prot_P-wetherbeei_contig13501.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig13501.1.1
Unique Name	prot_P-wetherbeei_contig13501.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	77

Homology

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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A1Q6ZS94_9BACT (DNA-directed RNA polymerase subunit omega n=2 Tax=Bacteria TaxID=2 RepID=A0A1Q6ZS94_9BACT)

HSP 1 Score: 124 bits (310), Expect = 1.360e-35
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 0

Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASP 70
            MARITVDDCLKRIPNRFQLTLAATYRARQ+  GAS LVEPN+DK TVIALREIATGKVG EVLKKNPA P
Sbjct:    1 MARITVDDCLKRIPNRFQLTLAATYRARQLGAGASPLVEPNRDKSTVIALREIATGKVGTEVLKKNPAPP 70

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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A537BUW0_9PROT (DNA-directed RNA polymerase subunit omega n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A537BUW0_9PROT)

HSP 1 Score: 122 bits (306), Expect = 5.550e-35
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0

Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASP 70
            MARITVDDCLKRIPNRFQLTLAATYRARQ+  GAS LVEPN+DK TVIALREIATGKVG EVLKKNP  P
Sbjct:    1 MARITVDDCLKRIPNRFQLTLAATYRARQLGAGASPLVEPNRDKSTVIALREIATGKVGTEVLKKNPTPP 70

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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A1F4EYR1_9PROT (DNA-directed RNA polymerase subunit omega n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EYR1_9PROT)

HSP 1 Score: 119 bits (298), Expect = 9.490e-34
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0

Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASPMP 72
            MARITVDDCLKRIPNRF LTLAATYRARQ+S GAS LVEPN+DK TVIALREIATGKVG EVLK+N   P P
Sbjct:    1 MARITVDDCLKRIPNRFHLTLAATYRARQLSAGASPLVEPNRDKHTVIALREIATGKVGTEVLKRNATPPSP 72

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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: UPI0019C1ED3B (DNA-directed RNA polymerase subunit omega n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019C1ED3B)

HSP 1 Score: 118 bits (296), Expect = 2.700e-33
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0

Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKN-------PASPMPVATP 76
            MARITVDDCLKRIPNRFQLTL ATYRARQ+S+GAS LVEPN+DK TVIALREIA GK+G+EVL++N       P +P PVA P
Sbjct:    1 MARITVDDCLKRIPNRFQLTLTATYRARQLSSGASPLVEPNRDKFTVIALREIAVGKIGVEVLRRNQLAAISAPVAPAPVAPP 83

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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A521Z1H2_9PROT (DNA-directed RNA polymerase subunit omega n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521Z1H2_9PROT)

HSP 1 Score: 115 bits (289), Expect = 2.240e-32
Identity = 58/70 (82.86%), Postives = 60/70 (85.71%), Query Frame = 0

Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASP 70
            MARITVDDCLKRIPNRF LTLAATYRARQ+  GAS  VEPN+DK TVIALREIA GKVG EVLKKNP  P
Sbjct:    1 MARITVDDCLKRIPNRFHLTLAATYRARQLGAGASPTVEPNRDKYTVIALREIAAGKVGTEVLKKNPTPP 70

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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: UPI001BC264E6 (DNA-directed RNA polymerase subunit omega n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BC264E6)

HSP 1 Score: 112 bits (279), Expect = 6.190e-31
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 0

Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 68
            MARITVDDCLK IPNRF+L LAATYRARQ++TGA+ALVEPN+DKPTVIALREIA GKVG+E+L +  A
Sbjct:    1 MARITVDDCLKLIPNRFELALAATYRARQLATGATALVEPNRDKPTVIALREIAQGKVGMEILNRGRA 68

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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A1F4F0R5_9PROT (DNA-directed RNA polymerase subunit omega n=4 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F0R5_9PROT)

HSP 1 Score: 112 bits (279), Expect = 7.300e-31
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0

Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKN 66
            MARITVDDCLK  PNRFQLTLAATYRARQ+S GAS LVEPNKDK TVIALREIA+GK+G EVLK+N
Sbjct:    1 MARITVDDCLKIFPNRFQLTLAATYRARQLSAGASPLVEPNKDKFTVIALREIASGKIGAEVLKRN 66

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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A5C7JCQ0_9RHOO (DNA-directed RNA polymerase subunit omega n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A5C7JCQ0_9RHOO)

HSP 1 Score: 110 bits (275), Expect = 2.520e-30
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 0

Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 68
            MAR+TVDDCLKRIPNRFQLTLAATYRARQ+S G++A VE +KDKPTV+ALREIA GKVGLEVL +  A
Sbjct:    1 MARVTVDDCLKRIPNRFQLTLAATYRARQLSAGSNAQVESDKDKPTVVALREIAAGKVGLEVLNRGGA 68

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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A5C7K7Z4_9RHOO (DNA-directed RNA polymerase subunit omega n=2 Tax=Rhodocyclaceae TaxID=75787 RepID=A0A5C7K7Z4_9RHOO)

HSP 1 Score: 109 bits (273), Expect = 5.090e-30
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 0

Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 68
            MAR+TVDDCLKRIPNRFQ+TLAATYRARQ+++GA+ LVE  KDKPTVIALREI +GKVGLEVL +  A
Sbjct:    1 MARVTVDDCLKRIPNRFQMTLAATYRARQLASGATPLVETEKDKPTVIALREIGSGKVGLEVLNRGQA 68

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BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A011NTH9_9PROT (DNA-directed RNA polymerase subunit omega n=7 Tax=Candidatus Accumulibacter TaxID=327159 RepID=A0A011NTH9_9PROT)

HSP 1 Score: 108 bits (269), Expect = 2.080e-29
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 0

Query:    1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 68
            MAR+TVDDCL RIPNRFQ+TLAATYRARQ++ GAS L++ N+DKPTV+ALREIA GKVGLEVL +  A
Sbjct:    1 MARVTVDDCLTRIPNRFQMTLAATYRARQITAGASPLIDANRDKPTVMALREIALGKVGLEVLNRGQA 68

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1Q6ZS94_9BACT	1.360e-35	88.57	DNA-directed RNA polymerase subunit omega n=2 Tax=...	[more]
A0A537BUW0_9PROT	5.550e-35	87.14	DNA-directed RNA polymerase subunit omega n=2 Tax=...	[more]
A0A1F4EYR1_9PROT	9.490e-34	83.33	DNA-directed RNA polymerase subunit omega n=2 Tax=...	[more]
UPI0019C1ED3B	2.700e-33	73.49	DNA-directed RNA polymerase subunit omega n=1 Tax=...	[more]
A0A521Z1H2_9PROT	2.240e-32	82.86	DNA-directed RNA polymerase subunit omega n=2 Tax=...	[more]
UPI001BC264E6	6.190e-31	79.41	DNA-directed RNA polymerase subunit omega n=1 Tax=...	[more]
A0A1F4F0R5_9PROT	7.300e-31	84.85	DNA-directed RNA polymerase subunit omega n=4 Tax=...	[more]
A0A5C7JCQ0_9RHOO	2.520e-30	79.41	DNA-directed RNA polymerase subunit omega n=1 Tax=...	[more]
A0A5C7K7Z4_9RHOO	5.090e-30	77.94	DNA-directed RNA polymerase subunit omega n=2 Tax=...	[more]
A0A011NTH9_9PROT	2.080e-29	75.00	DNA-directed RNA polymerase subunit omega n=7 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006110	RNA polymerase, subunit omega/Rpo6/RPB6	SMART	SM01409	RNA_pol_Rpb6_2	coord: 8..60 e-value: 1.5E-14 score: 64.3
IPR006110	RNA polymerase, subunit omega/Rpo6/RPB6	PFAM	PF01192	RNA_pol_Rpb6	coord: 8..59 e-value: 6.5E-17 score: 61.2
IPR036161	RPB6/omega subunit-like superfamily	GENE3D	3.90.940.10		coord: 2..74 e-value: 1.7E-24 score: 87.6
IPR036161	RPB6/omega subunit-like superfamily	SUPERFAMILY	63562	RPB6/omega subunit-like	coord: 1..65
IPR003716	DNA-directed RNA polymerase, omega subunit	TIGRFAM	TIGR00690	TIGR00690	coord: 1..58 e-value: 6.2E-21 score: 72.2
IPR003716	DNA-directed RNA polymerase, omega subunit	PANTHER	PTHR34476	DNA-DIRECTED RNA POLYMERASE SUBUNIT OMEGA	coord: 1..65
IPR003716	DNA-directed RNA polymerase, omega subunit	HAMAP	MF_00366	RNApol_bact_RpoZ	coord: 1..61 score: 16.962601

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig13501	contig	P-wetherbeei_contig13501:631..861 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig13501.1.1	mRNA_P-wetherbeei_contig13501.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig13501 631..861 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig13501.1.1 ID=prot_P-wetherbeei_contig13501.1.1|Name=mRNA_P-wetherbeei_contig13501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIAL
REIATGKVGLEVLKKNPASPMPVATP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006110	Pol_omega/Rpo6/RPB6
IPR036161	RPB6/omega-like_sf
IPR003716	DNA-dir_RNA_pol_omega