mRNA_P-wetherbeei_contig13299.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13299.1.1
Unique NamemRNA_P-wetherbeei_contig13299.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Match: D7FRX8_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX8_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 3.800e-25
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 VYSYWDHGPLGMQLHPNFPEQPYLFLFYSADGVDPTTNQLWGDACPRLVNNQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTSVTHGNGDLKFYGN-DLLLTSGDSAQA 375
            V ++ DHG L  QLHP+FP +PYLFLFYS   V P   + W   C R+V    P+C+  A LERL + ++V+  G+C+  SF+ S  N   L EDWCS++  H N  ++FY +  LL+ +GDS+QA
Sbjct:   33 VNAWGDHGLLSSQLHPDFPAEPYLFLFYS---VAP---EGWAGECERIVKGL-PFCEQNAVLERLKIDVTVDDDGMCSDWSFSDSENNRVRLMEDWCSSAGAHHNAAMEFYTDGSLLVANGDSSQA 151          
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Match: A0A4D9D6I0_9STRA (GSDH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6I0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.030e-12
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 1
Query:    1 VYSYWDHGPLGMQLHPNFPEQPYLFLFYSADGVDPTTNQLWGDAC---PRLVN-----NQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTSVTHGNGDLKFYGN-DLLLTSGDSA 369
            VYS+WDHG L    HP FP+QPYL++ YS++    +    W D C   P+ V      +  PYC+T A+L RL +   + +A                 L +DWCS++ TH  G + +  +  ++  +GD +
Sbjct:   85 VYSWWDHGLLSASFHPQFPQQPYLYIAYSSE----SPGNPWQDQCVPDPKKVAMTNPPDTRPYCKTMAKLVRLKVDPDLTSAKF------------DQELFQDWCSSTYTHHVGTINWLEDGSMIYGAGDGS 200          
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Match: A0A6J4Y925_9DELT (Cytochrome c551/c552 n=1 Tax=Olavius algarvensis Delta 1 endosymbiont TaxID=334747 RepID=A0A6J4Y925_9DELT)

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-12
Identity = 45/125 (36.00%), Postives = 59/125 (47.20%), Query Frame = 1
Query:    1 VYSYWDHGPLGMQLHPNFPEQPYLFLFYSADGVDPTTNQLWGDACPRLVNNQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTSVTHGNGDLKFYGND--LLLTSGDSA 369
            VYS WD G LG+ +HP+FP  PY+F+ Y+ D     T   W D CP         C  + RL RL ++ S N     TG           +L E W     +H  GDL F G D  L +++GD A
Sbjct:  106 VYSGWDRGLLGLAIHPDFPNTPYIFVLYTFDADVGGTPPKWDDTCPDPPGYTAHGCTVSGRLSRLEMNTSTNQM---TGAE--------QVLIEAWEQQFPSHSIGDLHF-GPDGALYVSAGDGA 218          
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Match: UPI001F1E23EF (PQQ-dependent sugar dehydrogenase n=1 Tax=Yinghuangia sp. KLBMP8922 TaxID=2908204 RepID=UPI001F1E23EF)

HSP 1 Score: 71.2 bits (173), Expect = 9.040e-12
Identity = 45/130 (34.62%), Postives = 57/130 (43.85%), Query Frame = 1
Query:    1 VYSYWDHGPLGMQLHPNFPEQPYLFLFYSADGVDPTTNQLWG------DACPRLVNNQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTSVTHGNGDLKFYGNDLLLTS-GDSA 369
            V+++WD G LG+++ PNFP  P +F+ Y+ D     T   WG      D C      QT  C  T RL +LT     N AG        P  V    L  DWC    +H  G L F  +  L  S GD A
Sbjct:  119 VFNFWDRGMLGIEVSPNFPADPSVFVLYAHDAAPGKTAPYWGTAGTSADNCATPPGAQTYGCVITGRLSKLTAVGGGNTAG--------PEQV----LITDWCQQFPSHSTGSLAFGPDGYLYASAGDGA 236          
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Match: H0KB25_9PSEU (PKD domain-containing protein n=4 Tax=Saccharomonospora azurea TaxID=40988 RepID=H0KB25_9PSEU)

HSP 1 Score: 70.1 bits (170), Expect = 2.230e-11
Identity = 37/119 (31.09%), Postives = 54/119 (45.38%), Query Frame = 1
Query:    1 VYSYWDHGPLGMQLHPNFPEQPYLFLFYSADGVDPTTNQLWGDACPRLVNNQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTSVTHGNGDLKFYGNDLLLTS 357
            V++ WD G LG+ +HP FPE+P+++ FY+ D     T  +W D CP         C  T RL +LT+           G++ AP       L + WC    +H    L F  +  L  S
Sbjct:  103 VFNGWDRGLLGLAVHPEFPEKPHVYAFYTRDAPPGQTAPVWNDQCPSPPGYTEDGCVVTNRLVKLTMGED--------GVAQAPET-----LVDGWCQQYPSHSADTLAFGPDGALYAS 208          
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Match: A0A6J4XRR3_9DELT (Cytochrome c551/c552 n=1 Tax=Olavius algarvensis Delta 1 endosymbiont TaxID=334747 RepID=A0A6J4XRR3_9DELT)

HSP 1 Score: 69.3 bits (168), Expect = 4.080e-11
Identity = 42/125 (33.60%), Postives = 58/125 (46.40%), Query Frame = 1
Query:    1 VYSYWDHGPLGMQLHPNFPEQPYLFLFYSADGVDPTTNQLWGDACPRLVNNQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTSVTHGNGDLKFYGND--LLLTSGDSA 369
            VY+ WD G LG+ +HP+FP+ PY+++ Y+ D     +   WGD CP    +    C  + RL RL             G       V   +L E W     +H  GDL F G D  L +T+GD A
Sbjct:  106 VYNAWDRGLLGLAIHPDFPQVPYIYVLYAFDADIDGSPPKWGDTCPNPPGHTDQGCTVSGRLSRLEAE----------GNQMKDPEV---VLIEAWEQQYPSHSIGDLHF-GPDGALYVTAGDGA 216          
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Match: A0A4R7ZD84_9ACTN (Glucose/arabinose dehydrogenase n=1 Tax=Kribbella sp. VKM Ac-2570 TaxID=2512221 RepID=A0A4R7ZD84_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 5.800e-11
Identity = 42/132 (31.82%), Postives = 59/132 (44.70%), Query Frame = 1
Query:    1 VYSYWDHGPLGMQLHPNFPEQPYLFLFYSADGVDPTTNQLWG------DACPRLVNNQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTSVTHGNGDLKFYGNDLLLTSGDSAQAS 378
            V +YWD G LG+ LHP+FP+ P +++ Y+ DG+       WG      D CP         CQ +ARL        +N  G               +L EDWC    +H  G ++F G D +L +G    AS
Sbjct:   78 VDNYWDRGLLGLALHPDFPQDPRIYVLYTHDGLIGGPTPKWGTPDTADDPCPSPPGPTADGCQASARLS------VINGNGA------------EQVLVEDWCQVFPSHSIGSIEF-GPDGMLYAGAGDGAS 190          
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Match: A0A366LQ62_9ACTN (Sugar dehydrogenase n=2 Tax=Spongiactinospora TaxID=2871671 RepID=A0A366LQ62_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 2.000e-10
Identity = 43/131 (32.82%), Postives = 59/131 (45.04%), Query Frame = 1
Query:    1 VYSYWDHGPLGMQLHPNFPEQPYLFLFYSADGVDPTTNQLWG------DACPRLVNNQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTSVTHGNGDLKFYGND--LLLTSGDSA 369
            V+++WD G LGM LHP+FP+ P +++ Y+ D     T   WG      D CP      +  C  + RL  L+                A  A  P  L  DWC    +H  GDL+F G D  L  ++GD A
Sbjct:   86 VHNFWDRGLLGMALHPDFPQDPRIYVLYTYDAPPGGTAPRWGTAGATDDPCPTPPGPTSDGCLVSGRLSVLS----------------ATGAETP--LVTDWCQQYPSHSVGDLEF-GRDGALYASAGDGA 197          
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Match: UPI001CDA4393 (PQQ-dependent sugar dehydrogenase n=1 Tax=Wangella sp. NEAU-J3 TaxID=2878561 RepID=UPI001CDA4393)

HSP 1 Score: 67.0 bits (162), Expect = 2.700e-10
Identity = 37/126 (29.37%), Postives = 55/126 (43.65%), Query Frame = 1
Query:    1 VYSYWDHGPLGMQLHPNFPEQPYLFLFYSADGVDPTTNQLWG------DACPRLVNNQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTSVTHGNGDLKFYGNDLLLTSG 360
            V++YWD G +GM LHP+FP+ P +++ Y+ D     T   WG      D CP      +  C  + RL  LTL                 + V   ++  DWC    +H  G + F  + +L  SG
Sbjct:   94 VHNYWDRGLIGMALHPDFPDDPRIYVHYTYDAPIGGTAPTWGTEDSVDDDCPTPPGPLSDGCVVSGRLSTLTLD---------------GTGVTERVMINDWCMPFPSHSVGTVAFGPDGMLYASG 204          
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Match: A0A0G4IYG1_PLABS (PKD domain-containing protein (Fragment) n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYG1_PLABS)

HSP 1 Score: 66.6 bits (161), Expect = 3.790e-10
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 1
Query:    1 VYSYWDHGPLGMQLHPNFPEQPYLFLFYSAD---GVD-PTTNQLWGDACPRLVNNQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTSVTHGNGDLKFYGND-LLLTSGDSA 369
             Y++WD G LG+ +  N+P+ P+L++FYS +   G+D P  N      CP    ++  YC T A L R+ + +      I              +L  DWCS S +H  GDL +  +  L LT+GD A
Sbjct:   92 TYTWWDRGMLGVAVDQNYPDAPFLWVFYSVNRLPGLDGPDFNLFDKTTCPA---DRHSYCGTAAHLVRVRVDVPRRKGTI------------EQVLVSDWCSASGSHHIGDLVWAPDGGLYLTAGDGA 204          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13299.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FRX8_ECTSI3.800e-2544.44GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9D6I0_9STRA1.030e-1231.82GSDH domain-containing protein n=2 Tax=Monodopsida... [more]
A0A6J4Y925_9DELT2.000e-1236.00Cytochrome c551/c552 n=1 Tax=Olavius algarvensis D... [more]
UPI001F1E23EF9.040e-1234.62PQQ-dependent sugar dehydrogenase n=1 Tax=Yinghuan... [more]
H0KB25_9PSEU2.230e-1131.09PKD domain-containing protein n=4 Tax=Saccharomono... [more]
A0A6J4XRR3_9DELT4.080e-1133.60Cytochrome c551/c552 n=1 Tax=Olavius algarvensis D... [more]
A0A4R7ZD84_9ACTN5.800e-1131.82Glucose/arabinose dehydrogenase n=1 Tax=Kribbella ... [more]
A0A366LQ62_9ACTN2.000e-1032.82Sugar dehydrogenase n=2 Tax=Spongiactinospora TaxI... [more]
UPI001CDA43932.700e-1029.37PQQ-dependent sugar dehydrogenase n=1 Tax=Wangella... [more]
A0A0G4IYG1_PLABS3.790e-1032.81PKD domain-containing protein (Fragment) n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13299contigP-wetherbeei_contig13299:403..1201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1122182.KB903819_gene173
PFAMsBig_5,CarboxypepD_reg,F5_F8_type_C,GSDH,PA14,PKD
Model size402
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue3e-15
EggNOG OGsCOG2133@1|root,COG2373@1|root,COG3291@1|root,COG2133@2|Bacteria,COG2373@2|Bacteria,COG3291@2|Bacteria,2GJFY@201174|Actinobacteria,4DASA@85008|Micromonosporales
DescriptionRepeats in polycystic kidney disease 1 (PKD1) and other proteins
Cds size402
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.3609452-CDS-P-wetherbeei_contig13299:402..7121683185980.3609452-CDS-P-wetherbeei_contig13299:402..712Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13299 403..712 +
1683185980.3705258-CDS-P-wetherbeei_contig13299:1109..12011683185980.3705258-CDS-P-wetherbeei_contig13299:1109..1201Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13299 1110..1201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13299.1.1prot_P-wetherbeei_contig13299.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13299 403..1201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13299.1.1

>prot_P-wetherbeei_contig13299.1.1 ID=prot_P-wetherbeei_contig13299.1.1|Name=mRNA_P-wetherbeei_contig13299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
VYSYWDHGPLGMQLHPNFPEQPYLFLFYSADGVDPTTNQLWGDACPRLVN
NQTPYCQTTARLERLTLSISVNAAGICTGISFAPSAVNPYLLKEDWCSTS
VTHGNGDLKFYGNDLLLTSGDSAQASRPFTHRK*
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mRNA from alignment at P-wetherbeei_contig13299:403..1201+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13299.1.1 ID=mRNA_P-wetherbeei_contig13299.1.1|Name=mRNA_P-wetherbeei_contig13299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=799bp|location=Sequence derived from alignment at P-wetherbeei_contig13299:403..1201+ (Phaeothamnion wetherbeei SAG_119_79)
GTCTATTCCTACTGGGACCACGGCCCGCTCGGCATGCAGCTCCATCCGAA TTTCCCGGAGCAGCCCTACCTCTTTCTCTTCTATTCCGCCGACGGGGTTG ATCCCACGACCAACCAGCTCTGGGGCGACGCCTGCCCGCGGCTCGTCAAC AATCAGACGCCATATTGCCAGACGACGGCGCGGCTGGAGCGGCTGACGCT CAGCATATCCGTGAATGCCGCCGGCATCTGCACCGGCATCAGCTTTGCGC CGTCTGCCGTCAACCCGTACCTGCTGAAGGAGGACTGGTGCAGCACCAGC GTAACCCACGGTGGGTTCGTCGCGACGTTTTCTGCCTGCTTTTCGATAAA TTTGCCTCGCGCTGCGTCGTTTGGTCATTCCACCTGATTGGGTTGCACTT TCGGTTGCAAAATTTCTCTATGAAATGGGGTTGGCAGCGGCAGTGGTTTG GGCATCGATGGCAAACGCGGCCAACGGCAGCCCTACTTGAAATTAGAAAC TCTTTCTCTCAGTGTGCTGCGTCAGATCCTGTTGTCAGCTGTTTTACGTG CATCGGTTCTCGCCGGTTTGGCCCATTTCTTTGGATCCTGTCGCATTGCC AATTGCACAAGCCTAGCCGTGTGTCCCACCGTTCATGCTTGTTTCGGTCT GCACCGTTAAACCTTGCTAAGCGTCCTCCGTCCCTCCGCTGCGCCGCGCT CTCCCAGGCAACGGCGACCTTAAATTTTACGGAAACGATCTGCTGTTGAC GTCGGGCGATAGTGCACAGGCAAGCCGTCCTTTTACGCACCGAAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13299:403..1201+

>mRNA_P-wetherbeei_contig13299.1.1 ID=mRNA_P-wetherbeei_contig13299.1.1|Name=mRNA_P-wetherbeei_contig13299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig13299:403..1201+ (Phaeothamnion wetherbeei SAG_119_79)
GTCTATTCCTACTGGGACCACGGCCCGCTCGGCATGCAGCTCCATCCGAA
TTTCCCGGAGCAGCCCTACCTCTTTCTCTTCTATTCCGCCGACGGGGTTG
ATCCCACGACCAACCAGCTCTGGGGCGACGCCTGCCCGCGGCTCGTCAAC
AATCAGACGCCATATTGCCAGACGACGGCGCGGCTGGAGCGGCTGACGCT
CAGCATATCCGTGAATGCCGCCGGCATCTGCACCGGCATCAGCTTTGCGC
CGTCTGCCGTCAACCCGTACCTGCTGAAGGAGGACTGGTGCAGCACCAGC
GTAACCCACGGCAACGGCGACCTTAAATTTTACGGAAACGATCTGCTGTT
GACGTCGGGCGATAGTGCACAGGCAAGCCGTCCTTTTACGCACCGAAAGT
GA
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