mRNA_P-wetherbeei_contig13356.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13356.2.1
Unique NamemRNA_P-wetherbeei_contig13356.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Match: UPI001D0C9A56 (YHS domain-containing protein n=1 Tax=Roseibaca sp. Y0-43 TaxID=2816854 RepID=UPI001D0C9A56)

HSP 1 Score: 170 bits (430), Expect = 8.870e-52
Identity = 81/139 (58.27%), Postives = 101/139 (72.66%), Query Frame = 1
Query:    7 KRRLVLALLLAAAAFPVRAEIVNARGGLAIEGYDPVAYFAEGRARRGAVAYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIVPEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANWPG 423
            +R L++A LLA  A P+ A+   A     ++GYDPVAYF EG  RRG  +Y  DW G RW F S  NRDAFAADPA YAP+YGG CA+ +A+GY AP+ PEAW IVDG+LYLN +R +QR W  D+PG+IA+A+ANWPG
Sbjct:    4 RRALLVATLLALPATPLLAQAAPA-----LDGYDPVAYFTEGAPRRGDASYSLDWNGQRWHFASAANRDAFAADPAAYAPQYGGNCAWAVAEGYLAPVDPEAWVIVDGKLYLNANRRIQRRWERDIPGFIARADANWPG 137          
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Match: UPI001BAB24EC (YHS domain protein n=1 Tax=Roseomonas eburnea TaxID=1346889 RepID=UPI001BAB24EC)

HSP 1 Score: 170 bits (431), Expect = 1.000e-51
Identity = 78/127 (61.42%), Postives = 91/127 (71.65%), Query Frame = 1
Query:   52 PVRAEIVNARGGLAIEGYDPVAYFAEGRARRGAVAYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIVPEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANWPGQST 432
            P RA  VNA  G+A+ G D VAYF EGR  +G   +   WRGA W F S  NRD FAA+P RYAP YGG+CAY +++GY API P AW IVDGRL+LNY RSVQR W  D+PG IA+A+ANWPG ST
Sbjct:   29 PARAAQVNAEDGVAVRGTDVVAYFTEGRPTQGRAEFTRMWRGAAWRFASAANRDRFAAEPERYAPAYGGFCAYAVSEGYTAPIDPAAWRIVDGRLFLNYDRSVQRRWERDIPGRIARADANWPGLST 155          
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Match: UPI000E1B6D2F (YHS domain-containing protein n=1 Tax=Jannaschia formosa TaxID=2259592 RepID=UPI000E1B6D2F)

HSP 1 Score: 168 bits (425), Expect = 6.580e-51
Identity = 74/116 (63.79%), Postives = 88/116 (75.86%), Query Frame = 1
Query:   76 ARGGLAIEGYDPVAYFAEGRARRGAVAYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIVPEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANWPG 423
            A GG+AI+G DPVAYF EGR   G  A  HDW GA W F +  NR AFAADP  YAP+YGG+CA+ +A+GY AP  PEAW IVDG+LYLNYSR +QR W  D+PG+IA+A+ANWPG
Sbjct:   30 AEGGVAIDGTDPVAYFTEGRPVPGDAAITHDWNGATWRFATEANRAAFAADPEAYAPQYGGFCAWAVAEGYTAPTTPEAWEIVDGKLYLNYSRRIQRRWERDIPGHIARADANWPG 145          
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Match: A0A2Y9AZK5_9RHOB (Uncharacterized protein n=1 Tax=Jannaschia seohaensis TaxID=475081 RepID=A0A2Y9AZK5_9RHOB)

HSP 1 Score: 167 bits (422), Expect = 1.940e-50
Identity = 80/132 (60.61%), Postives = 94/132 (71.21%), Query Frame = 1
Query:   34 LAAAAFP--VRAEIVNARGGLAIEGYDPVAYFAEGRARRGAVAYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIVPEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANWPG 423
            LAA A P    A+ V A GG+AI+G DPVAYF EGR   G  A  HDW GA W F +  NR  FAADP  YAP+YGGYCA+ +A+GY A  VPEAW IVDG+LYLNYSR +QR W  D+PG I++A+ANWPG
Sbjct:   16 LAAVALPRVAAAQSVYAEGGVAIDGTDPVAYFTEGRPVAGDAAITHDWNGATWRFSTEANRADFAADPEAYAPQYGGYCAWAVAEGYTASTVPEAWEIVDGKLYLNYSRRIQRRWERDIPGNISRADANWPG 147          
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Match: UPI001057CB43 (YHS domain-containing protein n=1 Tax=Paracraurococcus ruber TaxID=77675 RepID=UPI001057CB43)

HSP 1 Score: 165 bits (417), Expect = 1.190e-49
Identity = 83/142 (58.45%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    1 RMKRRLVLALLL---AAAAFPVRAEIVNARGGLAIEGYDPVAYFAEGRARRGAVAYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIVPEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANW 417
            R  RR +L LLL   A  A P       A  GLAI G DPVAYF EGR   G   + HDWRGA WLF S  NRDAFAA P RYAP YGG+CAY +++GY AP  P AW IVDGRL+LNY RSVQRTW  D+PG + + +ANW
Sbjct:    3 RPSRRRLLGLLLLPSATCAQPPAPAQTYAENGLAIRGTDPVAYFTEGRPVPGRAEFRHDWRGATWLFASAANRDAFAAAPDRYAPAYGGFCAYAVSEGYTAPTDPAAWRIVDGRLFLNYDRSVQRTWEGDIPGRVRRGDANW 144          
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Match: A0A848ECG9_9PROT (YHS domain protein n=2 Tax=Roseomonas TaxID=125216 RepID=A0A848ECG9_9PROT)

HSP 1 Score: 164 bits (416), Expect = 1.850e-49
Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = 1
Query:   61 AEIVNARGGLAIEGYDPVAYFAEGRARRGAVAYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIVPEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANWP 420
            A  VNA  G+A+ G D VAYFAEGRA  G+ A+ H WRGA W F S  NRD FAADP RYAP YGG+CA+ +++GY API P+AW IVDGRL+LNY ++++R W  D+PG +A+A+ANWP
Sbjct:   31 APAVNAEDGVAVRGTDVVAYFAEGRAVAGSPAFTHAWRGAIWRFASAANRDLFAADPGRYAPAYGGFCAFAVSEGYTAPIDPQAWRIVDGRLFLNYDQAIKRRWERDIPGRVARADANWP 150          
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Match: UPI001EF2DCA2 (YHS domain protein n=1 Tax=Thalassobius sp. Cn5-15 TaxID=2917763 RepID=UPI001EF2DCA2)

HSP 1 Score: 164 bits (416), Expect = 1.850e-49
Identity = 74/121 (61.16%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   58 RAEIVNARGGLAIEGYDPVAYFAEGRARRGAVAYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIVPEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANWP 420
            R   +   GG+A++G D VAYF EG+   G  +  HDW+GA W F S  NRDAFAA+PA YAP++GGYCAY +++G  AP VPEAW IVDG+LYLN+S+SVQ+ WL DVPG IAKAEANWP
Sbjct:   30 RTPEIYTEGGIAVDGSDVVAYFTEGKPVTGKPSITHDWKGATWQFASVENRDAFAANPAAYAPQFGGYCAYAVSKGATAPTVPEAWRIVDGKLYLNFSKSVQKVWLQDVPGNIAKAEANWP 150          
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Match: A0A7C2UF56_9PROT (YHS domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UF56_9PROT)

HSP 1 Score: 164 bits (414), Expect = 2.810e-49
Identity = 76/124 (61.29%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   49 FPVRAEIVNARGGLAIEGYDPVAYFAEGRARRGAVAYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIVPEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANWP 420
            F  +AEI   RGG AI G+DPVAYFAEGR  +G   + H WR A W F +  NRDAF+A P +YAP+YGGYCAYG+A GY   I P AWSIVDG+LYLNYS SV+ +W  D+PGYI KA+A+WP
Sbjct:   19 FAQKAEIYADRGG-AIRGHDPVAYFAEGRPVKGRPEFSHRWRDATWYFATAANRDAFSAAPEKYAPQYGGYCAYGVANGYAVAIDPAAWSIVDGKLYLNYSLSVRESWKKDIPGYIRKADAHWP 141          
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Match: A0A6B1HKW4_9PROT (YHS domain-containing protein n=5 Tax=Bacteria TaxID=2 RepID=A0A6B1HKW4_9PROT)

HSP 1 Score: 163 bits (413), Expect = 5.460e-49
Identity = 72/118 (61.02%), Postives = 84/118 (71.19%), Query Frame = 1
Query:   70 VNARGGLAIEGYDPVAYFAEGRARRGAVAYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIVPEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANWPG 423
            + A GG+AI GYDPVAYF EG+   G   + H W+ A W F S  NRD F  DP R+AP+YGGYCAYG+AQGY   I  + WS+VDG+LYLNY RSVQRTW  D+PGYI KA  NWPG
Sbjct:   36 IFAPGGMAIRGYDPVAYFTEGKPVAGKPEFTHVWKSATWYFSSAANRDKFRQDPERWAPQYGGYCAYGVAQGYAVKIEVDQWSVVDGKLYLNYDRSVQRTWKRDIPGYIRKANKNWPG 153          
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Match: A0A5P8YZ17_9RHOB (Uncharacterized protein n=1 Tax=Roseivivax sp. THAF197b TaxID=2588299 RepID=A0A5P8YZ17_9RHOB)

HSP 1 Score: 163 bits (413), Expect = 5.810e-49
Identity = 74/120 (61.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query:   61 AEIVNARGGLAIEGYDPVAYFAEGRARRGAVAYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIVPEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANWP 420
            A+ V   GG+AI+G DPVAYF EGR   GA    HDWRGA W F    NRDAFAADP  YAP+YGGYCA+ +A+GY A  VPEAW I DG+LYLNYS+ +Q+ W  DVPG I +A+ANWP
Sbjct:   33 AQSVYTEGGIAIDGTDPVAYFTEGRPVAGAADITHDWRGATWRFAGVENRDAFAADPEAYAPQYGGYCAWAVAEGYTAATVPEAWRIEDGKLYLNYSQRIQKRWERDVPGNITRADANWP 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13356.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D0C9A568.870e-5258.27YHS domain-containing protein n=1 Tax=Roseibaca sp... [more]
UPI001BAB24EC1.000e-5161.42YHS domain protein n=1 Tax=Roseomonas eburnea TaxI... [more]
UPI000E1B6D2F6.580e-5163.79YHS domain-containing protein n=1 Tax=Jannaschia f... [more]
A0A2Y9AZK5_9RHOB1.940e-5060.61Uncharacterized protein n=1 Tax=Jannaschia seohaen... [more]
UPI001057CB431.190e-4958.45YHS domain-containing protein n=1 Tax=Paracrauroco... [more]
A0A848ECG9_9PROT1.850e-4960.00YHS domain protein n=2 Tax=Roseomonas TaxID=125216... [more]
UPI001EF2DCA21.850e-4961.16YHS domain protein n=1 Tax=Thalassobius sp. Cn5-15... [more]
A0A7C2UF56_9PROT2.810e-4961.29YHS domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A6B1HKW4_9PROT5.460e-4961.02YHS domain-containing protein n=5 Tax=Bacteria Tax... [more]
A0A5P8YZ17_9RHOB5.810e-4961.67Uncharacterized protein n=1 Tax=Roseivivax sp. THA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13356contigP-wetherbeei_contig13356:888..1328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog102129.Lepto7375DRAFT_5774
PFAMsYHS
Model size441
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.52e-47
EggNOG OGsCOG3350@1|root,COG3350@2|Bacteria,1G6RV@1117|Cyanobacteria,1HBTF@1150|Oscillatoriales
DescriptionYhs domain-containing protein
Cds size438
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185982.5103667-CDS-P-wetherbeei_contig13356:887..13251683185982.5103667-CDS-P-wetherbeei_contig13356:887..1325Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13356 888..1325 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185982.5301387-UTR-P-wetherbeei_contig13356:1325..13281683185982.5301387-UTR-P-wetherbeei_contig13356:1325..1328Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13356 1326..1328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13356.2.1prot_P-wetherbeei_contig13356.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13356 888..1325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13356.2.1

>prot_P-wetherbeei_contig13356.2.1 ID=prot_P-wetherbeei_contig13356.2.1|Name=mRNA_P-wetherbeei_contig13356.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MKRRLVLALLLAAAAFPVRAEIVNARGGLAIEGYDPVAYFAEGRARRGAV
AYFHDWRGARWLFVSGTNRDAFAADPARYAPRYGGYCAYGMAQGYKAPIV
PEAWSIVDGRLYLNYSRSVQRTWLADVPGYIAKAEANWPGQSTAR*
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mRNA from alignment at P-wetherbeei_contig13356:888..1328-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13356.2.1 ID=mRNA_P-wetherbeei_contig13356.2.1|Name=mRNA_P-wetherbeei_contig13356.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig13356:888..1328- (Phaeothamnion wetherbeei SAG_119_79)
CGCATGAAGCGCCGCCTCGTCCTCGCCCTGCTGCTTGCCGCCGCCGCCTT TCCCGTGCGCGCCGAGATCGTCAATGCGCGCGGCGGCCTCGCCATCGAAG GCTACGACCCGGTCGCCTATTTCGCCGAAGGCCGCGCGCGGCGCGGTGCG GTCGCCTATTTCCACGACTGGCGCGGTGCGCGCTGGCTGTTCGTGTCGGG AACCAACCGCGACGCCTTCGCCGCCGATCCGGCGCGCTACGCGCCGCGCT ACGGCGGCTACTGCGCCTACGGCATGGCGCAGGGCTACAAGGCGCCGATC GTGCCGGAGGCGTGGTCGATCGTCGACGGGCGGCTCTATCTCAACTACAG CCGCTCGGTGCAGCGCACCTGGCTCGCGGACGTGCCGGGCTACATCGCGA AGGCCGAGGCGAACTGGCCGGGGCAGTCGACGGCGCGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13356:888..1328-

>mRNA_P-wetherbeei_contig13356.2.1 ID=mRNA_P-wetherbeei_contig13356.2.1|Name=mRNA_P-wetherbeei_contig13356.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig13356:888..1328- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCGCCGCCTCGTCCTCGCCCTGCTGCTTGCCGCCGCCGCCTTTCC
CGTGCGCGCCGAGATCGTCAATGCGCGCGGCGGCCTCGCCATCGAAGGCT
ACGACCCGGTCGCCTATTTCGCCGAAGGCCGCGCGCGGCGCGGTGCGGTC
GCCTATTTCCACGACTGGCGCGGTGCGCGCTGGCTGTTCGTGTCGGGAAC
CAACCGCGACGCCTTCGCCGCCGATCCGGCGCGCTACGCGCCGCGCTACG
GCGGCTACTGCGCCTACGGCATGGCGCAGGGCTACAAGGCGCCGATCGTG
CCGGAGGCGTGGTCGATCGTCGACGGGCGGCTCTATCTCAACTACAGCCG
CTCGGTGCAGCGCACCTGGCTCGCGGACGTGCCGGGCTACATCGCGAAGG
CCGAGGCGAACTGGCCGGGGCAGTCGACGGCGCGCTAG
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