mRNA_P-wetherbeei_contig14313.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14313.1.1
Unique NamemRNA_P-wetherbeei_contig14313.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Match: A0A7C2QPN7_9HYPH (DUF559 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QPN7_9HYPH)

HSP 1 Score: 147 bits (371), Expect = 1.590e-43
Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFYADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEVYDNIDGVCDTLLAFI 345
            MRG QPW+T+R+R LRS+   A  K+WS LRNRRL+GLKFVR+  +G ++ADF+CR+ KV+VE+DGG HST  EIA D  R   L A G+R+FR  N ++YDNIDGV DTLL FI
Sbjct:    1 MRGSQPWQTSRSRALRSKPISAEAKLWSRLRNRRLNGLKFVRQVPLGSYFADFLCREHKVVVEVDGGTHSTQAEIAADGRRARELRAMGYRVFRVRNIDIYDNIDGVLDTLLDFI 115          
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Match: UPI000930D207 (DUF559 domain-containing protein n=1 Tax=Hyphomicrobium sp. CS1BSMeth3 TaxID=1892844 RepID=UPI000930D207)

HSP 1 Score: 144 bits (363), Expect = 2.550e-42
Identity = 67/118 (56.78%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFYADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEVYDNIDGVCDTLLAFIRRK 354
            MRG +PWRTNRARVLR+  + A  ++W+ELR+RRL GLKFVR+  I   Y DF+CR++KVIVE+DGG HSTD EIA D AR   L   G+R+FR  N +VYD++D   D LLA+++ K
Sbjct:    1 MRGARPWRTNRARVLRADDTSAEARLWNELRDRRLGGLKFVRQAPIADHYVDFLCREQKVIVEVDGGTHSTDAEIANDAARADQLRQLGYRLFRVSNADVYDDLDSALDALLAYVKEK 118          
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Match: A0A6I0ELI1_HYPSQ (Endonuclease domain-containing protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0ELI1_HYPSQ)

HSP 1 Score: 139 bits (351), Expect = 1.600e-40
Identity = 66/117 (56.41%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFYADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEVYDNIDGVCDTLLAFIRR 351
            MRGPQPWRTNR+R LRSR   A  K+W ELR+RRL G KFVR+  IGP++ADF CR++K+IVE+DG  H  DEEIA D+AR A L   G+R+ R  N +V  N+DGV + LL  +++
Sbjct:    1 MRGPQPWRTNRSRALRSRQVTAEAKLWEELRSRRLGGFKFVRQAAIGPYFADFACREKKLIVEVDGATHGLDEEIAADQARTAALERMGYRVCRVTNDDVERNMDGVLEWLLHELQK 117          
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Match: UPI001FA9FF12 (endonuclease domain-containing protein n=1 Tax=Rhodoblastus acidophilus TaxID=1074 RepID=UPI001FA9FF12)

HSP 1 Score: 136 bits (342), Expect = 3.640e-39
Identity = 62/116 (53.45%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFYADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEVYDNIDGVCDTLLAFIR 348
            MRG    RT+R+R LR   + A  K+WS LR R+L G KFVR+  IGPF+ADFVCRD+K+++E+DG  HSTDEE  YD+ REA+L   G+R+ R  N +V+ N+DGVC+T+LA ++
Sbjct:    1 MRGAAALRTSRSRALRGEQTDAERKLWSALRGRQLGGFKFVRQEPIGPFFADFVCRDQKLVIEVDGATHSTDEERDYDRRREAFLREAGYRVVRVTNDDVFRNLDGVCETILAALQ 116          
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Match: A0A679JCP3_9HYPH (DUF559 domain-containing protein n=1 Tax=Hyphomicrobium sp. ghe19 TaxID=2682968 RepID=A0A679JCP3_9HYPH)

HSP 1 Score: 134 bits (336), Expect = 2.800e-38
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFYADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEVYDNIDGVCDTLLA 339
            MRG QPW+ NRARVLRS A+ A +K+W  LR+RRL G+KFVR+  I  +Y DF CRD + IVEIDGG H T  E+A+D  R   L+A G+++ R HN ++ +N+DGV D +LA
Sbjct:    1 MRGTQPWKANRARVLRSNATAAKDKLWFHLRDRRLGGVKFVRQFPIENYYVDFACRDARSIVEIDGGTHDTPSELAHDSKRTQTLMALGYKVVRVHNNDICENVDGVLDQILA 113          
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Match: UPI0019B5FA89 (Endonuclease domain-containing protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019B5FA89)

HSP 1 Score: 134 bits (336), Expect = 3.260e-38
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFYADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEVYDNIDGVCDTLLAFIRR 351
            MRGPQPWRTNR+R LRSR   A EK+W ELRNRRL G KFVR+  +G ++ DF CR+ K+IVE+DG  H  D EIA D  R + L   G+R+ R  N +V  NIDGV + LL  + R
Sbjct:    1 MRGPQPWRTNRSRALRSRQVSAEEKLWEELRNRRLSGFKFVRQLPVGSYFGDFACRERKLIVEVDGATHGRDVEIASDAVRTSSLEGMGYRVCRVTNDDVTRNIDGVLEWLLHELER 117          
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Match: A0A549SHI6_METSR (DUF559 domain-containing protein n=2 Tax=Methylosinus TaxID=425 RepID=A0A549SHI6_METSR)

HSP 1 Score: 128 bits (321), Expect = 6.610e-36
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFYADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEVYDNIDGVCDTLLAFIRRK 354
            MRG +   T R+R LR+  +PA E++W  LR RRL G KFVR+  IGP++ADF CRDE ++VE+DG  HSTD EIA D  R+ +L A GFR+ R  N EV+ N+DGV +T+L  + R+
Sbjct:    1 MRGLRLHETARSRELRAAQTPAEERLWGALRARRLAGYKFVRQLPIGPYFADFACRDEALVVEVDGATHSTDAEIARDAHRDRFLRAAGFRVLRVANDEVFHNLDGVKETILTALERR 118          
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Match: A0A3S0M6W3_9HYPH (Endonuclease domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3S0M6W3_9HYPH)

HSP 1 Score: 127 bits (319), Expect = 1.910e-35
Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFYADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEVYDNIDGVCDTLLAFIRRK 354
            MR  QPWRT R+RVLRS+   A   +W  LRNR+L G KFVR+  IGP++ADF CR+ ++IVE+DGG HS  +E A D  R   L   GFR+ R  N +VY NI+GV DT+LA + + 
Sbjct:    1 MRSAQPWRTTRSRVLRSKPISAEAALWRRLRNRQLGGFKFVRQFPIGPYFADFTCRELRLIVELDGGTHSEAQERASDAERSRVLNTAGFRVVRVRNADVYGNIEGVLDTILAELVKS 118          
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Match: A0A6B8MBD4_9HYPH (Endonuclease domain-containing protein n=1 Tax=Methylocystis parvus TaxID=134 RepID=A0A6B8MBD4_9HYPH)

HSP 1 Score: 125 bits (315), Expect = 5.560e-35
Identity = 59/115 (51.30%), Postives = 79/115 (68.70%), Query Frame = 1
Query:    1 MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFYADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEVYDNIDGVCDTLLAFI 345
            MRGP  +   R+R LR+  + A   +W +LR RRL G KFVR+  I  F+ADFVCR++K+++E+DG  HSTDEE+AYD  RE  L A GFRI R  N ++  NIDGVC+T+L  +
Sbjct:    1 MRGPDHFERTRSRDLRAAQTSAEANLWGKLRGRRLGGYKFVRQEPIEGFFADFVCREQKLVIEVDGATHSTDEEVAYDARRERILKAAGFRILRVQNDDIRTNIDGVCETILRTL 115          
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Match: A0A212QYQ9_RHOAC (Very-short-patch-repair endonuclease n=2 Tax=Rhodoblastus acidophilus TaxID=1074 RepID=A0A212QYQ9_RHOAC)

HSP 1 Score: 126 bits (317), Expect = 6.920e-35
Identity = 61/112 (54.46%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFYADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEVYDNIDGVCDTLL 336
            MRG  P RT+R+R+LR  A+ A  K+WS LR RRL+G KFVR+  IG +Y DFVCR+ K+IVE+DG  HST  E A+D  R+ +L+ QGFR+ R  N  V++NI GVC+T+L
Sbjct:    1 MRGATPTRTDRSRLLRRDATSAEAKLWSRLRARRLNGFKFVRQENIGVYYVDFVCREAKLIVEVDGATHSTPRERAHDHRRDMWLVEQGFRVLRVTNAYVFENIAGVCETIL 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14313.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2QPN7_9HYPH1.590e-4360.00DUF559 domain-containing protein n=1 Tax=Hyphomicr... [more]
UPI000930D2072.550e-4256.78DUF559 domain-containing protein n=1 Tax=Hyphomicr... [more]
A0A6I0ELI1_HYPSQ1.600e-4056.41Endonuclease domain-containing protein n=1 Tax=Hyp... [more]
UPI001FA9FF123.640e-3953.45endonuclease domain-containing protein n=1 Tax=Rho... [more]
A0A679JCP3_9HYPH2.800e-3853.98DUF559 domain-containing protein n=1 Tax=Hyphomicr... [more]
UPI0019B5FA893.260e-3854.70Endonuclease domain-containing protein n=1 Tax=Hyp... [more]
A0A549SHI6_METSR6.610e-3651.69DUF559 domain-containing protein n=2 Tax=Methylosi... [more]
A0A3S0M6W3_9HYPH1.910e-3551.69Endonuclease domain-containing protein n=1 Tax=Hyp... [more]
A0A6B8MBD4_9HYPH5.560e-3551.30Endonuclease domain-containing protein n=1 Tax=Met... [more]
A0A212QYQ9_RHOAC6.920e-3554.46Very-short-patch-repair endonuclease n=2 Tax=Rhodo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14313contigP-wetherbeei_contig14313:1284..1646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1134912.AJTV01000010_gene720
PFAMsDUF559
Model size363
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.12e-36
EggNOG OGsCOG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria,370MD@31993|Methylocystaceae
DescriptionProtein of unknown function (DUF559)
Cds size363
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186017.555553-CDS-P-wetherbeei_contig14313:1283..16461683186017.555553-CDS-P-wetherbeei_contig14313:1283..1646Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14313 1284..1646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14313.1.1prot_P-wetherbeei_contig14313.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14313 1284..1646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14313.1.1

>prot_P-wetherbeei_contig14313.1.1 ID=prot_P-wetherbeei_contig14313.1.1|Name=mRNA_P-wetherbeei_contig14313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MRGPQPWRTNRARVLRSRASPAYEKMWSELRNRRLDGLKFVRECVIGPFY
ADFVCRDEKVIVEIDGGAHSTDEEIAYDKAREAYLLAQGFRIFRAHNGEV
YDNIDGVCDTLLAFIRRKID*
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mRNA from alignment at P-wetherbeei_contig14313:1284..1646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14313.1.1 ID=mRNA_P-wetherbeei_contig14313.1.1|Name=mRNA_P-wetherbeei_contig14313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig14313:1284..1646+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGGCCCACAGCCTTGGCGGACAAATCGTGCTCGCGTGTTGCGTTC ACGCGCGTCGCCAGCCTACGAAAAGATGTGGTCGGAGCTTCGCAACCGGC GGCTCGACGGACTGAAGTTCGTCAGAGAATGCGTAATCGGTCCATTCTAT GCGGATTTCGTCTGCCGTGACGAGAAAGTCATCGTCGAAATCGACGGTGG CGCGCACAGTACCGACGAGGAGATTGCATACGACAAGGCGCGCGAAGCGT ATCTGCTTGCGCAGGGTTTTCGCATATTCCGGGCGCACAACGGCGAGGTC TACGACAACATCGACGGGGTATGCGACACGCTTCTGGCGTTCATCCGTAG GAAGATCGATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14313:1284..1646+

>mRNA_P-wetherbeei_contig14313.1.1 ID=mRNA_P-wetherbeei_contig14313.1.1|Name=mRNA_P-wetherbeei_contig14313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig14313:1284..1646+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGGCCCACAGCCTTGGCGGACAAATCGTGCTCGCGTGTTGCGTTC
ACGCGCGTCGCCAGCCTACGAAAAGATGTGGTCGGAGCTTCGCAACCGGC
GGCTCGACGGACTGAAGTTCGTCAGAGAATGCGTAATCGGTCCATTCTAT
GCGGATTTCGTCTGCCGTGACGAGAAAGTCATCGTCGAAATCGACGGTGG
CGCGCACAGTACCGACGAGGAGATTGCATACGACAAGGCGCGCGAAGCGT
ATCTGCTTGCGCAGGGTTTTCGCATATTCCGGGCGCACAACGGCGAGGTC
TACGACAACATCGACGGGGTATGCGACACGCTTCTGGCGTTCATCCGTAG
GAAGATCGATTGA
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