mRNA_P-wetherbeei_contig9930.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9930.1.1
Unique NamemRNA_P-wetherbeei_contig9930.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-12
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 1
Query:   28 ETKQKLLLELLVFTTVTCGYDARTRILFRRVSALLSIPWRPMVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGT-KLRNLKIGAAMVGGGALLALTGGLA 342
            E +  +L +L+V   + CGYDARTR+ FRRV   + + W P V+ +ES LAR +  R A             D      T + R  KIGAAM+GGG LLA+TGGLA
Sbjct:   98 EPRSAVLRDLMVIVALRCGYDARTRVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVAR------------DRERELRTDRWRGFKIGAAMIGGGTLLAVTGGLA 191          
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Match: A0A5D6Y658_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y658_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.460e-8
Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   40 KLLLELLVFTTVTCGYDARTRILFRRVSALLSIPWRPMVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGTKLRNLKIGAAMVGGGALLALTGGLATPLI 354
            +LL + L FT    GYDAR R+L RR++ ++ I WR +V   E  + R L +   A      A  P+           RN+ IGAA V GGALLA+TGGLA PLI
Sbjct:  823 QLLEKQLWFTVKAIGYDARARVLLRRLADVMGIEWR-LVTLEEVVIGRALFAEATAMPLEKMAAAPSVW------DWKRNVAIGAAAVTGGALLAVTGGLAAPLI 920          
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Match: A0A2D4BS36_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS36_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 2.860e-7
Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 1
Query:   28 ETKQKLLLELLVFTTVTCGYDARTRILFRRVSALLSIPWRPMVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGTKLRNLKIGAAMVGGGALLALTGGLATPLIIA 360
            E +  +L +LL FT    GYDAR R L R +   + +PW+ ++   E  + R L +   A      A +P+           RN+ IGAA V GGALLALTGGLA P I A
Sbjct:  231 EFQLTILKQLLWFTVKAVGYDARARTLLRVMVETMRLPWK-VITVEEISIGRTLFAEATAMPMEKAAAKPSVW------DWKRNVTIGAAAVTGGALLALTGGLAAPAIAA 334          
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Match: A0A225X3U7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X3U7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.210e-7
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 1
Query:    1 KDTFDDLSLET-KQKLLLELLVFTTVTCGYDARTRILFRRVSALLSIPWRPMVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGTKL----RNLKIGAAMVGGGALLALTGGLATPLIIA 360
            +DTF+ +++E  + ++L  LL FT  + GYDAR R L RR+   + + W   V   E ++ + L +   A      A +P          K+    RN  IGAA V GGALLA+TGGLA P I A
Sbjct:  119 EDTFELMTIENFRFEILKRLLWFTVKSVGYDARARTLLRRLVLAMELQWSD-VTREEVEIGQSLYAEATAMPLDKVAAKP----------KIWDWKRNAAIGAAAVTGGALLAVTGGLAAPAIAA 232          
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Match: A0A6A3L8H1_9STRA (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L8H1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.350e-6
Identity = 43/107 (40.19%), Postives = 56/107 (52.34%), Query Frame = 1
Query:   40 KLLLELLVFTTVTCGYDARTRILFRRVSALLSIPWRPMVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGTKLRNLKIGAAMVGGGALLALTGGLATPLIIA 360
            +++  LL FT  + GYDAR R L RR+   + + WR  V   E ++ + L +   A      A +P        G   RN  IGAA V GGALLA+TGGLA P I A
Sbjct:  175 EVVKRLLWFTVKSVGYDARARTLLRRLMLAMQLQWRD-VTREEVEIGQTLFAEATAMPLDKVAAKPKL-----WGDWKRNAAIGAAAVTGGALLAVTGGLAAPAIAA 275          
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Match: H3GKH9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKH9_PHYRM)

HSP 1 Score: 55.1 bits (131), Expect = 2.490e-6
Identity = 44/111 (39.64%), Postives = 56/111 (50.45%), Query Frame = 1
Query:   40 KLLLELLVFTTVTCGYDARTRILFRRVSALLSIPWRPMVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGTKL----RNLKIGAAMVGGGALLALTGGLATPLIIA 360
            ++L  LL FT  + GYDAR R L RR++  L + W  +    E  + + L +   A      A +P          KL    RN  IGAA V GGALLA+TGGLA P I A
Sbjct:  149 EILKRLLWFTVKSVGYDARARTLLRRLAVALQLQWTDLTQE-EVAIGQTLFAEATAMPLDKVAAKP----------KLWDWKRNAAIGAAAVTGGALLAVTGGLAAPAIAA 248          
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Match: A0A662WLI0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLI0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.400e-6
Identity = 48/124 (38.71%), Postives = 60/124 (48.39%), Query Frame = 1
Query:    4 DTFDDLSLET-KQKLLLELLVFTTVTCGYDARTRILFRRVSALLSIPWRPMVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGTKL----RNLKIGAAMVGGGALLALTGGLATPLIIA 360
            D+   LS E  + KLL  LL FT    GYDAR R L R +   + + W  +    E ++ R L +   A      A +P          K+    RN  IGAA V GGALLA+TGGLA P I A
Sbjct:  143 DSPSSLSAEAFRLKLLKRLLWFTVKAIGYDARARTLLRLLVVAMDLDWSAITRE-EVEIGRALYAEATAMPLDKVAAKP----------KIWDWKRNAAIGAAAVTGGALLAVTGGLAAPAIAA 255          
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Match: A0A383VL84_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VL84_TETOB)

HSP 1 Score: 54.3 bits (129), Expect = 4.850e-6
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 1
Query:   85 YDARTRILFRRVSALLSIPWRPMVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGTKLRNLKIGAAMVGGGALLALTGGLATPLIIA 360
            YDAR R+  +RV+  L +PW  + A+ +   A+ L+   +A  T  +  R            L  LK+GAA VGGGALLA+TGGLA P I A
Sbjct:  541 YDARARVAVKRVAHWLRVPWPQVRAFEQMWAAQALSVDPSAQPTYSSGSRA-----------LTYLKVGAAAVGGGALLAVTGGLAAPAIAA 621          
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Match: A0A3R8CUC3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R8CUC3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.310e-6
Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 1
Query:   40 KLLLELLVFTTVTCGYDARTRILFRRVSALLSIPWRPMVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGTKL----RNLKIGAAMVGGGALLALTGGLATPLIIA 360
            +++  LL FT  + GYDAR+R LFRR+   + + W   V   E  + +VL +   A      A +P          K+    RN  IGAA + GGALLA+TGGLA P I A
Sbjct:  136 EVIKRLLWFTVKSVGYDARSRTLFRRLVLAMQLQWTD-VTKEEITIGQVLFAEATAMPLDKVAAKP----------KIWDWKRNAAIGAAAMTGGALLAVTGGLAAPAIAA 235          
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Match: A0A3R7IQF8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IQF8_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.150e-5
Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 1
Query:   40 KLLLELLVFTTVTCGYDARTRILFRRVSALLSIPWRPMVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGTKL----RNLKIGAAMVGGGALLALTGGLATPLIIA 360
            +++  LL F   + GYDAR R L RR+   + + WR  V   E ++ + L +   A      A +P          K+    RN  IGAA V GGALLA+TGGLA P I A
Sbjct:   15 EIVKRLLWFIVKSVGYDARARTLLRRLVVAMELDWRA-VTREEVEIGQTLYAEATAMPLDKVAAKP----------KIWDMKRNATIGAAAVAGGALLAVTGGLAAPAIAA 114          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9930.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FP69_ECTSI2.200e-1243.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A5D6Y658_9STRA8.460e-842.86Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A2D4BS36_PYTIN2.860e-739.64Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A225X3U7_9STRA5.210e-737.60Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A3L8H1_9STRA1.350e-640.19Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
H3GKH9_PHYRM2.490e-639.64Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662WLI0_9STRA3.400e-638.71Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A383VL84_TETOB4.850e-641.30Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A3R8CUC3_9STRA6.310e-638.74Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A3R7IQF8_9STRA1.150e-537.84Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9930contigP-wetherbeei_contig9930:168..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FP69
Preferred nameTMCO4
PFAMsDUF726
Model size360
Max annot lvl2759|Eukaryota
KEGG koko:K14773
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
Exons1
Evalue3.61e-13
EggNOG OGsKOG2385@1|root,KOG2385@2759|Eukaryota
DescriptionProtein of unknown function (DUF726)
Cds size360
COG categoryS
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.5207796-CDS-P-wetherbeei_contig9930:167..5271683187117.5207796-CDS-P-wetherbeei_contig9930:167..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9930 168..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9930.1.1prot_P-wetherbeei_contig9930.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9930 168..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9930.1.1

>prot_P-wetherbeei_contig9930.1.1 ID=prot_P-wetherbeei_contig9930.1.1|Name=mRNA_P-wetherbeei_contig9930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
KDTFDDLSLETKQKLLLELLVFTTVTCGYDARTRILFRRVSALLSIPWRP
MVAYIESQLARVLASRFAAPGTGGTAGRPAADAHAGEGTKLRNLKIGAAM
VGGGALLALTGGLATPLIIA
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mRNA from alignment at P-wetherbeei_contig9930:168..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9930.1.1 ID=mRNA_P-wetherbeei_contig9930.1.1|Name=mRNA_P-wetherbeei_contig9930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig9930:168..527- (Phaeothamnion wetherbeei SAG_119_79)
AAGGACACGTTTGATGATCTCTCTCTCGAAACGAAGCAAAAGCTTCTTCT CGAGCTGCTCGTCTTTACCACCGTCACGTGCGGCTACGACGCGAGGACAC GCATCCTCTTTCGCCGCGTCTCCGCACTTCTGTCCATCCCGTGGCGGCCG ATGGTTGCTTACATAGAGAGTCAGCTGGCACGTGTGCTCGCCTCGCGTTT CGCAGCGCCTGGAACCGGCGGAACCGCCGGGCGGCCGGCTGCCGACGCTC ACGCGGGAGAAGGAACGAAGCTGCGGAATCTGAAGATCGGGGCCGCGATG GTCGGCGGAGGGGCGCTGCTCGCGTTAACGGGTGGCCTGGCGACGCCGCT AATCATCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9930:168..527-

>mRNA_P-wetherbeei_contig9930.1.1 ID=mRNA_P-wetherbeei_contig9930.1.1|Name=mRNA_P-wetherbeei_contig9930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig9930:168..527- (Phaeothamnion wetherbeei SAG_119_79)
AAGGACACGTTTGATGATCTCTCTCTCGAAACGAAGCAAAAGCTTCTTCT
CGAGCTGCTCGTCTTTACCACCGTCACGTGCGGCTACGACGCGAGGACAC
GCATCCTCTTTCGCCGCGTCTCCGCACTTCTGTCCATCCCGTGGCGGCCG
ATGGTTGCTTACATAGAGAGTCAGCTGGCACGTGTGCTCGCCTCGCGTTT
CGCAGCGCCTGGAACCGGCGGAACCGCCGGGCGGCCGGCTGCCGACGCTC
ACGCGGGAGAAGGAACGAAGCTGCGGAATCTGAAGATCGGGGCCGCGATG
GTCGGCGGAGGGGCGCTGCTCGCGTTAACGGGTGGCCTGGCGACGCCGCT
AATCATCGCC
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