prot_P-wetherbeei_contig1350.3.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1350.3.1
Unique Nameprot_P-wetherbeei_contig1350.3.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length183
Homology
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Match: A0A7S3XZ41_HETAK (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ41_HETAK)

HSP 1 Score: 146 bits (368), Expect = 2.020e-41
Identity = 69/125 (55.20%), Postives = 84/125 (67.20%), Query Frame = 0
Query:   32 TRFEIELEFVQCLSRPNYLHCGKKYVLLPPCTSLPRQTLSKTVLAQNRYFDDPAFLAFLRYLSYWKRPEYAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQHFHTTRYVE 156
            +RFE+ELEFVQCLS P YLH                       LAQN+YF+DPAF+ FL YL YW+RPEYAKF+ YPHCL F+++L D   E FRKELA  GF+++VHQQQFFHWQH+   RY +
Sbjct:   45 SRFEVELEFVQCLSSPEYLH----------------------YLAQNKYFEDPAFINFLHYLQYWRRPEYAKFIIYPHCLAFMEMLED---EAFRKELAKPGFKEFVHQQQFFHWQHYINNRYKD 144          
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Match: A0A835Z5G5_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.910e-40
Identity = 73/135 (54.07%), Postives = 86/135 (63.70%), Query Frame = 0
Query:   14 PQAPVDSAGALSTGVSARTRFEIELEFVQCLSRPNYLHCGKKYVLLPPCTSLPRQTLSKTVLAQNRYFDDPAFLAFLRYLSYWKRPEYAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQH 148
            P AP  +A A   G     RFE+ELEFVQCL+ P YLH                       LAQ RYFDDPAF+AFL+YL+YW+RP+YAK++ YPHCL  LD L +S+   FR EL ME FRD+VHQQQFFHWQH
Sbjct:    9 PPAPPTTAAAEDVGAQ---RFEVELEFVQCLASPEYLH----------------------FLAQQRYFDDPAFMAFLQYLTYWRRPQYAKYLMYPHCLAMLDALLNSKR--FRSELLMESFRDFVHQQQFFHWQH 116          
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Match: A0A662WG80_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WG80_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.010e-36
Identity = 64/119 (53.78%), Postives = 83/119 (69.75%), Query Frame = 0
Query:   33 RFEIELEFVQCLSRPNYLHCGKKYVLLPPCTS--LPRQTLSKTVLAQNRYFDDPAFLAFLRYLSYWKRPEYAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQHF 149
            RF++ELEF+QCL+ P YL+C    V  P C S   P Q +   +LA NRYFD+PAF+ +L+YL YWK+P+YAK++ YPHCL FLD+L D   E FR+ +A E F   VH QQF+HWQ F
Sbjct:   16 RFQMELEFIQCLASPAYLNCAHAAVS-PVCLSSLAPPQAVRVEILAINRYFDNPAFMNYLQYLKYWKQPQYAKYIVYPHCLAFLDMLED---ERFRQMIAREDFMTLVHGQQFYHWQTF 130          
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Match: A0A662XX93_9STRA (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XX93_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.170e-34
Identity = 62/118 (52.54%), Postives = 81/118 (68.64%), Query Frame = 0
Query:   33 RFEIELEFVQCLSRPNYLHCGKKYVLLPPCTSLPRQTLSKTV-LAQNRYFDDPAFLAFLRYLSYWKRPEYAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQHF 149
            RF++ELEF+QCL+ P YL+C        P + LP    S  + LA NRYFD+PAF+ +L+YL YWK+P+YAK++ YPHCL FLD+L D   E FR+ +A E F   VH QQF+HWQ F
Sbjct:   16 RFQMELEFIQCLASPAYLNCA--CAATSPVSRLPPLPSSFAIFLAINRYFDNPAFMNYLQYLKYWKQPQYAKYIVYPHCLAFLDMLED---ERFRQMIAREDFMTLVHGQQFYHWQTF 128          
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Match: F0WII8_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=2 Tax=Albugo TaxID=65356 RepID=F0WII8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 8.480e-32
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 0
Query:   33 RFEIELEFVQCLSRPNYLHCGKKYVLLPPCTSLPRQTLSKTV-LAQNRYFDDPAFLAFLRYLSYWKRPEYAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQHFHTTRYVE 156
            RF+IELEFVQCL+ P YL+C     L      L     S +V LA NRYF++PAF+ +++YL YWK+PEYA+++ YPHCL FLD++   + E FR+ +A + F   VH QQF+HW+ F   R  E
Sbjct:   12 RFQIELEFVQCLASPAYLNCR----LSKSAMLLVWLLYSTSVDLATNRYFENPAFMNYIKYLEYWKKPEYAQYIVYPHCLAFLDLI---QTERFRQMIARDDFMTLVHSQQFYHWRTFLNNRMTE 129          
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Match: UPI001CFBBC9A (mediator of RNA polymerase II transcription subunit 31-like n=2 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFBBC9A)

HSP 1 Score: 122 bits (305), Expect = 2.100e-31
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = 0
Query:   33 RFEIELEFVQCLSRPNYLHCGKKYVLLPPCTSLPRQTLSKTVLAQNRYFDDPAFLAFLRYLSYWKRPEYAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQHFHTTRYVEPMATPAPE 164
            RF +ELEFVQCL+ P Y+HC    +L P   SL  ++       QNRYF+D AF+ +L+YL YW++PEY KF+ YPHCL FL++L   +N  FR  +A  G ++  H+QQFF W+++   R    +  P PE
Sbjct:   30 RFLLELEFVQCLANPTYIHC----ILAPNRNSLVEES-------QNRYFEDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLELL---QNANFRNSMAHPGSKELAHRQQFFFWKNYRNNRLKHILPRPLPE 147          
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Match: A0A6H5L203_9PHAE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L203_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.410e-31
Identity = 65/132 (49.24%), Postives = 76/132 (57.58%), Query Frame = 0
Query:   32 TRFEIELEFVQCLSRPNYLHCGKKYVLLPPCTSLPRQTLSKTVLAQNRYFDDPAFLAFLRYLSYWKRPEYAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQHFHTTRYVEPMATPAP 163
            TRFE+ELE + CL+ P YLH                       LAQ+ Y DD AF+ FL YL Y+KRPEYAKF+TYPH L  LD+L +  N  FRKE+A   FRD+VHQQQF HWQ   T     P A  AP
Sbjct:    6 TRFEMELELMNCLASPEYLH----------------------YLAQSGYLDDRAFVRFLEYLQYFKRPEYAKFITYPHSLAMLDLLIN--NPPFRKEIAHVSFRDFVHQQQFLHWQFGKTAAPPRPPAASAP 113          
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Match: A0A6P6VXN5_COFAR (Mediator of RNA polymerase II transcription subunit 31 n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6VXN5_COFAR)

HSP 1 Score: 119 bits (299), Expect = 1.420e-30
Identity = 64/164 (39.02%), Postives = 89/164 (54.27%), Query Frame = 0
Query:    1 MATENDADTSIRPPQAPVDSAGALSTGVSARTRFEIELEFVQCLSRPNYLHCGKKYVLLPPCTSLPRQTLSKTVLAQNRYFDDPAFLAFLRYLSYWKRPEYAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQHFHTTRYVEPMATPAPE 164
            MA+ NDA+ S +PP +P             R RF +ELEFVQCL+ P Y+H                       LAQNRYF+D AF+ +L+YL YW+ PEY KF+ YPHCL FL++L   +N  FR  +A    ++  H+QQF+ W+++   R    +  P PE
Sbjct:    1 MASNNDANDSEKPPSSP--KKNVYKDPDDGRQRFLLELEFVQCLANPTYIH----------------------YLAQNRYFEDEAFIGYLKYLQYWQLPEYIKFIMYPHCLFFLELL---QNPNFRNAMAHPANKELAHRQQFYFWKNYRNNRLKHILPRPLPE 137          
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Match: UPI00053FC38E (mediator of RNA polymerase II transcription subunit 31 isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FC38E)

HSP 1 Score: 119 bits (298), Expect = 1.580e-30
Identity = 64/164 (39.02%), Postives = 88/164 (53.66%), Query Frame = 0
Query:    1 MATENDADTSIRPPQAPVDSAGALSTGVSARTRFEIELEFVQCLSRPNYLHCGKKYVLLPPCTSLPRQTLSKTVLAQNRYFDDPAFLAFLRYLSYWKRPEYAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQHFHTTRYVEPMATPAPE 164
            MA+ NDAD +   P     +          R RF +ELEFVQCL+ P Y+H                       LAQNRYFDD AF+ +L+YL YW++PEY KF+ YPHCL FL++L   +N  FR  +A  G ++  H+QQF+ W+++   R    +  P PE
Sbjct:    1 MASSNDADDTSNSPSL---TQNVYKDPDDGRQRFLLELEFVQCLANPTYIH----------------------YLAQNRYFDDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLELL---QNANFRNAMAHPGSKELAHRQQFYFWKNYRNNRLKHILPRPLPE 136          
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Match: A0A1Q3C042_CEPFO (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3C042_CEPFO)

HSP 1 Score: 118 bits (296), Expect = 3.600e-30
Identity = 65/164 (39.63%), Postives = 90/164 (54.88%), Query Frame = 0
Query:    1 MATENDADTSIRPPQAPVDSAGALSTGVSARTRFEIELEFVQCLSRPNYLHCGKKYVLLPPCTSLPRQTLSKTVLAQNRYFDDPAFLAFLRYLSYWKRPEYAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQHFHTTRYVEPMATPAPE 164
            MA+  ++D S   P +P +       G   R RF +ELEFVQCL+ P Y+H                       LAQNRYF+D AF+ +L+YL YW+RPEY KF+ YPHCL FL++L   +N  FR  +A  G ++  H+QQFF W+++   R    +  P PE
Sbjct:    1 MASAKESDDSPNTPSSPNNVFKDPDDG---RQRFLLELEFVQCLANPTYIH----------------------YLAQNRYFEDEAFIGYLKYLQYWQRPEYTKFIMYPHCLYFLELL---QNANFRNAMAHPGNKELAHRQQFFFWKNYRNNRLKHILPRPLPE 136          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1350.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XZ41_HETAK2.020e-4155.20Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z5G5_9STRA2.910e-4054.07Mediator of RNA polymerase II transcription subuni... [more]
A0A662WG80_9STRA2.010e-3653.78Mediator of RNA polymerase II transcription subuni... [more]
A0A662XX93_9STRA2.170e-3452.54Mediator of RNA polymerase II transcription subuni... [more]
F0WII8_9STRA8.480e-3248.00Mediator of RNA polymerase II transcription subuni... [more]
UPI001CFBBC9A2.100e-3144.70mediator of RNA polymerase II transcription subuni... [more]
A0A6H5L203_9PHAE6.410e-3149.24Mediator of RNA polymerase II transcription subuni... [more]
A0A6P6VXN5_COFAR1.420e-3039.02Mediator of RNA polymerase II transcription subuni... [more]
UPI00053FC38E1.580e-3039.02mediator of RNA polymerase II transcription subuni... [more]
A0A1Q3C042_CEPFO3.600e-3039.63Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 74..149
e-value: 1.3E-22
score: 79.6
coord: 32..52
e-value: 1.3E-5
score: 25.2
IPR008831Mediator complex, subunit Med31PANTHERPTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31coord: 28..169
IPR038089Mediator of RNA polymerase II, subunit Med31 superfamilyGENE3D1.10.10.1340Mediator of RNA polymerase II, submodule Med31 (Soh1)coord: 22..146
e-value: 1.1E-34
score: 120.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..182
NoneNo IPR availablePANTHERPTHR13186:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31coord: 28..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1350contigP-wetherbeei_contig1350:3549..4604 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1350.3.1mRNA_P-wetherbeei_contig1350.3.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1350 3549..6148 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1350.3.1 ID=prot_P-wetherbeei_contig1350.3.1|Name=mRNA_P-wetherbeei_contig1350.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
MATENDADTSIRPPQAPVDSAGALSTGVSARTRFEIELEFVQCLSRPNYL
HCGKKYVLLPPCTSLPRQTLSKTVLAQNRYFDDPAFLAFLRYLSYWKRPE
YAKFVTYPHCLGFLDILNDSENELFRKELAMEGFRDYVHQQQFFHWQHFH
TTRYVEPMATPAPEPPPQAPPPVPGPGQPLAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008831Mediator_Med31
IPR038089Med31_sf