mRNA_P-wetherbeei_contig9921.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9921.1.1
Unique NamemRNA_P-wetherbeei_contig9921.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Match: D8LTV2_ECTSI ((R)-citramalate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV2_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 1.280e-68
Identity = 114/149 (76.51%), Postives = 126/149 (84.56%), Query Frame = 1
Query:   13 KTVQLYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWPGSNPKDQEFFERARRDLPPESWNRIVAFGSTRRKRIACAADPQLAALLAAGTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLEHFF 459
            +TV++YDTTLRDGTQMEGIS SV DKLKI  +L  FGMHYIEGGWPGSNPKD EFFERAR++LP E+W R+VAFGSTRRK  ACA D QL +L++AGT CVTIVAKAWDLHVD ILEV REENLAMV ESV  LK A +EVML LEHFF
Sbjct:   43 RTVEMYDTTLRDGTQMEGISASVLDKLKIALQLHHFGMHYIEGGWPGSNPKDVEFFERARKELPAEAWERVVAFGSTRRKFKACAEDKQLESLISAGTGCVTIVAKAWDLHVDHILEVPREENLAMVRESVEHLKMAGKEVMLDLEHFF 191          
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Match: A0A836CCG4_9STRA ((R)-citramalate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCG4_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.590e-66
Identity = 115/162 (70.99%), Postives = 126/162 (77.78%), Query Frame = 1
Query:    7 PTKTVQLYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWPGSNPKDQEFFERARRDLPPESWNRIV-----------AFGSTRRKRIACAADPQLAALLAAGTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLEHFF 459
            P + V +YDTTLRDGTQMEGISVSV+DKLKI   L +FGMHYIEGGWPGSNPKD EFFERA+ + PP+ W+RI            AFGSTRRK   C  D QLA L+AAGT CVTIVAKAWDLHVD ILEV REENLAMV ESVAFLKAA +EVM+ LEHFF
Sbjct:   30 PPRLVDIYDTTLRDGTQMEGISVSVDDKLKIARVLSNFGMHYIEGGWPGSNPKDAEFFERAKAEPPPDVWSRIAEXXXXXXXXXAAFGSTRRKNSTCEQDKQLATLIAAGTNCVTIVAKAWDLHVDHILEVPREENLAMVGESVAFLKAAGKEVMIDLEHFF 191          
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Match: A0A6V1Q1T2_HETAK ((R)-citramalate synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q1T2_HETAK)

HSP 1 Score: 195 bits (495), Expect = 3.790e-56
Identity = 100/153 (65.36%), Postives = 115/153 (75.16%), Query Frame = 1
Query:    1 GTPTKTVQLYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWPGSNPKDQEFFERARRDLPPESWNRIVAFGSTRRKRIACAADPQLAALLAAGTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLEHFF 459
            G   K + +YDTTLRDGTQ E +SV+V+ KL I  RL  FGM YIEGGWPGSNPKD EFF RAR +LP  +W R+VAFGSTRRK +    D Q+A LL +   CV IV K+WDLH+D ILEV REENLAMV++SVA LKAA REVML LEHFF
Sbjct:   75 GLSAKHLDIYDTTLRDGTQGESVSVTVDGKLAIAKRLGEFGMAYIEGGWPGSNPKDAEFFARARAELPLSTWRRVVAFGSTRRKFLPVEQDKQIAMLLESEAGCVCIVGKSWDLHIDEILEVPREENLAMVADSVAHLKAAGREVMLDLEHFF 227          
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Match: L1JY85_GUITC ((R)-citramalate synthase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JY85_GUITC)

HSP 1 Score: 189 bits (480), Expect = 1.540e-54
Identity = 90/147 (61.22%), Postives = 116/147 (78.91%), Query Frame = 1
Query:   19 VQLYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWPGSNPKDQEFFERARRDLPPESWNRIVAFGSTRRKRIACAADPQLAALLAAGTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLEHFF 459
            V+ YDTTLRDG Q EGIS+S +DKL+I +RL  FG+ YIEGGWPGSNPKD EFFERA+ +LPP +W+++ AFGSTR K +    D Q+  L+ +G R VT+V K+WDLHVD++LE SREENLAM+ ++V++LK+  REVML  EHFF
Sbjct:   23 VRYYDTTLRDGAQGEGISLSCDDKLRIASRLHRFGVDYIEGGWPGSNPKDAEFFERAKVELPPAAWDKVAAFGSTRYKNVKVEDDKQVKMLVDSGARVVTLVGKSWDLHVDQVLETSREENLAMIFDTVSYLKSLGREVMLDAEHFF 169          
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Match: A0A7S0F219_9CRYP ((R)-citramalate synthase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F219_9CRYP)

HSP 1 Score: 187 bits (476), Expect = 2.890e-54
Identity = 89/147 (60.54%), Postives = 115/147 (78.23%), Query Frame = 1
Query:   19 VQLYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWPGSNPKDQEFFERARRDLPPESWNRIVAFGSTRRKRIACAADPQLAALLAAGTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLEHFF 459
            V+ YDTTLRDG Q EGIS+S +DKL+I  RL  FG+ YIEGGWPGSNPKD EFFERA+ +LPP +W+++ AFGSTR K +    D Q+  L+ +G R VT+V K+WDLHVD++LE SREENLAM+ ++V++LK+  REVML  EHF+
Sbjct:  116 VRYYDTTLRDGAQGEGISLSCDDKLRIAARLHRFGVDYIEGGWPGSNPKDAEFFERAKVELPPAAWDKVAAFGSTRYKNVKVEDDKQVKMLVDSGARVVTLVGKSWDLHVDQVLETSREENLAMIFDTVSYLKSLGREVMLDAEHFY 262          
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Match: A0A7S4L4M6_GUITH ((R)-citramalate synthase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L4M6_GUITH)

HSP 1 Score: 189 bits (480), Expect = 9.700e-54
Identity = 90/147 (61.22%), Postives = 116/147 (78.91%), Query Frame = 1
Query:   19 VQLYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWPGSNPKDQEFFERARRDLPPESWNRIVAFGSTRRKRIACAADPQLAALLAAGTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLEHFF 459
            V+ YDTTLRDG Q EGIS+S +DKL+I +RL  FG+ YIEGGWPGSNPKD EFFERA+ +LPP +W+++ AFGSTR K +    D Q+  L+ +G R VT+V K+WDLHVD++LE SREENLAM+ ++V++LK+  REVML  EHFF
Sbjct:  111 VRYYDTTLRDGAQGEGISLSCDDKLRIASRLHRFGVDYIEGGWPGSNPKDAEFFERAKVELPPAAWDKVAAFGSTRYKNVKVEDDKQVKMLVDSGARVVTLVGKSWDLHVDQVLETSREENLAMIFDTVSYLKSLGREVMLDAEHFF 257          
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Match: A0A7S1HAV1_HEMAN ((R)-citramalate synthase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HAV1_HEMAN)

HSP 1 Score: 178 bits (451), Expect = 5.070e-53
Identity = 86/145 (59.31%), Postives = 107/145 (73.79%), Query Frame = 1
Query:   25 LYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWPGSNPKDQEFFERARRDLPPESWNRIVAFGSTRRKRIACAADPQLAALLAAGTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLEHFF 459
             YDTTLRDG Q EG+S+S +DKL+I  RL SFG HYIEGGWPGSNPKD EFF RA+ +LPP +W ++ AFGSTR K      D Q+  L+ +  R VT+V KAWDLHVD +LE +REEN+AM+ ++V +LK   REVML  EH+F
Sbjct:   19 FYDTTLRDGAQGEGMSLSCDDKLRIAARLHSFGAHYIEGGWPGSNPKDAEFFRRAKEELPPAAWAKVAAFGSTRYKGKKVEEDAQVQMLVDSDARVVTLVGKAWDLHVDVVLETTREENVAMIRDTVKYLKDMGREVMLDAEHYF 163          
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Match: A0A7S2UWY3_9STRA ((R)-citramalate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWY3_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.370e-53
Identity = 92/146 (63.01%), Postives = 113/146 (77.40%), Query Frame = 1
Query:   19 VQLYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWPGSNPKDQEFFERARRDLPPESWNRIVAFGSTRRKRIACAADPQLAALLAAGTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLEHF 456
            V++YDTTLRDGTQ E ISVSV  KL+I  RL  FG+HYIEGGWPGSNPKD+EFFERA+ +L PE+  ++ AFGSTRRK    A D Q+AAL+ +G  C+ +V K+ D HVD+ILEV REENLAMV +S+ +LK   +EVML LEHF
Sbjct:   92 VEIYDTTLRDGTQAESISVSVEGKLRIAERLAEFGVHYIEGGWPGSNPKDKEFFERAKTELSPEARTKLTAFGSTRRKFKKAAEDSQIAALVDSGVDCICLVGKSSDFHVDKILEVPREENLAMVHDSIHYLKGLGKEVMLDLEHF 237          
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Match: A0A2V7MMB9_9BACT ((R)-citramalate synthase (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7MMB9_9BACT)

HSP 1 Score: 163 bits (412), Expect = 7.450e-48
Identity = 85/145 (58.62%), Postives = 104/145 (71.72%), Query Frame = 1
Query:   25 LYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWPGSNPKDQEFFERARRDLPPESWNRIVAFGSTRRKRIACAADPQLAALLAAGTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLEHFF 459
            LYDTTLRDGTQ EG+S+SV+DKLKI  RL   G+HY+EGGWPGSNPKD EFF R R++   ++  +I AFG TRR    C  DP L ALL A T  VT+V K+  LHV+R+LE SR+ENL M+SESV + +   REV+   EHFF
Sbjct:    3 LYDTTLRDGTQREGLSLSVDDKLKIARRLDELGIHYLEGGWPGSNPKDAEFFRRIRQEGLGQA--KIAAFGMTRRANGRCEDDPNLTALLEAETPVVTLVGKSSTLHVERVLETSRDENLRMISESVGYFRRRGREVIYDAEHFF 145          
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Match: A0A3M1EAS4_9CHLR ((R)-citramalate synthase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1EAS4_9CHLR)

HSP 1 Score: 170 bits (431), Expect = 1.100e-47
Identity = 87/148 (58.78%), Postives = 107/148 (72.30%), Query Frame = 1
Query:   16 TVQLYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWPGSNPKDQEFFERARRDLPPESWNRIVAFGSTRRKRIACAADPQLAALLAAGTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLEHFF 459
            T+ LYDTTLRDGTQ EGIS+S +DKLKI  RL  FG+HYIEGGWPGSNPKD EFFER +     ++  +I AFGSTR K   C  D  + AL+ A T  VT+V K+WDLHVD +LE  R+ENLAM+++SVA+ K   +EV+   EHFF
Sbjct:    3 TIYLYDTTLRDGTQREGISLSCDDKLKIARRLDEFGIHYIEGGWPGSNPKDAEFFERVKSLNLKQA--KIAAFGSTRYKNTPCEEDANIRALVEADTPVVTLVGKSWDLHVDVVLEADRDENLAMIADSVAYFKRMGKEVIYDAEHFF 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9921.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTV2_ECTSI1.280e-6876.51(R)-citramalate synthase n=1 Tax=Ectocarpus silicu... [more]
A0A836CCG4_9STRA1.590e-6670.99(R)-citramalate synthase n=1 Tax=Tribonema minus T... [more]
A0A6V1Q1T2_HETAK3.790e-5665.36(R)-citramalate synthase n=1 Tax=Heterosigma akash... [more]
L1JY85_GUITC1.540e-5461.22(R)-citramalate synthase n=1 Tax=Guillardia theta ... [more]
A0A7S0F219_9CRYP2.890e-5460.54(R)-citramalate synthase (Fragment) n=1 Tax=Hanusi... [more]
A0A7S4L4M6_GUITH9.700e-5461.22(R)-citramalate synthase n=1 Tax=Guillardia theta ... [more]
A0A7S1HAV1_HEMAN5.070e-5359.31(R)-citramalate synthase (Fragment) n=1 Tax=Hemise... [more]
A0A7S2UWY3_9STRA6.370e-5363.01(R)-citramalate synthase n=1 Tax=Fibrocapsa japoni... [more]
A0A2V7MMB9_9BACT7.450e-4858.62(R)-citramalate synthase (Fragment) n=1 Tax=Gemmat... [more]
A0A3M1EAS4_9CHLR1.100e-4758.78(R)-citramalate synthase n=1 Tax=Caldilineae bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9921contigP-wetherbeei_contig9921:1..901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTV2
PFAMsHMGL-like,LeuA_dimer
Model size459
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00470,RC02754
KEGG koko:K01649
KEGG ReactionR01213
KEGG Pathwayko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG ModuleM00432
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.1e-69
EggNOG OGsCOG0119@1|root,KOG2367@2759|Eukaryota
EC2.3.3.13
DescriptionBelongs to the alpha-IPM synthase homocitrate synthase family
Cds size459
COG categoryE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.1171489-CDS-P-wetherbeei_contig9921:0..271683187117.1171489-CDS-P-wetherbeei_contig9921:0..27Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9921 1..27 -
1683187117.1294-CDS-P-wetherbeei_contig9921:195..2811683187117.1294-CDS-P-wetherbeei_contig9921:195..281Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9921 196..281 -
1683187117.1429956-CDS-P-wetherbeei_contig9921:555..9011683187117.1429956-CDS-P-wetherbeei_contig9921:555..901Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9921 556..901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9921.1.1prot_P-wetherbeei_contig9921.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9921 1..901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9921.1.1

>prot_P-wetherbeei_contig9921.1.1 ID=prot_P-wetherbeei_contig9921.1.1|Name=mRNA_P-wetherbeei_contig9921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
GTPTKTVQLYDTTLRDGTQMEGISVSVNDKLKIMTRLLSFGMHYIEGGWP
GSNPKDQEFFERARRDLPPESWNRIVAFGSTRRKRIACAADPQLAALLAA
GTRCVTIVAKAWDLHVDRILEVSREENLAMVSESVAFLKAADREVMLYLE
HFF
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mRNA from alignment at P-wetherbeei_contig9921:1..901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9921.1.1 ID=mRNA_P-wetherbeei_contig9921.1.1|Name=mRNA_P-wetherbeei_contig9921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=901bp|location=Sequence derived from alignment at P-wetherbeei_contig9921:1..901- (Phaeothamnion wetherbeei SAG_119_79)
GGGACGCCGACCAAAACGGTGCAGCTCTACGACACGACGCTGCGGGACGG TACGCAGATGGAGGGCATCAGCGTCAGTGTGAACGACAAGCTAAAGATCA TGACACGGCTGCTCTCGTTTGGGATGCATTACATCGAAGGAGGATGGCCC GGAAGCAACCCGAAGGATCAGGAATTCTTCGAGCGTGCGCGGCGCGACCT CCCGCCAGAGTCGTGGAACCGCATCGTGGCGTTCGGGAGCACGCGCCGCA AGCGGATTGCCTGCGCCGCTGACCCCCAGCTGGCAGCGCTGCTGGCGGCC GGGACGCGCTGTGTCACGATCGTGGCGAAGGCGTGGGATTTGCACGGTGA GCATCTTTTGTTTGTCTGTTGGTGGAGCTGTCATTGTCCTTTTCTCTCTG TTGACAGACTGGGATTGAAGAGCGATCGGTGACCTGAGGACACCGTAGAG ATGAATTCTTCTTCTTGTGCAGGACGCTGAATTACATATTTCCTCCTGCA CAAGGATGATTCGGATGATAGTGTGGCGTTCATTCAAATCTTCCGGCATT TCTCTTCAACATCTTGCCGCTTTTCACCCACTTCACTTCCTCCTTCTACC ATGTCAAAACTGCGGTGCAGTGGACCGCATTTTGGAGGTGTCGCGCGAGG AGAACCTGGCGATGGTATCGGAGAGCGTCGCCTTTCTCAAGGCTGCCGAC CGTGAGGTGAATGTATGGAGGACTCAGCGTCTGCCGGCAGTAGGGATGTC AACGCCTTTGGCGGCTTGAAGATCATGTTCTGCCAACCGCTGGAACTGCT TCGATTCCCAAATCTCAGAACTCCCCCCGGAGCCTTTTCTTTTCCTTCCT TTTCTTTTTATCATCCCTTTACAGGTGATGCTGTACTTGGAGCACTTTTT T
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9921:1..901-

>mRNA_P-wetherbeei_contig9921.1.1 ID=mRNA_P-wetherbeei_contig9921.1.1|Name=mRNA_P-wetherbeei_contig9921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig9921:1..901- (Phaeothamnion wetherbeei SAG_119_79)
GGGACGCCGACCAAAACGGTGCAGCTCTACGACACGACGCTGCGGGACGG
TACGCAGATGGAGGGCATCAGCGTCAGTGTGAACGACAAGCTAAAGATCA
TGACACGGCTGCTCTCGTTTGGGATGCATTACATCGAAGGAGGATGGCCC
GGAAGCAACCCGAAGGATCAGGAATTCTTCGAGCGTGCGCGGCGCGACCT
CCCGCCAGAGTCGTGGAACCGCATCGTGGCGTTCGGGAGCACGCGCCGCA
AGCGGATTGCCTGCGCCGCTGACCCCCAGCTGGCAGCGCTGCTGGCGGCC
GGGACGCGCTGTGTCACGATCGTGGCGAAGGCGTGGGATTTGCACGTGGA
CCGCATTTTGGAGGTGTCGCGCGAGGAGAACCTGGCGATGGTATCGGAGA
GCGTCGCCTTTCTCAAGGCTGCCGACCGTGAGGTGATGCTGTACTTGGAG
CACTTTTTT
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