mRNA_P-wetherbeei_contig14248.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14248.1.1
Unique NamemRNA_P-wetherbeei_contig14248.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14248.1.1 vs. uniprot
Match: A0A7X8XPJ9_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XPJ9_9BURK)

HSP 1 Score: 216 bits (549), Expect = 7.100e-59
Identity = 170/547 (31.08%), Postives = 275/547 (50.27%), Query Frame = 1
Query:    1 LFRQIQLEQRAQVEALQGLGQSPTKSMLT---RHITSLRSASERLLELFPLLQKEESKEQMYSPFPVIDHTIRVGINLLDGKVSDSDFQTRLPSVGALISSLRQDVERFRLLYGKAELVAQTGPILERLEAGLGAAYTYVGNQDKIALQDSLRLLGSAGVQLMEVLQKFDEAGKNEVRFHQLR-FLEEFARAAQLENPPEWMVGRIWMGLDQALEYYKREMTTILRHPVFFEIETAFQPVDATLKRTLALYAAANKGKIAKDSLILLAPAVEQLDAEFKALQQQ--HQA-----AAFRYREAPNLDAVRELIGRTLNGEVGAAQFVRQLAEVQEAHQEMLKGL--EAGGSDPLTDELLH--LSRSHALAYARMNLYAEDGDPDHLRQGWLLISVSLPRIMELSKQLRERI-GVKPTSTVAFGVTCFRCGSENPKGQKFCKKCNAMLPQTSQEATEYTDIIGGAPSVAAPPSGTPANVAKLAQLVQQIEGGQIGISKFQSEMDEQLRNADKVHQGFDRQVANMTGRNPSFDAYAQFFATQMESYIQGL 1593
            L R  +LE  AQ  ALQ L  +  +S      R +  LR A++RL E    L+ EE +  ++SP P +DH +++G N+LDG V+    Q   P V + ++  R  VERF L + ++EL A   PIL+ LEAG+GAA  ++    +  L+D LRL+  A ++L  +LQ+  EA  N+ R +     +EE ARA ++  P E ++ R+W  L   LE     + T+  HP+   +     P  A +     L+ AA +      S  L    +E LD    +L+++   QA     A    + AP L   + L+GR + G++   +    +   Q   Q +   L   AG  DP  +E L   L+R   +    + L+ +    ++L + W +++ + PR++ LS+ LR R+  V P  T      C RCG+ N    ++C  C+A+LP ++Q  TE+++I G       P    PA+V +L  LV+++E  Q   ++ Q E+++ L  A++V   F  QV      +P+   YA+FF  QME Y+ GL
Sbjct:   62 LLRSARLEAEAQWRALQALESALAESRKVGAQRALEDLRLATDRLQEALRSLRSEEQEADLFSPDPELDHFLKIGRNVLDGHVAAQALQADFPGVASRVTRKRAAVERFALFHTESELGAAAEPILQNLEAGMGAAAEFLQGGRRETLEDCLRLVAPASIELQPLLQEM-EAWANQHRCYAAHPLVEELARAREVVLPEE-LLERLWEDLTVLLEDEAARIQTLRLHPL--RVLAGLDPEPAAV-----LHLAAQQALSQSRSTGLTDAPLEALDEALTSLRKELAQQAELLGQATAPVQGAPFLVEFQALLGRAMQGQLPREELHSAVEHFQALQQGLADELAQSAGLVDPEEEEALQELLTRQGEVG-TLLELWCQGAQEENLVEAWAILAETTPRLVALSESLRRRLQNVNPAPTDPI---CLRCGTANSPSSRYCGACSAVLPISAQGPTEFSEITGADE----PAPAAPAHVVRLEDLVRRVEEEQARPAEVQEEVEDLLARAEQVAANFHGQVRPRLLADPTLVEYARFFEEQMEVYMGGL 591          
BLAST of mRNA_P-wetherbeei_contig14248.1.1 vs. uniprot
Match: A0A7X8XNJ9_9BURK (Zinc ribbon domain-containing protein (Fragment) n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XNJ9_9BURK)

HSP 1 Score: 211 bits (537), Expect = 3.160e-57
Identity = 147/449 (32.74%), Postives = 226/449 (50.33%), Query Frame = 1
Query:  103 LRSASERLLELFPLLQKEESKEQMYSPFPVIDHTIRVGINLLDGKVSDSDFQTRLPSVGALISSLRQDVERFRLLYGKAELVAQTGPILERLEAGLGAAYTYVGNQDKIALQDSLRLLGSAGVQLMEVLQKFDEAGKNEVRFHQLRFLEEFARA--AQLENPPEWMVGR-IWMGLDQALEYYKREMTTILRHPVFFEIETAFQPVDATLKRT---LALYAAANKGKIAKDSLILLAPAVEQLDAEFKALQQQHQAAAFRYREAPNLDAVRELIGRTLNGEVGAAQFVRQLAEVQEAHQEMLKGLEAGGSDP-LTDELLHLSRSHALAYARMNLYAEDGDPDHLRQGWLLISVSLPRIMELSKQLRERIGVKPTSTVAFGVTCFRCGSENPKGQKFCKKCNAMLPQTSQEATEYTDIIGGAPSVAAPPSGTPANVAKLAQLVQQIEGGQI 1428
            LR A+ RL   + LL +EE KE++YSPFP ++H ++VG+N+L+G V  ++   R P V AL+  L +D +RF  LYG  E+      +LE ++AGLGA   Y  +  + AL D L+LLG       E+L + D       R     +L+E  RA     E    WM+ R  W     A  +Y++E+    R P++  ++    P  A L +    L L   A   +   D L  L PA ++L ++   L  + +    RY EAP    +RE +GR L+GE       +Q +   E  QE+L  L  GG +  L  EL  L      A+  +    E  D   LR+GW L+  ++PR++E+++ +R+ +  K       G+ C RCG  NP G ++C  C+A+LP+  Q  TEYTDI+GG  S       T   ++ + +L+   E GQ+
Sbjct:   99 LREAASRLARGYGLLHEEEKKEKIYSPFPAVEHFLKVGLNVLEGHVGRAELTERFPPVVALVGRLERDHQRFEALYGAEEVALPMVGLLEAMQAGLGAIAEYFESGSRSALADGLKLLGRGSAAAHELLPEMDRVAAATRRSGHA-YLDELRRALDCHAEGRLPWMLVRDAWXXXXXAESHYRQELDAFRRFPLYPFMKDDELPARAALDQVQVELELLEPAFDRESTPD-LAGLEPAFDELASQVAHLWDRIEEELGRYSEAPAFQELRERVGRALSGEPVDLLLRQQFSSFHETQQELLNQLAQGGLEGGLGSELGALLAVQDQAWQVLLSSLEGPDLAVLRRGWELLEATMPRMVEIARGMRQVLQ-KSRPAAPTGMACMRCGHANPPGVRYCGACSAVLPEVFQAPTEYTDILGGGASE------TGTRLSNMERLLTAYEVGQV 538          
BLAST of mRNA_P-wetherbeei_contig14248.1.1 vs. uniprot
Match: A0A355TQP5_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TQP5_9BACT)

HSP 1 Score: 170 bits (431), Expect = 2.430e-42
Identity = 144/548 (26.28%), Postives = 246/548 (44.89%), Query Frame = 1
Query:    1 LFRQIQLEQRAQVEALQGLGQSPTKS---MLTRHITSLRSASERLLELFPLLQKEESKEQMYSPFPVIDHTIRVGINLLDGKVSDSDFQTRLPSVGALISSLRQDVERFRLLYGKAELVAQTGPILERLEAGLGAAYTYVGNQDKIALQDSLRLLGSAGVQLMEVLQKFDEAGKNEVRFHQLRFLEEFARAAQLENPPEWMVGRIWMGLDQALEYYKREMTTILRHPVFFEIETAFQPVDATLKRTLALYAAANKGKIAKDSLILLAPAVEQLDAEFKALQQQHQAAAFRYREAPNLDAVRELIGRTLNGEVGAAQFVRQLAEVQEAHQEMLKGLEAGGSDPLTDE----LLHLSRSHALAYARMNLYAEDGDPDHLRQGWLLISVSLPRIMELSKQLRERIGVKPTSTVAFGVTCFRCGSENPKGQKFCKKCNAMLPQTSQEAT-EYTDIIGGAPSVAAPPSGTPANVAKLAQLVQQIEGGQIGISKFQSEMDEQLRNADKVHQGFDRQVANMTGRNPSFDAYAQFFATQMESYIQGLYLMHSYAEN 1620
            L  ++Q E  A  +ALQ L  S + +    + +    L+ ++E +  L+  L  E  ++ + SP+PV DH ++VG N+L G V  S               LR  V+RF L YG++ L      ++  +EAG+GA   ++ +    AL D+L LL +  V +  V+    +    E ++ +   +EE  RA + +   E +   +W  +  AL+    ++ T+L HP+    +   Q + A + R + +     K  + +  L      +  LD                   APN + +   +G  ++G++    F   L +  E  +E    L+ G  + L+ E    L H     AL    +  + E GD   L+ GW  IS SLP    +  Q+++ +G+   S+    +TC RCG +NP   ++C KC+A+L Q  Q    EYTD+  G  S +      P N+ KL QLV+ +E GQ    +    +D+ L +A    + +  +V     R     + A+ F   M SYI GL +  ++ E+
Sbjct:   62 LVNKLQAELEAHEKALQDLENSLSDAEPFAIEKAGRDLKYSAEAVATLWDELNAEVGEQMVMSPYPVYDHLLKVGQNILQGHVDPSVLTAFFTPAADFTIRLRAAVKRFVLFYGESSLSECAQKVITNVEAGMGALDKFLQSGQTKALDDALHLLVTTTVTMYTVMSDMGQWAAAEKKYARHPLVEELYRAREAKLQGEDL-SYLWQAIKHALKLELTQVQTLLNHPLASLCDVHSQALKAGMARVMYIVQEGEKKSLDELDLPEFDIMLLNLDRLIHNDLTHINIECRLVSGAPNFEELLVTVGLAMDGKIEPEAFKIILQDTLERIEETQNNLD-GALEQLSAEDLELLAHCLDCQALGCRELASWCETGDKQLLKNGWRRISASLPSTKRICAQMKKSLGLNDNSSKK--LTCMRCGQQNPASARYCSKCSAVLMQLVQAPPMEYTDLETGL-SDSNFEHPLPGNILKLEQLVRSVESGQAYTQEAAEVLDKLLSSAYAYRKLYINRVRPALEREQIDPSIAERFEIGMSSYIDGLEICRNFVED 604          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14248.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7X8XPJ9_9BURK7.100e-5931.08Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A7X8XNJ9_9BURK3.160e-5732.74Zinc ribbon domain-containing protein (Fragment) n... [more]
A0A355TQP5_9BACT2.430e-4226.28Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14248contigP-wetherbeei_contig14248:91..1710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1620
Hectar predicted targeting categoryother localisation
Exons1
Cds size1620
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186014.7616355-CDS-P-wetherbeei_contig14248:90..17101683186014.7616355-CDS-P-wetherbeei_contig14248:90..1710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14248 91..1710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14248.1.1prot_P-wetherbeei_contig14248.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14248 91..1710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14248.1.1

>prot_P-wetherbeei_contig14248.1.1 ID=prot_P-wetherbeei_contig14248.1.1|Name=mRNA_P-wetherbeei_contig14248.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=540bp
LFRQIQLEQRAQVEALQGLGQSPTKSMLTRHITSLRSASERLLELFPLLQ
KEESKEQMYSPFPVIDHTIRVGINLLDGKVSDSDFQTRLPSVGALISSLR
QDVERFRLLYGKAELVAQTGPILERLEAGLGAAYTYVGNQDKIALQDSLR
LLGSAGVQLMEVLQKFDEAGKNEVRFHQLRFLEEFARAAQLENPPEWMVG
RIWMGLDQALEYYKREMTTILRHPVFFEIETAFQPVDATLKRTLALYAAA
NKGKIAKDSLILLAPAVEQLDAEFKALQQQHQAAAFRYREAPNLDAVREL
IGRTLNGEVGAAQFVRQLAEVQEAHQEMLKGLEAGGSDPLTDELLHLSRS
HALAYARMNLYAEDGDPDHLRQGWLLISVSLPRIMELSKQLRERIGVKPT
STVAFGVTCFRCGSENPKGQKFCKKCNAMLPQTSQEATEYTDIIGGAPSV
AAPPSGTPANVAKLAQLVQQIEGGQIGISKFQSEMDEQLRNADKVHQGFD
RQVANMTGRNPSFDAYAQFFATQMESYIQGLYLMHSYAEN
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mRNA from alignment at P-wetherbeei_contig14248:91..1710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14248.1.1 ID=mRNA_P-wetherbeei_contig14248.1.1|Name=mRNA_P-wetherbeei_contig14248.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1620bp|location=Sequence derived from alignment at P-wetherbeei_contig14248:91..1710+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTTTCGCCAGATCCAGCTCGAGCAGCGCGCTCAGGTCGAGGCGCTTCA GGGTCTGGGGCAGTCTCCCACCAAAAGTATGCTCACAAGGCATATCACTT CGCTTCGCTCTGCCTCCGAGCGGCTTCTCGAGCTCTTCCCTCTGCTTCAA AAGGAAGAGTCCAAAGAGCAGATGTATTCACCCTTCCCCGTCATCGATCA CACGATTCGCGTAGGTATCAACCTGCTCGACGGCAAGGTCAGCGACAGCG ACTTTCAGACCCGTTTGCCCTCCGTAGGGGCCCTTATTTCCAGCCTGCGT CAGGACGTAGAGCGGTTTCGCCTGCTCTACGGTAAAGCAGAGCTGGTGGC CCAAACCGGTCCCATTTTGGAGCGTCTGGAGGCGGGTCTGGGAGCGGCTT ACACCTACGTCGGAAATCAAGACAAGATCGCGCTGCAAGATAGCCTCAGG CTGTTAGGCTCGGCGGGCGTGCAGTTGATGGAAGTGCTGCAGAAGTTTGA CGAGGCCGGTAAAAACGAGGTCCGTTTCCACCAGCTTCGCTTTCTGGAAG AATTTGCCCGTGCTGCCCAGCTAGAGAACCCTCCCGAATGGATGGTGGGG CGCATCTGGATGGGGCTTGACCAGGCGCTCGAATACTACAAGCGCGAGAT GACTACGATTTTACGCCATCCCGTGTTCTTCGAGATCGAGACGGCGTTCC AACCCGTCGACGCCACTCTCAAGCGCACGTTGGCTCTCTATGCTGCCGCC AACAAGGGCAAAATCGCCAAAGACAGCCTGATCCTTCTCGCACCCGCCGT GGAGCAGCTCGACGCCGAGTTCAAAGCGCTCCAACAGCAGCATCAGGCCG CCGCCTTCCGCTACCGAGAGGCCCCCAATCTCGATGCCGTGCGCGAGCTC ATCGGGCGCACGCTCAACGGTGAAGTTGGAGCTGCCCAATTCGTGCGCCA GCTTGCCGAAGTCCAGGAAGCTCACCAGGAGATGCTCAAGGGGTTGGAAG CGGGGGGCTCAGATCCGCTGACCGACGAGCTTTTGCATCTCAGCCGATCG CACGCTCTGGCCTACGCCCGCATGAACCTTTACGCCGAAGATGGCGACCC CGACCATCTGCGCCAGGGCTGGCTTTTGATCTCGGTTTCGCTCCCGCGCA TTATGGAGCTGTCCAAGCAGTTGCGCGAACGGATTGGCGTCAAGCCGACC AGCACCGTGGCTTTCGGAGTCACGTGTTTTCGCTGCGGTAGCGAGAATCC CAAGGGTCAGAAGTTTTGCAAGAAGTGCAACGCGATGCTGCCTCAGACCT CGCAGGAAGCCACGGAATACACCGACATCATCGGCGGCGCCCCTTCGGTG GCCGCGCCACCCAGCGGCACGCCCGCCAACGTAGCCAAACTGGCCCAACT GGTGCAGCAAATCGAGGGAGGCCAGATCGGCATTTCCAAGTTCCAGTCCG AAATGGACGAGCAGCTGCGCAATGCCGACAAGGTCCATCAGGGCTTCGAC CGGCAGGTTGCCAACATGACGGGCCGCAACCCGTCGTTTGATGCCTACGC GCAGTTTTTCGCGACCCAGATGGAGTCCTATATCCAGGGTCTCTACTTGA TGCACAGCTACGCCGAGAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14248:91..1710+

>mRNA_P-wetherbeei_contig14248.1.1 ID=mRNA_P-wetherbeei_contig14248.1.1|Name=mRNA_P-wetherbeei_contig14248.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1620bp|location=Sequence derived from alignment at P-wetherbeei_contig14248:91..1710+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTTTCGCCAGATCCAGCTCGAGCAGCGCGCTCAGGTCGAGGCGCTTCA
GGGTCTGGGGCAGTCTCCCACCAAAAGTATGCTCACAAGGCATATCACTT
CGCTTCGCTCTGCCTCCGAGCGGCTTCTCGAGCTCTTCCCTCTGCTTCAA
AAGGAAGAGTCCAAAGAGCAGATGTATTCACCCTTCCCCGTCATCGATCA
CACGATTCGCGTAGGTATCAACCTGCTCGACGGCAAGGTCAGCGACAGCG
ACTTTCAGACCCGTTTGCCCTCCGTAGGGGCCCTTATTTCCAGCCTGCGT
CAGGACGTAGAGCGGTTTCGCCTGCTCTACGGTAAAGCAGAGCTGGTGGC
CCAAACCGGTCCCATTTTGGAGCGTCTGGAGGCGGGTCTGGGAGCGGCTT
ACACCTACGTCGGAAATCAAGACAAGATCGCGCTGCAAGATAGCCTCAGG
CTGTTAGGCTCGGCGGGCGTGCAGTTGATGGAAGTGCTGCAGAAGTTTGA
CGAGGCCGGTAAAAACGAGGTCCGTTTCCACCAGCTTCGCTTTCTGGAAG
AATTTGCCCGTGCTGCCCAGCTAGAGAACCCTCCCGAATGGATGGTGGGG
CGCATCTGGATGGGGCTTGACCAGGCGCTCGAATACTACAAGCGCGAGAT
GACTACGATTTTACGCCATCCCGTGTTCTTCGAGATCGAGACGGCGTTCC
AACCCGTCGACGCCACTCTCAAGCGCACGTTGGCTCTCTATGCTGCCGCC
AACAAGGGCAAAATCGCCAAAGACAGCCTGATCCTTCTCGCACCCGCCGT
GGAGCAGCTCGACGCCGAGTTCAAAGCGCTCCAACAGCAGCATCAGGCCG
CCGCCTTCCGCTACCGAGAGGCCCCCAATCTCGATGCCGTGCGCGAGCTC
ATCGGGCGCACGCTCAACGGTGAAGTTGGAGCTGCCCAATTCGTGCGCCA
GCTTGCCGAAGTCCAGGAAGCTCACCAGGAGATGCTCAAGGGGTTGGAAG
CGGGGGGCTCAGATCCGCTGACCGACGAGCTTTTGCATCTCAGCCGATCG
CACGCTCTGGCCTACGCCCGCATGAACCTTTACGCCGAAGATGGCGACCC
CGACCATCTGCGCCAGGGCTGGCTTTTGATCTCGGTTTCGCTCCCGCGCA
TTATGGAGCTGTCCAAGCAGTTGCGCGAACGGATTGGCGTCAAGCCGACC
AGCACCGTGGCTTTCGGAGTCACGTGTTTTCGCTGCGGTAGCGAGAATCC
CAAGGGTCAGAAGTTTTGCAAGAAGTGCAACGCGATGCTGCCTCAGACCT
CGCAGGAAGCCACGGAATACACCGACATCATCGGCGGCGCCCCTTCGGTG
GCCGCGCCACCCAGCGGCACGCCCGCCAACGTAGCCAAACTGGCCCAACT
GGTGCAGCAAATCGAGGGAGGCCAGATCGGCATTTCCAAGTTCCAGTCCG
AAATGGACGAGCAGCTGCGCAATGCCGACAAGGTCCATCAGGGCTTCGAC
CGGCAGGTTGCCAACATGACGGGCCGCAACCCGTCGTTTGATGCCTACGC
GCAGTTTTTCGCGACCCAGATGGAGTCCTATATCCAGGGTCTCTACTTGA
TGCACAGCTACGCCGAGAAT
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