mRNA_P-wetherbeei_contig10292.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10292.1.1
Unique NamemRNA_P-wetherbeei_contig10292.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig10292.1.1 vs. uniprot
Match: A0A836CHX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.910e-21
Identity = 72/216 (33.33%), Postives = 96/216 (44.44%), Query Frame = 1 
Query:  199 PTLKILPNIDYGGGRAELLSGRRLPGPDGF---VDRDFESYPYALAPSMDN--GLEIAAMAGAEFSDWLRRTVDRNVNGIRYTFDRQQWKNGFQKWWARLLEADEHARMDFARLYPRMEGMNRAGIGGGGVAGXGAGIGHHARPVEEDWGHIYLECVEIADEARAAAGGSKPRLAPVTVEADDHGGDSEMIDCAMRGKWRLRYDEDDGAEIDFSPR 831
            P L+I+ N          LS R   GP G     +R+F +Y  A      N     +AAMA AEF DW+ RT+ RN+ G  + FD +QW+    KWW R LEADE AR++FAR Y R        +GGGG  G                             A A       RLA V V  +      E+ DCA+ G+W++ Y +D    +D+ PR
Sbjct:   66 PPLRIMAN----------LSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQYLR--------LGGGGXXGRXXXXXXRRXXXXXXXXXXXXXXXXXXXXAGA-------RLAAVPVYTE------EIEDCAVNGRWQVTYGDDGAQVVDYVPR 250
[Close]
BLAST of mRNA_P-wetherbeei_contig10292.1.1 vs. uniprot
Match: D7G502_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G502_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.690e-17
Identity = 68/199 (34.17%), Postives = 94/199 (47.24%), Query Frame = 1 
Query:   70 PVVRWEQSHNPRSGRCWSVAGVARMQEGGDRFERRGDSGPSFPPTLKILPNIDYGGGRAELLSGRRLPGPDGFVDRDFESYPYALAPSMDNGLEIAAMAGAEFSDWLRRTVDRNVNGIRYTFDRQQWKNGFQKWWARLLEADEHARMDFARLYPRMEGMNRAGIGGGGVAGXGAGIGHHARPVEEDWGHIYLECVEIAD 666
            P +       P +G     A       GG     +  SG +  P L+I PN        +    RR   P   VD+D     +    S D    IAAMA  EFSD+LRRTV+RN+NG ++ FD +QW +  +KWW+R +E D  A+ D  RLY    G   A        G  A +   AR VE++W  IY++C ++AD
Sbjct:   41 PRLALTPPRKPNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAP-LRITPNF-------QPQEKRR---PKFNVDKDVTYGAFLTEESFD----IAAMAWEEFSDFLRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDA-------RGNQA-LKVDAR-VEDEWDSIYVDCQDVAD 215
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10292.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CHX3_9STRA4.910e-2133.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G502_ECTSI2.690e-1734.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10292contigP-wetherbeei_contig10292:55..2226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1470
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002390.1
Cds size696
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10292.1.1prot_P-wetherbeei_contig10292.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10292 196..1593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185862.181423-UTR-P-wetherbeei_contig10292:54..1951683185862.181423-UTR-P-wetherbeei_contig10292:54..195Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10292 55..195 +
1683185862.2286863-UTR-P-wetherbeei_contig10292:1593..22261683185862.2286863-UTR-P-wetherbeei_contig10292:1593..2226Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10292 1594..2226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185862.1950707-CDS-P-wetherbeei_contig10292:195..4121683185862.1950707-CDS-P-wetherbeei_contig10292:195..412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10292 196..412 +
1683185862.2036285-CDS-P-wetherbeei_contig10292:584..6731683185862.2036285-CDS-P-wetherbeei_contig10292:584..673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10292 585..673 +
1683185862.2116659-CDS-P-wetherbeei_contig10292:952..12011683185862.2116659-CDS-P-wetherbeei_contig10292:952..1201Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10292 953..1201 +
1683185862.2197402-CDS-P-wetherbeei_contig10292:1452..15931683185862.2197402-CDS-P-wetherbeei_contig10292:1452..1593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10292 1453..1593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10292.1.1

>prot_P-wetherbeei_contig10292.1.1 ID=prot_P-wetherbeei_contig10292.1.1|Name=mRNA_P-wetherbeei_contig10292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=232bp
MQEGGDRFERRGDSGPSFPPTLKILPNIDYGGGRAELLSGRRLPGPDGFV
DRDFESYPYALAPSMDNGLEIAAMAGAEFSDWLRRTVDRNVNGIRYTFDR
QQWKNGFQKWWARLLEADEHARMDFARLYPRMEGMNRAGIGGGGVAGGGA
GIGHHARPVEEDWGHIYLECVEIADEARAAAGGSKPRLAPVTVEADDHGG
DSEMIDCAMRGKWRLRYDEDDGAEIDFSPRQ*
back to top

mRNA from alignment at P-wetherbeei_contig10292:55..2226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10292.1.1 ID=mRNA_P-wetherbeei_contig10292.1.1|Name=mRNA_P-wetherbeei_contig10292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2172bp|location=Sequence derived from alignment at P-wetherbeei_contig10292:55..2226+ (Phaeothamnion wetherbeei SAG_119_79)
TGTTTGGCGTACTCCGCGGCGCCAAGACAACTAGCGTGGCAGCCTTCCGC
CTCGTGCTCGTTTGCTGCGCCCGTCGTCAGATGGGAACAGAGTCACAACC
CGCGATCTGGCCGCTGTTGGTCTGTAGCAGGAGTGGCACGGATGCAAGAA
GGCGGGGATCGGTTCGAGAGAAGAGGAGACAGCGGCCCGTCCTTCCCCCC
GACCCTCAAGATCTTGCCCAACATCGATTACGGCGGAGGAAGGGCGGAAC
TGTTAAGCGGAAGGCGCCTTCCTGGGCCCGACGGCTTTGTCGATCGGGAT
TTTGAGAGCTACCCGTATGCGCTCGCTCCGTCCATGGATAATGGACTGGA
GATTGCAGGTGTGTGAATAGAGTTGTCCGCCTGAGCTGCAGCACATCAAA
GTCATTTTTCCAAAGCATGTGCGCGTCGACACCGTTTTTTTCGCTGTCAG
TTGTTCTACTTTGTGTTTTAGGCCCCTTCCTTCCCTTTACGCCTCCGTTT
ACGCGGCCTGCGGTGCGTACTTACGAGCAGCGATGGCAGGAGCTGAGTTC
TCGGACTGGCTGCGACGGACGGTGGACCGAAACGTCAACGGCATCCGATA
CACTTTCGACAGGCAACAAGTGAGTGCTCTTGGTATCGTTCATGCATGTT
TCCTCGGGGTGTATGCGGAAAGGATCGAACTTTCTGCCAAAGAGGGAGGG
ATCTTGCAGGAGAATGCCGTTCCGGGAGTGCCTAGAAAGAATGAATGTCG
TGCTCTGCCAGATTTCCAAGTGTTATTCCCACCATGGTGATGTTATACAA
TGGTTGCACCAAACCTGCTCCCATTCTGGCCGCTGCACCGCCGCTCGCCC
CGTCACCTTGCTCTGCTGATGAAACGCACATCATTTGCTACGCCGCAGTG
GAAGAACGGCTTCCAGAAATGGTGGGCGCGGCTGCTGGAGGCGGACGAGC
ATGCGCGGATGGACTTCGCGCGCCTCTACCCCCGCATGGAAGGCATGAAT
CGCGCGGGCATCGGCGGCGGTGGCGTCGCAGGCGGCGGCGCCGGCATCGG
CCACCATGCGCGGCCAGTAGAGGAGGACTGGGGACACATCTACCTGGAGT
GCGTGGAGATTGCCGACGAGGCGAGGGCTGCAGCGGGCGGATCAAAGGTG
TGTGGAATTTCGCCTACTCGGCTGAATGCTTCCTTTTAGTGTGTGGGCAA
ACGACCACAGCGACCTGACTTGTGGAGTGCAAAGGAAAAACACGTGGAAG
TAGAGCGTTTGCTTCAGGAGGCATTCGTTTGCAGTTGGATTGCGTATGTC
GTCGGATTCTCGGCGTTGTTGTTCCCCCAGCCGTCCACCTGGCCTTAAAA
CCGCACGCCAAACAAATTGAATCTGCTGCGATGGGCGATGCTCCGCAGCC
GCGGCTGGCGCCGGTTACGGTAGAGGCAGACGACCACGGCGGCGACAGCG
AGATGATTGACTGCGCGATGCGCGGCAAATGGCGCCTCCGCTACGATGAA
GACGATGGCGCAGAGATTGACTTCTCCCCACGCCAGTGAAACGAATGAAC
ATTTGATGCGAAACCGACTTGCGATTGGCACCTGGCCGCAGCGGGCGGAC
CTGTAGCAGGGGAGGAAAGGGGGAAGGGAAGAAGCGGAGCTCGGGCCGAG
GGCCAAGGGCGGCGCCGGGATTGGGAGAGTAGAGGAGCGGCAGTATGTGG
CCGCTGCAGGGTATCTGGCGGCGGCCGCTGCAGGGTATCTGGTGGTGGCA
GCGGCGACAGCGGCAGCGGCGGCGGCCGCCGACTAGTCATTCGACAGTTG
CTGCCGTCATGTTGCCGCTGAGGCAGTTGCGGCGCGGATATCTTGGTCGC
CTAAACATGCCAGCTTGTAGTACCACATGTGAGGTCCTTGCGGCGGCGGT
GGTAGCGGCCGCGACGGCGGTGGTAGCGGCCGCGGCGGCGGTGGTAGCGG
CCGCGGCGGCGGCGACAACAGCGGCGGGAGCTGTGGCTGAGACGGCGGCG
GCAGCGTTTGCGAGCGGCGATAAGGGTTCGGCAAACTGCAGCAGTGGCTG
TGACGGCGGTAGCGCCATGTGTGGAGAGGCTGCCGCCGCGGCGGTGGCGA
TGATGGCATCGCCGGAATCATTGTCCATTCGGTTAGCAAGATTGCCCTCC
CATGTTTATTGCGAGGCGACGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10292:55..2226+

>mRNA_P-wetherbeei_contig10292.1.1 ID=mRNA_P-wetherbeei_contig10292.1.1|Name=mRNA_P-wetherbeei_contig10292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig10292:55..2226+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGAAGGCGGGGATCGGTTCGAGAGAAGAGGAGACAGCGGCCCGTC
CTTCCCCCCGACCCTCAAGATCTTGCCCAACATCGATTACGGCGGAGGAA
GGGCGGAACTGTTAAGCGGAAGGCGCCTTCCTGGGCCCGACGGCTTTGTC
GATCGGGATTTTGAGAGCTACCCGTATGCGCTCGCTCCGTCCATGGATAA
TGGACTGGAGATTGCAGCGATGGCAGGAGCTGAGTTCTCGGACTGGCTGC
GACGGACGGTGGACCGAAACGTCAACGGCATCCGATACACTTTCGACAGG
CAACAATGGAAGAACGGCTTCCAGAAATGGTGGGCGCGGCTGCTGGAGGC
GGACGAGCATGCGCGGATGGACTTCGCGCGCCTCTACCCCCGCATGGAAG
GCATGAATCGCGCGGGCATCGGCGGCGGTGGCGTCGCAGGCGGCGGCGCC
GGCATCGGCCACCATGCGCGGCCAGTAGAGGAGGACTGGGGACACATCTA
CCTGGAGTGCGTGGAGATTGCCGACGAGGCGAGGGCTGCAGCGGGCGGAT
CAAAGCCGCGGCTGGCGCCGGTTACGGTAGAGGCAGACGACCACGGCGGC
GACAGCGAGATGATTGACTGCGCGATGCGCGGCAAATGGCGCCTCCGCTA
CGATGAAGACGATGGCGCAGAGATTGACTTCTCCCCACGCCAGTGA
back to top