mRNA_P-wetherbeei_contig14406.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14406.1.1
Unique NamemRNA_P-wetherbeei_contig14406.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Match: D7G036_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G036_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.060e-32
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 EKMVAPPDFKRPVQDRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIAPVDYEGNICGHTSGYEDLDNLYYISTSGYGVCVESCP 267
            +K+ APP+F  PV+DRKCTDI+F+L II MW+ MT +GI  ++ GD   L+AP DYEGN+CG   GYED   LYY +  G GVC +SCP
Sbjct:    3 DKLTAPPEFDGPVRDRKCTDIIFTLAIIIMWITMTVVGISSVQQGDVRELLAPTDYEGNLCGFDDGYEDRGKLYYANNVGSGVCEKSCP 91          
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.410e-31
Identity = 56/95 (58.95%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 EKMVAPPDFKRPVQDRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIAPVDYEGNICGHTSGYEDLDNLYYISTSGYGVCVESCPTTTDLT 285
            +K+ A P+F  PV++RKCTDI+F L II MW+ MTA+GI  I+ GD   L+AP DYEGN+CG   GYEDL  LYY +  G GVCV +CP+TTDLT
Sbjct:    6 DKLTASPEFDGPVRERKCTDIIFMLAIIIMWITMTAVGISSIQQGDVRELLAPTDYEGNLCGFDDGYEDLGKLYYANNVGSGVCVGTCPSTTDLT 100          
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Match: A0A7S4J5U8_9STRA (Choline transporter-like protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5U8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 9.010e-26
Identity = 49/98 (50.00%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 EKMVAPPDFKRPVQDRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIAPVDYEGNICGHTSGYEDLDN---LYYISTSGYGVCVESCPTTTDLT 285
            EK+ APPDF  PVQ+R+CTD+L SLL++  W AMT LG   + NGD  +++ P+DY+GNICG   G  D+++   LYY+++   GVCV+ CP+  DLT
Sbjct:    9 EKLQAPPDFSGPVQNRRCTDVLCSLLLVLTWAAMTGLGFYAVSNGDYRVIVYPMDYDGNICGTNYGNIDMEDYPFLYYVNSYSAGVCVKECPSIEDLT 106          
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.460e-24
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    4 KMVAPPDFKRPVQDRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIAPVDYEGNICGHTSGYEDLDNLYYISTSGYGVCVESCPTTTD 279
            K+ AP D +    DR+CTD+LF L++I  W+AMT LG+DGI NG+P LL+  +DY+G ICG   G +D   LYYI   G GVCVE CPT T+
Sbjct:   17 KLAAPDDIEGGA-DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPTVTN 107          
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Match: A0A7S2XXR1_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXR1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.880e-24
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    4 KMVAPPDFKRPVQDRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIAPVDYEGNICGHTSGYEDLDNLYYISTSGYGVCVESCP 267
            K ++   F+ P   RKCTDILF +LII  W+ +TA+G D   +GDP+ LIA VDY G +CG++SG ED +N+YY+ +S  GVCV +CP
Sbjct:   18 KKLSGDGFQGPTDQRKCTDILFLILIILAWIILTAIGSDSCVHGDPWTLIAQVDYGGRVCGYSSGVEDSENIYYLDSSLNGVCVNTCP 105          
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.080e-24
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    7 MVAPPDFKRPVQDRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIAPVDYEGNICGHTSGYEDLDNLYYISTSGYGVCVESCPTTTD 279
            M   PD      DR+CTD+LF L++I  W+AMT LG+DGI NG+P LL+  +DY+G ICG   G +D   LYYI   G GVCVE CPT T+
Sbjct:    1 MPTAPDDIEGGADRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPTVTN 91          
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Match: A0A7S2HA85_9STRA (Choline transporter-like protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HA85_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.020e-22
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 EKMVAPPDFKRPVQDRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIAPVDYEGNICGHTSGYEDLDN---LYYISTSGYGVCVESCP 267
            EK+VAP DF  P +DR CTDI  S+L++CMW+AMT LG     NGD  +++ P+DY+GNICG   G  D+++   L Y++    GVCV+ CP
Sbjct:   18 EKLVAPADFDGPTKDRHCTDIFCSILLLCMWIAMTGLGAYAATNGDFRVILYPLDYDGNICGTDYGSIDMNDYPYLVYVNIFSGGVCVKECP 109          
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Match: A0A7S2UXN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXN4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.850e-22
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   43 DRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIAPVDYEGNICGHTSGYEDLDNLYYISTSGYGVCVESCPTTTDL 282
            DRKCTD+L  L+++C W  MT LG + +E G P  LI   DY+G  CG+ SG +D   LYYI +SG GVC++ CP  TDL
Sbjct:    1 DRKCTDVLMLLVLLCCWGVMTYLGWEALERGKPEFLIYQPDYKGRACGYDSGVKDKPLLYYIDSSGTGVCLDKCPEETDL 80          
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Match: A0A7S3Y2F1_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2F1_HETAK)

HSP 1 Score: 98.6 bits (244), Expect = 5.410e-22
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 EKMVAPPDFKRPVQDRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIAPVDYEGNICGHTSGYEDLDNLYYISTSGYGVCVESCPTTTD 279
            E + A  DF  PV++R+CTD+L+  L++ +W+ MT +G   ++NGD  L++ PVDY+G  CG    YED  +LYY+   G GVCVESCP TTD
Sbjct:   10 EPIQAGHDFDGPVKNRRCTDLLWLGLLLVVWICMTVIGKQAVDNGDIDLILHPVDYQGRSCG-VGDYEDKPDLYYVRFDGTGVCVESCPQTTD 101          
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Match: A0A7S2UHE9_9STRA (Choline transporter-like protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHE9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.330e-20
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 1
Query:    1 EKMVAPPDFKRPVQDRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIAPVDYEGNICGHTSGYEDLDN---LYYISTSGYGVCVESCP 267
            +K+ AP DF  P  DR CTDI+ S+LI+ MW+AM+ +G   + NGD   ++ P+DY+GNICG   G  D+     LYY+++   GVCV+ CP
Sbjct:   14 DKLEAPADFDGPTDDRHCTDIVCSILIVIMWIAMSGVGAYAVTNGDYRKILNPLDYDGNICGTDFGGVDMTEYPYLYYVNSYSGGVCVKECP 105          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14406.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G036_ECTSI1.060e-3256.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW76_9PHAE1.410e-3158.95Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7S4J5U8_9STRA9.010e-2650.00Choline transporter-like protein n=1 Tax=Odontella... [more]
D8LIJ7_ECTSI1.460e-2453.26Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7S2XXR1_9STRA4.880e-2451.14Choline transporter-like protein n=1 Tax=Fibrocaps... [more]
A0A6H5L007_9PHAE7.080e-2452.75Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7S2HA85_9STRA4.020e-2248.91Choline transporter-like protein n=1 Tax=Helicothe... [more]
A0A7S2UXN4_9STRA4.850e-2251.25Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3Y2F1_HETAK5.410e-2248.39Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S2UHE9_9STRA1.330e-2045.65Choline transporter-like protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14406contigP-wetherbeei_contig14406:2..1084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G036
Model size285
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons3
Evalue1.32e-32
EggNOG OGs2D6PU@1|root,2T2K5@2759|Eukaryota
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186020.8051426-UTR-P-wetherbeei_contig14406:1..71683186020.8051426-UTR-P-wetherbeei_contig14406:1..7Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14406 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186020.8160996-CDS-P-wetherbeei_contig14406:7..941683186020.8160996-CDS-P-wetherbeei_contig14406:7..94Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14406 8..94 +
1683186020.825709-CDS-P-wetherbeei_contig14406:277..3311683186020.825709-CDS-P-wetherbeei_contig14406:277..331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14406 278..331 +
1683186020.8355174-CDS-P-wetherbeei_contig14406:946..10841683186020.8355174-CDS-P-wetherbeei_contig14406:946..1084Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14406 947..1084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14406.1.1prot_P-wetherbeei_contig14406.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14406 8..1084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14406.1.1

>prot_P-wetherbeei_contig14406.1.1 ID=prot_P-wetherbeei_contig14406.1.1|Name=mRNA_P-wetherbeei_contig14406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MVAPPDFKRPVQDRKCTDILFSLLIICMWVAMTALGIDGIENGDPYLLIA
PVDYEGNICGHTSGYEDLDNLYYISTSGYGVCVESCPTTTDLT
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mRNA from alignment at P-wetherbeei_contig14406:2..1084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14406.1.1 ID=mRNA_P-wetherbeei_contig14406.1.1|Name=mRNA_P-wetherbeei_contig14406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1083bp|location=Sequence derived from alignment at P-wetherbeei_contig14406:2..1084+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGATGGTGGCGCCGCCCGACTTCAAACGGCCCGTCCAGGACCGCAA GTGCACGGACATCCTCTTTTCGCTGCTTATCATCTGTATGTGGGTGAGTG ACACAGAGATGGTGGCTACCGATCAACATGAGATGATTTGCACGCGATAA AAAGTGGTTTCCTCCCGCTTCTGCTGGAAAACTGGGACTTTATATAATAC CTGTCGTTACGACTGGCCTTGTGTGCCGGAGTAACCGCGGTCTCTCGGCG GCTCTGCATGTTCTGAACGCCAACAGGTGGCCATGACCGCACTCGGGATC GACGGCATCGAGAACGGCGATCCATACCTGGTGAGCGTCCTCTTGCGGCG GTAGAGGGGGGAAGGAGCTTGGCGGGAGCAATGCCTGCCACTGCCGCCAC TACAACTCTTGCGGCGTTAGAGGGGGAAGGAGTGTGCGGGAGCAATGCCT GCCACTGCCGCCACTACAAGTGCGCCGTGGCATCGACCGAGCCTGTCACG TTCGCATGTTCGATCTGAATGCTCTGATGGTGTTTATCGTGGCGCGGGCG CATTATAAGGGTGGTATGCATCTATACCGACTAATGGAAGGTGGTGGTAG TCCTACTGCCACCGCCACCGCCGGCGCTACCACCGCCGCCGCCGGCGCTA CCTGCTGCTATCGCCGTCCCCTTCGCCTCGGTCGCCGCCGGCCCGTTCGG TCGCCTGCCTGCCTGCCTGTTTGCAGTGAAAAGCACTCCGCGGTTTCTCT TGCCGATCATCGGCCCGCCTGTTGTCTGCTACTCCCTCTCCGTTCTGCCC GCTCTCCGCCGTCTCTTCTCCGCCCTCCGCCTTCCGTCTTACGCCCGCCG CCGTCTCTTCTCCGCTCTGCCGCCCTTCCTGTCCGCCCTACCGGCCACAC CGATCTCCACCCGCCCGCTCTCTGCCTCTGCCCGAATTTTTGCAGCTGAT TGCGCCGGTGGACTACGAGGGCAACATCTGCGGGCACACTTCGGGGTACG AGGATCTCGACAACCTCTACTACATATCCACCTCCGGCTACGGCGTGTGC GTCGAGTCGTGCCCCACCACGACCGATCTGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14406:2..1084+

>mRNA_P-wetherbeei_contig14406.1.1 ID=mRNA_P-wetherbeei_contig14406.1.1|Name=mRNA_P-wetherbeei_contig14406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig14406:2..1084+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGCCGCCCGACTTCAAACGGCCCGTCCAGGACCGCAAGTGCAC
GGACATCCTCTTTTCGCTGCTTATCATCTGTATGTGGGTGGCCATGACCG
CACTCGGGATCGACGGCATCGAGAACGGCGATCCATACCTGCTGATTGCG
CCGGTGGACTACGAGGGCAACATCTGCGGGCACACTTCGGGGTACGAGGA
TCTCGACAACCTCTACTACATATCCACCTCCGGCTACGGCGTGTGCGTCG
AGTCGTGCCCCACCACGACCGATCTGACG
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