mRNA_P-wetherbeei_contig8286.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8286.1.1
Unique NamemRNA_P-wetherbeei_contig8286.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8286.1.1 vs. uniprot
Match: A0A835YLB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB7_9STRA)

HSP 1 Score: 390 bits (1003), Expect = 4.510e-128
Identity = 202/306 (66.01%), Postives = 244/306 (79.74%), Query Frame = 1
Query:    1 MTVRQLFNFSASEAVLGEYLGKYTYRDATLGK--IIKVSGSFFITTHYFAFAGRKVVDVDHMELNRTFKDLMRHDEVITVRFEGKKGLLFTDQRLDKKMFEVKNAPERDELHLAVMARWKSEDEVTSKEMRKLLRRKMTRLSLGYLTQAERLTQQTIGRLMADMTEKDKKQLFAGSVPIGLNRNQA-------------------------RHAQNSLDSGKAMDRVVFQEIHSGEIFGFDSFLTGAPAYSSIVVESEKAVVRSCTKDQIMARLREDRRLAATFYRIAAVSIASRLAEISPLDIYL 837
            + VR+LFN SA+E +  E  G YT+RD T  K  IIK  G+F++TTH+ AFAG+K +D +HME+NR  KD+MRHDEVI++RFEGKKG+LFTD +LD+KMFE K   ER+  H  VM++W+SE+EVTSKEMRKLLRRKMTRLSLGYL QAERLTQQ+I  LMADM+E++KKQLFAGSVPIGLNRNQ                           HAQN+LDSG+AM+RVVFQEIHSG+IFGFDSFLTGAPAYSS+VV+SEK VVRSCTKDQIMARLREDR+L+A FY +AAVSIA+RL+E+SPLD++L
Sbjct:  464 LAVRRLFNLSAAEEIASEMKGSYTFRDVTDPKKRIIKAPGTFYVTTHFLAFAGKKFIDANHMEINRPVKDVMRHDEVISIRFEGKKGVLFTDIKLDRKMFEPKKPEERELFHRQVMSKWRSENEVTSKEMRKLLRRKMTRLSLGYLNQAERLTQQSIEGLMADMSEREKKQLFAGSVPIGLNRNQVVIGEHNFNDNLFLLCTGIVRVQRVQEHAQNALDSGRAMNRVVFQEIHSGQIFGFDSFLTGAPAYSSVVVDSEKCVVRSCTKDQIMARLREDRKLSAKFYSVAAVSIAARLSELSPLDLFL 769          
BLAST of mRNA_P-wetherbeei_contig8286.1.1 vs. uniprot
Match: A0A6H5KEB5_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB5_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 8.740e-121
Identity = 193/303 (63.70%), Postives = 230/303 (75.91%), Query Frame = 1
Query:   16 LFNFSASEAVLGEYLG-KYTYRDATLGKIIKVSGSFFITTHYFAFAGRKVVDVDHMELNRTFKDLMRHDEVITVRFEGK--KGLLFTDQRLDKKMFEVKNAPERDELHLAVMARWKSEDEVTSKEMRKLLRRKMTRLSLGYLTQAERLTQQTIGRLMADMTEKDKKQLFAGSVPIGLNRNQA-------------------------RHAQNSLDSGKAMDRVVFQEIHSGEIFGFDSFLTGAPAYSSIVVESEKAVV-RSCTKDQIMARLREDRRLAATFYRIAAVSIASRLAEISPLDIYL 837
            +F+FSA+E +LGE+   +YTY D    K +++ G+F+IT HYFAF G+K VD+ H+E+NR F+D+MRHDEVIT++   K  K L+FTD    +KM E K   ERD L+   ++RWKSEDEVTS+EMRK+LRRKMTRLSL +L QAE++TQ+ IG LM DM+E++KK LFAGSVPIGLNRNQ                           H  N LDSGKAMDRVVFQEIHSGEIFGFDSFLTG+PAYSSIVV+SEKAVV RSCTKDQI+ARLREDR+LAA FYRIAAVSIASRLAEISPLDIYL
Sbjct:    1 MFSFSAAETILGEFTKTRYTYFDQEEKKEVRIQGTFYITDHYFAFVGKKTVDLSHLEINRQFRDVMRHDEVITIKRHTKSTKALVFTDIGQGRKMLEAKTEAERDNLYAQCISRWKSEDEVTSREMRKVLRRKMTRLSLDHLNQAEKMTQKGIGALMTDMSEREKKTLFAGSVPIGLNRNQVVIGELNFNDNLYLLCTGIVRVQRVKEHVSNVLDSGKAMDRVVFQEIHSGEIFGFDSFLTGSPAYSSIVVDSEKAVVVRSCTKDQIVARLREDRKLAAKFYRIAAVSIASRLAEISPLDIYL 303          
BLAST of mRNA_P-wetherbeei_contig8286.1.1 vs. uniprot
Match: D8LM64_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM64_ECTSI)

HSP 1 Score: 372 bits (956), Expect = 2.930e-118
Identity = 196/280 (70.00%), Postives = 230/280 (82.14%), Query Frame = 1
Query:    7 VRQLFNFSASEAVLGEYLG-KYTYRDATLGKIIKVSGSFFITTHYFAFAGRKVVDVDHMELNRTFKDLMRHDEVITVRFEGK--KGLLFTDQRLDKKMFEVKNAPERDELHLAVMARWKSEDEVTSKEMRKLLRRKMTRLSLGYLTQAERLTQQTIGRLMADMTEKDKKQLFAGSVPIGLNRNQARHAQNSLDSGKAMDRVVFQEIHSGEIFGFDSFLTGAPAYSSIVVESEKAVVRSCTKDQIMARLREDRRLAATFYRIAAVSIASRLAEISPLDIYL 837
            VR +F+FSASE +LGE+   +YTY D    K +++ G+F+IT HYFAF G+K VD+ H+E+NR F+D+MRHDEVIT++   K  K L+FTD    +KM E K   ERD L+    +RWKSEDEVTS+EMRK+LRRKMTRLSL +L QAE +TQ+ IG LM DM+E++KK LFAGSVPIGLNRNQ  H  N LDSGKAMDRVVFQEIHSGEIFGFDSFLTG+PAYSSIVV+SEKAVVRSCTKDQI+ARLREDR+LAA FYRIAAVSIASRLAEISPLDIYL
Sbjct:  783 VRNMFSFSASETILGEFAKTRYTYFDQEEKKEVRIQGTFYITDHYFAFVGKKTVDLSHLEINRQFRDVMRHDEVITIKRHTKSTKALVFTDIGQGRKMLEAKTEAERDNLYAQCNSRWKSEDEVTSREMRKVLRRKMTRLSLDHLNQAETMTQKGIGALMTDMSEREKKTLFAGSVPIGLNRNQ-EHVSNVLDSGKAMDRVVFQEIHSGEIFGFDSFLTGSPAYSSIVVDSEKAVVRSCTKDQIVARLREDRKLAAKFYRIAAVSIASRLAEISPLDIYL 1061          
BLAST of mRNA_P-wetherbeei_contig8286.1.1 vs. uniprot
Match: A0A7S3UPK2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPK2_HETAK)

HSP 1 Score: 197 bits (500), Expect = 7.490e-55
Identity = 112/304 (36.84%), Postives = 181/304 (59.54%), Query Frame = 1
Query:    1 MTVRQLFNFSASEAVLGEYLGKY-TYRDAT-LGKIIKVSGSFFITTHYFAFAGRKVVDVDHMELNRTFKDLMRHDEVITVRFEGKKGLLFTDQRLDKKMFEVKNAPERDELHLAVMARWKSEDEVTSKEMRKLLRRKMTRLSLGYLTQAERLTQQTIGRLMADMTEKDKKQLFAGSVPIGLNRNQA-------------------------RHAQNSLDSGKAMDRVVFQEIHSGEIFGFDSFLTGAPAYSSIVVESEKAVVRSCTKDQIMARLREDRRLAATFYRIAAVSIASRLAEISPLDI 831
            +T++ +F FS +E +  E+  ++ TY     +   +++ G+ ++T HY AF G        +  +   K ++  +E++ ++ E ++ +L  DQ L+KK+  +K +  R+E+   +M +W+ ED  T  + R LLRR++T L+   L   E   + T   ++++M+EKDK+ LF G++PI + RNQ                           H      +G+A ++VVF EI++GE+FGFDSFLTG  + SS +V+SEKA++R CTK QIM RL+ED+RLA+ FYR+AAVS+A RLAEISPLD+
Sbjct:  353 VTIQDIFGFSVTEELHKEFASEFFTYEKRNNIRTELRLKGTLYLTDHYVAFFGGPA----KLMSSTKHKVVIPFEEIVFLKNEKQRAILVCDQMLEKKLIVLKTSEAREEVMRFLMKKWRREDMETGAQARALLRRRITMLTNNQLEFVESSIKGTAHSVLSEMSEKDKRGLFMGTIPIAMQRNQVVIQEDMGNSTLYLLQAGVVRIQRLREHVGGETGTGRAAEKVVFHEINAGEMFGFDSFLTGESSSSSYLVDSEKAIIRCCTKQQIMERLKEDKRLASKFYRVAAVSLALRLAEISPLDV 652          
BLAST of mRNA_P-wetherbeei_contig8286.1.1 vs. uniprot
Match: A0A7S2XW70_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW70_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.390e-13
Identity = 59/187 (31.55%), Postives = 99/187 (52.94%), Query Frame = 1
Query:    4 TVRQLFNFSASEAVLGEYLGKYTYRDATLGKIIKVSGSFFITTHYFAFAGRKV--VDVDHMELNRTFKDLMRHDEVIT-VRFEGKKGLLFTDQRLDKKMFEVKNAPERDELHLAVMARWK--SEDEVTSKEMRKLLRRKMTRLSLGYLTQAERLTQQTIGRLMADMTEKDKKQLFAGSVPIGLNRNQ 549
            TV  LFNF  +E ++ E            G++  V G+ ++T HY AF G +     +D M+    F+     DE++  V+F+ K  + + DQ  +KK   +++  +RD+L+ A++ RWK  +     +  +R  LRR++T L    L   +   +      + +MTE+DKK LFAG+VP+G+ RNQ
Sbjct:  543 TVHNLFNFDVTEGLIFESPNSKLSFLVDKGEVATVRGTVYLTDHYLAFYGHRHGRSGLDVMK-KFPFQIATALDEIVNMVKFKSK-VIKYVDQFFEKKEVVLRSEKDRDDLYAALVRRWKEGAARGNNAASLRAALRRRLTFLPDKALRYVDNEVKLLARNALGEMTERDKKLLFAGAVPVGMCRNQ 727          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8286.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YLB7_9STRA4.510e-12866.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KEB5_9PHAE8.740e-12163.70Cyclic nucleotide-binding domain-containing protei... [more]
D8LM64_ECTSI2.930e-11870.00Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3UPK2_HETAK7.490e-5536.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XW70_9STRA2.390e-1331.55Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8286contigP-wetherbeei_contig8286:677..2465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size840
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-18_002630.1
Cds size840
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187031.407414-CDS-P-wetherbeei_contig8286:676..9611683187031.407414-CDS-P-wetherbeei_contig8286:676..961Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8286 677..961 -
1683187031.4200056-CDS-P-wetherbeei_contig8286:1358..16161683187031.4200056-CDS-P-wetherbeei_contig8286:1358..1616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8286 1359..1616 -
1683187031.430133-CDS-P-wetherbeei_contig8286:1905..20431683187031.430133-CDS-P-wetherbeei_contig8286:1905..2043Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8286 1906..2043 -
1683187031.440606-CDS-P-wetherbeei_contig8286:2306..24651683187031.440606-CDS-P-wetherbeei_contig8286:2306..2465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8286 2307..2465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8286.1.1prot_P-wetherbeei_contig8286.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8286 677..2465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8286.1.1

>prot_P-wetherbeei_contig8286.1.1 ID=prot_P-wetherbeei_contig8286.1.1|Name=mRNA_P-wetherbeei_contig8286.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp
MTVRQLFNFSASEAVLGEYLGKYTYRDATLGKIIKVSGSFFITTHYFAFA
GRKVVDVDHMELNRTFKDLMRHDEVITVRFEGKKGLLFTDQRLDKKMFEV
KNAPERDELHLAVMARWKSEDEVTSKEMRKLLRRKMTRLSLGYLTQAERL
TQQTIGRLMADMTEKDKKQLFAGSVPIGLNRNQARHAQNSLDSGKAMDRV
VFQEIHSGEIFGFDSFLTGAPAYSSIVVESEKAVVRSCTKDQIMARLRED
RRLAATFYRIAAVSIASRLAEISPLDIYL*
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mRNA from alignment at P-wetherbeei_contig8286:677..2465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8286.1.1 ID=mRNA_P-wetherbeei_contig8286.1.1|Name=mRNA_P-wetherbeei_contig8286.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1789bp|location=Sequence derived from alignment at P-wetherbeei_contig8286:677..2465- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGTGCGTCAGCTGTTCAACTTCTCTGCGTCGGAGGCGGTGCTGGG TGAGTACCTCGGCAAGTACACATACCGCGACGCCACCCTCGGCAAGATCA TCAAGGTGTCGGGCTCCTTCTTCATCACCACCCACTACTTCGCCTTTGCC GGACGCAAGGTGAGGAGTACAGTAGTGTTGCGTCGTCGCTTCTTCTTCCT TTTTTTCGAATGTCCAATTGCTTGAAGAAGCACGATCCGCTGCATTTGCT GGCGATCCGCTGCATTTGCTGGCTGTGTAGCAGGGTCTTTCCCTTATCTT CACGCCGTCTATAATATCCGAGAGACGTGCTTACATTGGTTGGGGACGAG AAGCACGCGAACTGATACATTCTCGCTTGCACTCAAAACCGGGACGGACG TTAATTCCGTGATGACCACCAGGTGGTGGACGTGGACCACATGGAGCTGA ACCGGACGTTCAAGGACCTGATGCGCCACGACGAGGTCATCACGGTGCGC TTCGAGGGCAAGAAGGGCCTCCTCTTTACTGACCAGCGCCTGGATAAGAA GATGTTTGAGGTACGAGAAGTCTCTCAGCAACTCTTGTTCGTGATTGAAG GAAGAGTACTGAAATTGATGTCAACAGCAGAGTCCCTCCTCGCCGTCTGG AAGGCTCTCTTTCTCCTTCCTTTGCCTGCCTTTTACGTTTCTCCTTCCTT TGCCTGCCTTTTACGTTCGTCCAACTGTGTGTGGTCCAGATGTGAAAATG ATGAGCTGTTAGTCTATCGGAACTGCATCCAATCCCTAACTCGAATACAA TTCCAAAGCCCCAAATCCCCCCCAAAATCCCCACAACCACGATAATCAGG TGAAGAACGCTCCGGAGCGGGATGAGCTGCACCTGGCGGTGATGGCCCGC TGGAAGTCGGAAGACGAGGTCACCTCGAAGGAGATGCGCAAGCTGCTGCG CCGCAAGATGACGCGGCTGAGCCTCGGCTACCTGACGCAGGCGGAGCGGC TGACGCAGCAGACCATCGGCAGGCTCATGGCAGACATGACGGAGAAGGAC AAGAAGCAGCTCTTCGCCGGCTCCGTGCCCATCGGCCTCAACCGCAACCA GGCAAGAGTATACGGCAGGTTTCGGAAAAGGGTTGGCTGTTGAGGTTGCC CTTTTTGCTGTCCAGCCGCGCAAGATTGTGGATAGGATTGGACTTCCCTG TGGAAGCCTATGCAGGCTGTTTAAGGACTGATTCGGGAAAGAGTGACAGA ATGTGGTGCTGCTGCCGGCCAGCGGTACATCTAGTGTAGGGCGTGGTCTC GTCCAGTGAACATGGGAAGGCAGATGGAGCTTCGGGATAGCCTTTTGCTG ATTTCCCTCTCGTTTCCGTCCGCTCACCGGTGCTTGCATCGCCCGGTCTT CTCGTTTCCTCATATCCAAACAGGTTGTGATTGGCGAATACAACTTCAAC GACAACCTCTACTTGCTCTGCACGGGCATCGTGCGCGTACAGCGCGTCCA GGAGCACGCTCAGAACTCGCTCGACTCGGGCAAGGCCATGGACCGCGTCG TCTTCCAGGAGATCCACTCGGGCGAGATCTTCGGCTTCGATTCGTTCCTG ACGGGCGCGCCGGCCTACAGCTCCATCGTTGTCGAGTCGGAGAAGGCCGT CGTGCGGAGCTGTACCAAGGACCAGATCATGGCGCGGCTGCGGGAGGACC GGCGGCTGGCAGCGACGTTCTATCGGATCGCTGCCGTCAGCATCGCGTCG CGGCTCGCCGAGATCAGTCCGCTCGACATCTATCTCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8286:677..2465-

>mRNA_P-wetherbeei_contig8286.1.1 ID=mRNA_P-wetherbeei_contig8286.1.1|Name=mRNA_P-wetherbeei_contig8286.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig8286:677..2465- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGTGCGTCAGCTGTTCAACTTCTCTGCGTCGGAGGCGGTGCTGGG
TGAGTACCTCGGCAAGTACACATACCGCGACGCCACCCTCGGCAAGATCA
TCAAGGTGTCGGGCTCCTTCTTCATCACCACCCACTACTTCGCCTTTGCC
GGACGCAAGGTGGTGGACGTGGACCACATGGAGCTGAACCGGACGTTCAA
GGACCTGATGCGCCACGACGAGGTCATCACGGTGCGCTTCGAGGGCAAGA
AGGGCCTCCTCTTTACTGACCAGCGCCTGGATAAGAAGATGTTTGAGGTG
AAGAACGCTCCGGAGCGGGATGAGCTGCACCTGGCGGTGATGGCCCGCTG
GAAGTCGGAAGACGAGGTCACCTCGAAGGAGATGCGCAAGCTGCTGCGCC
GCAAGATGACGCGGCTGAGCCTCGGCTACCTGACGCAGGCGGAGCGGCTG
ACGCAGCAGACCATCGGCAGGCTCATGGCAGACATGACGGAGAAGGACAA
GAAGCAGCTCTTCGCCGGCTCCGTGCCCATCGGCCTCAACCGCAACCAGG
CAAGACACGCTCAGAACTCGCTCGACTCGGGCAAGGCCATGGACCGCGTC
GTCTTCCAGGAGATCCACTCGGGCGAGATCTTCGGCTTCGATTCGTTCCT
GACGGGCGCGCCGGCCTACAGCTCCATCGTTGTCGAGTCGGAGAAGGCCG
TCGTGCGGAGCTGTACCAAGGACCAGATCATGGCGCGGCTGCGGGAGGAC
CGGCGGCTGGCAGCGACGTTCTATCGGATCGCTGCCGTCAGCATCGCGTC
GCGGCTCGCCGAGATCAGTCCGCTCGACATCTATCTCTAA
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