104
e-value: 5.6E-9
score: 35.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 390..410

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig145contigP-wetherbeei_contig145:3464..5440 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig145.1.1mRNA_P-wetherbeei_contig145.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig145 3462..5440 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig145.1.1 ID=prot_P-wetherbeei_contig145.1.1|Name=mRNA_P-wetherbeei_contig145.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=597bp
GGGGGGGGSGALGATLLHADGAARAAARLWMLRVVRDGLLTSQDLGLSAR
KQVIPLLLQHFDAADGSGGGAAERNLIFDVIERLSDLHVSGARYLLNRVG
FLAWARVQLAKGVEGASSPFGGGADGGGGGDHNGEGTRICSGDPLPLPLT
CRLLRLLSSLLASGLALRTVPRLLIEEYSSLVPLVVVAAERAAAEATRAA
AAAATAAATGGTAVSSRGRRQRRGRGGHWAANGGDLDDARQFVQAAVSLL
SDVNRAVATGAAATAAAPESERHAAGVDAWRGSSVQCAGGIELCVGQAHS
LTSAVDTVVAGGETVTELCALLCSPGAVSLLLQVAADGALATSAAAVAAA
WVRDAEEVVLWCIRQAGEEQQGHGPAGLVESLLTGSVRGGGGGSADGHGG
DRDSGDGGPNSSARRALGAALLTAPVVLHRLLAAAGSTEAIYSVRQRVCV
VLMMLWRGGAAAAAGRDRAAPQEQLLAALVPALWRAARPAHLPASVSRDG
VTSAALSVDLGSDDGAAEAWIVRAALNLLMRAMALLGETFTGTSSPGAAV
AVAGVPAAVTAAAGWMQALIEGIPAGLQRTDAAVEFRRAVAEALSSF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032436NopRA1_C