mRNA_P-wetherbeei_contig985.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig985.4.1
Unique NamemRNA_P-wetherbeei_contig985.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig985.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig985contigP-wetherbeei_contig985:6184..8145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1963
Hectar predicted targeting categoryother localisation
Exons1
Cds size1962
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.2158403-CDS-P-wetherbeei_contig985:6183..81451683187113.2158403-CDS-P-wetherbeei_contig985:6183..8145Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig985 6184..8145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig985.4.1prot_P-wetherbeei_contig985.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig985 6184..8145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig985.4.1

>prot_P-wetherbeei_contig985.4.1 ID=prot_P-wetherbeei_contig985.4.1|Name=mRNA_P-wetherbeei_contig985.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=654bp
PTSASAPPSPGASSLAAKAQDAVPIITAAKASVAVDARTPATAAMAATAA
VAATALAATVAAAAPRAEAKPVMPVAGVGAAAVGPSYAACQLSSSGCGAV
AEGNSAGHERSASAPAAAEGGSVGSAGKAQDNDGSAAVAVETKLTAKNTK
TVNPGDGDDAGDGIVGGSGGSNGSSGAIGPGAPPQQTANRDASEASGRRW
RLGKRSTSGEWGTAADKPVDTSPTRTLVRRNSVDSAVAAPMAFVTYAAAR
GAIVPLLPPPSPGLARAASFGWRDDLRARGGGGGGGGGGIASDVWVERPH
GSAGRPAAGKEATPRLPMQTASGGVDAVSLAIKDSGSRDKRGSQDENETA
GAADASGAVAVAAGAACWDAGTGEHPITAPSEGSSEWDGCDASCCRAGRA
GARCDSGETRPDGGRLSSGDGDWERNGACGRESGGDDRAGGDGGHGDGGY
DGCCCAHDGCHRGYDGGYSGAYGGAYGDGSDGAFVGCGGGGGGADGYRGA
EEERFLLRDLCLRLESEVAKLRNIVACQAGCLQSSPAVSAGLGLISGAGG
GYGAAAAAAAAAAAAAAAAATTAAQHAPRLSSLVIPEHRHVAWEAMSDDG
QGLLTWQRHAQFGGAGCGHNSGSAGGGGGFASFRPTAPPFIPEQFPASAS
EDGR
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mRNA from alignment at P-wetherbeei_contig985:6184..8145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig985.4.1 ID=mRNA_P-wetherbeei_contig985.4.1|Name=mRNA_P-wetherbeei_contig985.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1962bp|location=Sequence derived from alignment at P-wetherbeei_contig985:6184..8145+ (Phaeothamnion wetherbeei SAG_119_79)
CCGACATCTGCGTCAGCACCACCGTCGCCAGGCGCGTCTTCGCTGGCGGC
GAAGGCGCAGGATGCCGTCCCGATCATTACAGCGGCTAAGGCATCGGTGG
CGGTGGATGCACGTACGCCGGCAACAGCAGCGATGGCGGCGACGGCGGCG
GTTGCTGCGACGGCGTTGGCGGCGACAGTGGCGGCAGCAGCGCCACGAGC
AGAGGCCAAGCCAGTAATGCCGGTGGCCGGCGTCGGCGCCGCTGCCGTGG
GGCCATCATATGCTGCCTGTCAGCTTTCCAGCAGCGGCTGCGGCGCCGTT
GCGGAAGGAAACAGCGCCGGCCACGAGCGGTCCGCGAGCGCGCCTGCGGC
CGCGGAAGGAGGGAGCGTCGGCTCAGCAGGCAAGGCACAGGACAATGATG
GTTCAGCTGCTGTGGCTGTGGAGACCAAACTCACCGCGAAAAACACCAAA
ACTGTGAATCCTGGAGATGGCGACGACGCTGGCGACGGCATCGTCGGTGG
CAGCGGTGGCAGCAACGGCAGCAGCGGAGCCATCGGCCCGGGCGCCCCGC
CGCAGCAGACCGCTAACAGGGACGCCAGCGAAGCTTCAGGACGGCGCTGG
CGGCTCGGCAAGCGCTCCACGTCGGGGGAGTGGGGGACGGCGGCGGACAA
GCCGGTAGACACGTCGCCGACGCGGACTCTGGTCCGCCGCAACAGCGTCG
ACAGCGCGGTGGCAGCGCCTATGGCGTTCGTCACCTACGCGGCCGCCCGC
GGTGCAATCGTGCCGCTGCTCCCGCCTCCGTCACCCGGACTGGCTCGGGC
CGCCAGCTTTGGCTGGCGAGATGACCTAAGGGCGAGGGGTGGGGGCGGCG
GCGGCGGCGGCGGCGGTATTGCTTCCGACGTCTGGGTGGAAAGGCCACAC
GGTTCGGCCGGCCGGCCGGCAGCGGGCAAAGAGGCGACGCCGCGCCTGCC
CATGCAGACGGCGAGCGGCGGTGTCGATGCCGTCAGCCTTGCTATCAAGG
ACAGCGGCAGCCGTGACAAACGAGGCTCTCAGGACGAGAACGAGACTGCC
GGTGCCGCCGATGCTTCCGGTGCCGTCGCCGTGGCAGCCGGTGCGGCGTG
TTGGGATGCTGGGACCGGCGAACACCCGATTACTGCTCCGAGCGAGGGCA
GCAGCGAATGGGATGGCTGCGATGCCAGCTGCTGCCGCGCCGGCAGAGCT
GGCGCTCGCTGCGACAGCGGCGAAACTAGGCCCGATGGCGGCCGATTGAG
CAGCGGCGATGGCGACTGGGAGCGCAACGGCGCGTGCGGCCGGGAAAGCG
GCGGCGACGACCGCGCTGGCGGCGACGGCGGGCATGGGGACGGGGGATAT
GACGGGTGCTGCTGTGCGCATGACGGCTGCCATCGCGGTTATGATGGCGG
TTACAGCGGCGCTTACGGCGGCGCTTACGGCGACGGCAGTGACGGCGCAT
TTGTCGGGTGCGGCGGCGGCGGTGGCGGGGCAGACGGCTACCGCGGGGCG
GAGGAAGAGCGGTTCCTGTTGCGTGATCTCTGCTTGCGACTGGAATCGGA
AGTCGCAAAGCTCAGAAATATTGTCGCCTGCCAGGCTGGGTGCCTCCAGT
CGTCGCCGGCGGTCTCTGCGGGACTGGGACTCATTTCGGGCGCCGGAGGC
GGGTACGGGGCGGCTGCCGCAGCTGCGGCAGCGGCTGCGGCTGCTGCTGC
AGCGGCAGCCACGACGGCTGCTCAGCACGCGCCTCGATTGTCGTCGCTGG
TGATCCCGGAGCACCGCCACGTTGCGTGGGAAGCGATGAGCGACGACGGA
CAGGGGCTGCTGACCTGGCAACGTCACGCGCAGTTTGGCGGCGCCGGCTG
TGGGCACAATAGTGGCAGCGCTGGCGGCGGCGGCGGCTTTGCATCGTTCC
GGCCAACGGCGCCGCCGTTCATCCCTGAACAGTTCCCCGCTTCGGCGTCC
GAAGACGGGAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig985:6184..8145+

>mRNA_P-wetherbeei_contig985.4.1 ID=mRNA_P-wetherbeei_contig985.4.1|Name=mRNA_P-wetherbeei_contig985.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1962bp|location=Sequence derived from alignment at P-wetherbeei_contig985:6184..8145+ (Phaeothamnion wetherbeei SAG_119_79)
CCGACATCTGCGTCAGCACCACCGTCGCCAGGCGCGTCTTCGCTGGCGGC
GAAGGCGCAGGATGCCGTCCCGATCATTACAGCGGCTAAGGCATCGGTGG
CGGTGGATGCACGTACGCCGGCAACAGCAGCGATGGCGGCGACGGCGGCG
GTTGCTGCGACGGCGTTGGCGGCGACAGTGGCGGCAGCAGCGCCACGAGC
AGAGGCCAAGCCAGTAATGCCGGTGGCCGGCGTCGGCGCCGCTGCCGTGG
GGCCATCATATGCTGCCTGTCAGCTTTCCAGCAGCGGCTGCGGCGCCGTT
GCGGAAGGAAACAGCGCCGGCCACGAGCGGTCCGCGAGCGCGCCTGCGGC
CGCGGAAGGAGGGAGCGTCGGCTCAGCAGGCAAGGCACAGGACAATGATG
GTTCAGCTGCTGTGGCTGTGGAGACCAAACTCACCGCGAAAAACACCAAA
ACTGTGAATCCTGGAGATGGCGACGACGCTGGCGACGGCATCGTCGGTGG
CAGCGGTGGCAGCAACGGCAGCAGCGGAGCCATCGGCCCGGGCGCCCCGC
CGCAGCAGACCGCTAACAGGGACGCCAGCGAAGCTTCAGGACGGCGCTGG
CGGCTCGGCAAGCGCTCCACGTCGGGGGAGTGGGGGACGGCGGCGGACAA
GCCGGTAGACACGTCGCCGACGCGGACTCTGGTCCGCCGCAACAGCGTCG
ACAGCGCGGTGGCAGCGCCTATGGCGTTCGTCACCTACGCGGCCGCCCGC
GGTGCAATCGTGCCGCTGCTCCCGCCTCCGTCACCCGGACTGGCTCGGGC
CGCCAGCTTTGGCTGGCGAGATGACCTAAGGGCGAGGGGTGGGGGCGGCG
GCGGCGGCGGCGGCGGTATTGCTTCCGACGTCTGGGTGGAAAGGCCACAC
GGTTCGGCCGGCCGGCCGGCAGCGGGCAAAGAGGCGACGCCGCGCCTGCC
CATGCAGACGGCGAGCGGCGGTGTCGATGCCGTCAGCCTTGCTATCAAGG
ACAGCGGCAGCCGTGACAAACGAGGCTCTCAGGACGAGAACGAGACTGCC
GGTGCCGCCGATGCTTCCGGTGCCGTCGCCGTGGCAGCCGGTGCGGCGTG
TTGGGATGCTGGGACCGGCGAACACCCGATTACTGCTCCGAGCGAGGGCA
GCAGCGAATGGGATGGCTGCGATGCCAGCTGCTGCCGCGCCGGCAGAGCT
GGCGCTCGCTGCGACAGCGGCGAAACTAGGCCCGATGGCGGCCGATTGAG
CAGCGGCGATGGCGACTGGGAGCGCAACGGCGCGTGCGGCCGGGAAAGCG
GCGGCGACGACCGCGCTGGCGGCGACGGCGGGCATGGGGACGGGGGATAT
GACGGGTGCTGCTGTGCGCATGACGGCTGCCATCGCGGTTATGATGGCGG
TTACAGCGGCGCTTACGGCGGCGCTTACGGCGACGGCAGTGACGGCGCAT
TTGTCGGGTGCGGCGGCGGCGGTGGCGGGGCAGACGGCTACCGCGGGGCG
GAGGAAGAGCGGTTCCTGTTGCGTGATCTCTGCTTGCGACTGGAATCGGA
AGTCGCAAAGCTCAGAAATATTGTCGCCTGCCAGGCTGGGTGCCTCCAGT
CGTCGCCGGCGGTCTCTGCGGGACTGGGACTCATTTCGGGCGCCGGAGGC
GGGTACGGGGCGGCTGCCGCAGCTGCGGCAGCGGCTGCGGCTGCTGCTGC
AGCGGCAGCCACGACGGCTGCTCAGCACGCGCCTCGATTGTCGTCGCTGG
TGATCCCGGAGCACCGCCACGTTGCGTGGGAAGCGATGAGCGACGACGGA
CAGGGGCTGCTGACCTGGCAACGTCACGCGCAGTTTGGCGGCGCCGGCTG
TGGGCACAATAGTGGCAGCGCTGGCGGCGGCGGCGGCTTTGCATCGTTCC
GGCCAACGGCGCCGCCGTTCATCCCTGAACAGTTCCCCGCTTCGGCGTCC
GAAGACGGGAGA
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