mRNA_P-wetherbeei_contig13501.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A1Q6ZS94_9BACT (DNA-directed RNA polymerase subunit omega n=2 Tax=Bacteria TaxID=2 RepID=A0A1Q6ZS94_9BACT) HSP 1 Score: 124 bits (310), Expect = 1.360e-35 Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 1
Query: 1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASP 210
MARITVDDCLKRIPNRFQLTLAATYRARQ+ GAS LVEPN+DK TVIALREIATGKVG EVLKKNPA P
Sbjct: 1 MARITVDDCLKRIPNRFQLTLAATYRARQLGAGASPLVEPNRDKSTVIALREIATGKVGTEVLKKNPAPP 70
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A537BUW0_9PROT (DNA-directed RNA polymerase subunit omega n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A537BUW0_9PROT) HSP 1 Score: 122 bits (306), Expect = 5.550e-35 Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 1
Query: 1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASP 210
MARITVDDCLKRIPNRFQLTLAATYRARQ+ GAS LVEPN+DK TVIALREIATGKVG EVLKKNP P
Sbjct: 1 MARITVDDCLKRIPNRFQLTLAATYRARQLGAGASPLVEPNRDKSTVIALREIATGKVGTEVLKKNPTPP 70
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A1F4EYR1_9PROT (DNA-directed RNA polymerase subunit omega n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EYR1_9PROT) HSP 1 Score: 119 bits (298), Expect = 9.490e-34 Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASPMP 216
MARITVDDCLKRIPNRF LTLAATYRARQ+S GAS LVEPN+DK TVIALREIATGKVG EVLK+N P P
Sbjct: 1 MARITVDDCLKRIPNRFHLTLAATYRARQLSAGASPLVEPNRDKHTVIALREIATGKVGTEVLKRNATPPSP 72
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: UPI0019C1ED3B (DNA-directed RNA polymerase subunit omega n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019C1ED3B) HSP 1 Score: 118 bits (296), Expect = 2.700e-33 Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 1
Query: 1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKN-------PASPMPVATP 228
MARITVDDCLKRIPNRFQLTL ATYRARQ+S+GAS LVEPN+DK TVIALREIA GK+G+EVL++N P +P PVA P
Sbjct: 1 MARITVDDCLKRIPNRFQLTLTATYRARQLSSGASPLVEPNRDKFTVIALREIAVGKIGVEVLRRNQLAAISAPVAPAPVAPP 83
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A521Z1H2_9PROT (DNA-directed RNA polymerase subunit omega n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521Z1H2_9PROT) HSP 1 Score: 115 bits (289), Expect = 2.240e-32 Identity = 58/70 (82.86%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPASP 210
MARITVDDCLKRIPNRF LTLAATYRARQ+ GAS VEPN+DK TVIALREIA GKVG EVLKKNP P
Sbjct: 1 MARITVDDCLKRIPNRFHLTLAATYRARQLGAGASPTVEPNRDKYTVIALREIAAGKVGTEVLKKNPTPP 70
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: UPI001BC264E6 (DNA-directed RNA polymerase subunit omega n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BC264E6) HSP 1 Score: 112 bits (279), Expect = 6.190e-31 Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1
Query: 1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 204
MARITVDDCLK IPNRF+L LAATYRARQ++TGA+ALVEPN+DKPTVIALREIA GKVG+E+L + A
Sbjct: 1 MARITVDDCLKLIPNRFELALAATYRARQLATGATALVEPNRDKPTVIALREIAQGKVGMEILNRGRA 68
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A1F4F0R5_9PROT (DNA-directed RNA polymerase subunit omega n=4 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F0R5_9PROT) HSP 1 Score: 112 bits (279), Expect = 7.300e-31 Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1
Query: 1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKN 198
MARITVDDCLK PNRFQLTLAATYRARQ+S GAS LVEPNKDK TVIALREIA+GK+G EVLK+N
Sbjct: 1 MARITVDDCLKIFPNRFQLTLAATYRARQLSAGASPLVEPNKDKFTVIALREIASGKIGAEVLKRN 66
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A5C7JCQ0_9RHOO (DNA-directed RNA polymerase subunit omega n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A5C7JCQ0_9RHOO) HSP 1 Score: 110 bits (275), Expect = 2.520e-30 Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1
Query: 1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 204
MAR+TVDDCLKRIPNRFQLTLAATYRARQ+S G++A VE +KDKPTV+ALREIA GKVGLEVL + A
Sbjct: 1 MARVTVDDCLKRIPNRFQLTLAATYRARQLSAGSNAQVESDKDKPTVVALREIAAGKVGLEVLNRGGA 68
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A5C7K7Z4_9RHOO (DNA-directed RNA polymerase subunit omega n=2 Tax=Rhodocyclaceae TaxID=75787 RepID=A0A5C7K7Z4_9RHOO) HSP 1 Score: 109 bits (273), Expect = 5.090e-30 Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 1
Query: 1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 204
MAR+TVDDCLKRIPNRFQ+TLAATYRARQ+++GA+ LVE KDKPTVIALREI +GKVGLEVL + A
Sbjct: 1 MARVTVDDCLKRIPNRFQMTLAATYRARQLASGATPLVETEKDKPTVIALREIGSGKVGLEVLNRGQA 68
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Match: A0A011NTH9_9PROT (DNA-directed RNA polymerase subunit omega n=7 Tax=Candidatus Accumulibacter TaxID=327159 RepID=A0A011NTH9_9PROT) HSP 1 Score: 108 bits (269), Expect = 2.080e-29 Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1
Query: 1 MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALREIATGKVGLEVLKKNPA 204
MAR+TVDDCL RIPNRFQ+TLAATYRARQ++ GAS L++ N+DKPTV+ALREIA GKVGLEVL + A
Sbjct: 1 MARVTVDDCLTRIPNRFQMTLAATYRARQITAGASPLIDANRDKPTVMALREIALGKVGLEVLNRGQA 68 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13501.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13501.1.1 >prot_P-wetherbeei_contig13501.1.1 ID=prot_P-wetherbeei_contig13501.1.1|Name=mRNA_P-wetherbeei_contig13501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp MARITVDDCLKRIPNRFQLTLAATYRARQVSTGASALVEPNKDKPTVIALback to top mRNA from alignment at P-wetherbeei_contig13501:631..861- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13501.1.1 ID=mRNA_P-wetherbeei_contig13501.1.1|Name=mRNA_P-wetherbeei_contig13501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig13501:631..861- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13501:631..861- >mRNA_P-wetherbeei_contig13501.1.1 ID=mRNA_P-wetherbeei_contig13501.1.1|Name=mRNA_P-wetherbeei_contig13501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig13501:631..861- (Phaeothamnion wetherbeei SAG_119_79)back to top |