mRNA_P-wetherbeei_contig8056.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8056.1.1
Unique NamemRNA_P-wetherbeei_contig8056.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Match: A0A3G8GR03_9BURK (Uncharacterized protein n=1 Tax=Pigmentiphaga sp. H8 TaxID=2488560 RepID=A0A3G8GR03_9BURK)

HSP 1 Score: 177 bits (448), Expect = 1.070e-53
Identity = 90/168 (53.57%), Postives = 116/168 (69.05%), Query Frame = 1
Query:    4 MRDPTPETSPLKRARLAPPASLDGKTVALFDIGKTRTKEFLDRVELRLREKNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*GSCTSCSLHDLMNLDSRGIPGVNIVTTGFTDAVAAHSTALGFEPAVVFVPHPIQNRTAEELDRLADVAVEEAIKKLTSA 507
            +RDPTPE + L R R APPASL+GKTVAL DIGK R  EF+DR+E       +AT R  KPTN + A   ++Q +    D+V+IALSD GSCTSCS HDL +LD RG+PGV+++TT F DA A    A+GFE A ++VPHP+QNRT  EL  LA+ + E  +  LT++
Sbjct:    6 LRDPTPELASLLRPRKAPPASLEGKTVALMDIGKMRGDEFIDRLEQLFASVGVATHRYKKPTNTRTAPVPMIQDIAQNCDLVVIALSDCGSCTSCSTHDLNDLDQRGLPGVSVLTTEFRDAFAKQCAAIGFEGASLYVPHPMQNRTTAELHGLAEESFESILASLTAS 173          
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Match: UPI00194E1B7E (hypothetical protein n=1 Tax=Elioraea rosea TaxID=2492390 RepID=UPI00194E1B7E)

HSP 1 Score: 161 bits (407), Expect = 1.830e-47
Identity = 85/158 (53.80%), Postives = 105/158 (66.46%), Query Frame = 1
Query:    4 MRDPTPETSPLKRARLAPPASLDGKTVALFDIGKTRTKEFLDRVELRLREKNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*GSCTSCSLHDLMNLDSRGIPGVNIVTTGFTDAVAAHSTALGFEPAVVFVPHPIQNRTAEELDRLADVAV 477
            +RDPT E S   R R+ PP SL G TVAL DIGK R  EF+DR+E  L E+ IAT R  KPTN + A  E LQ++       +IALSD GSCTSCS HDL +LD RGIPGV+++T  F +  AA   A+GF+ A V V HP+QNRT  EL  +A+VA+
Sbjct:    5 LRDPTAEISGALRRRVPPPTSLLGVTVALLDIGKMRGDEFIDRLEALLAERGIATRRFRKPTNTRTAPVETLQEIATTCGAAVIALSDCGSCTSCSTHDLNDLDRRGIPGVSVITETFVEPFAAQCRAIGFDGASVVVAHPVQNRTTAELHAMAEVAL 162          
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Match: A0A1Y2JEI0_BRAJP (Uncharacterized protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A1Y2JEI0_BRAJP)

HSP 1 Score: 159 bits (401), Expect = 1.950e-46
Identity = 77/164 (46.95%), Postives = 113/164 (68.90%), Query Frame = 1
Query:    7 RDPTPETSPLKRARLAPPASLDGKTVALFDIGKTRTKEFLDRVELRLREKNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*GSCTSCSLHDLMNLDSRGIPGVNIVTTGFTDAVAAHSTALGFEPAVVFVPHPIQNRTAEELDRLADVAVEEAIKKL 498
            RDPT E++   R R+AP  ++ GKT+AL DIGK R  EF+DR+E    E+ I T+R  KPTN ++A  E+++ + ++ D V+IALSD GSCTSCS HDL +LD +G+ GV+++TT F  A  +   ++G + A V+V HP+QNRT  EL R A+ AV+E ++ +
Sbjct:    8 RDPTAESASALRDRVAPLETVRGKTIALMDIGKMRGDEFIDRLEQLCAERGIKTLRYKKPTNTRVAPREMIKDIAEDCDAVIIALSDCGSCTSCSTHDLNDLDKKGLAGVSVLTTEFRQAFESQKASIGLDGAAVYVAHPLQNRTTAELHRWAEAAVDEILQMI 171          
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Match: A0A1H0B7V0_9BRAD (Uncharacterized protein n=1 Tax=Afipia sp. GAS231 TaxID=1882747 RepID=A0A1H0B7V0_9BRAD)

HSP 1 Score: 155 bits (393), Expect = 3.690e-45
Identity = 76/165 (46.06%), Postives = 112/165 (67.88%), Query Frame = 1
Query:    7 RDPTPETSPLKRARLAPPASLDGKTVALFDIGKTRTKEFLDRVELRLREKNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*GSCTSCSLHDLMNLDSRGIPGVNIVTTGFTDAVAAHSTALGFEPAVVFVPHPIQNRTAEELDRLADVAVEEAIKKLT 501
            RDPT ET+   R R+AP   + GKT+AL DIGK R  EF+DR+E    E+ I T R  KPTN ++A  E+++ + +  D V+IALSD GSCTSCS HDL +LD +G+ GV+++T+ F +A  +   ++G + A V+VPHP+QN+T  EL + A+ A+ E ++ +T
Sbjct:    8 RDPTGETASTLRERVAPLDKISGKTIALMDIGKMRGDEFIDRLEQLCTERGIKTRRYKKPTNTRVAPREMIKDIAENCDAVIIALSDCGSCTSCSTHDLNDLDKKGLAGVSVLTSEFQEAFDSQKGSIGLDAAAVYVPHPLQNKTTAELYQWAEGAIVEILQAIT 172          
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Match: F7QEP0_9BRAD (Selenoprotein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C TaxID=709797 RepID=F7QEP0_9BRAD)

HSP 1 Score: 155 bits (391), Expect = 6.380e-45
Identity = 79/164 (48.17%), Postives = 108/164 (65.85%), Query Frame = 1
Query:    7 RDPTPETSPLKRARLAPPASLDGKTVALFDIGKTRTKEFLDRVELRLREKNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*GSCTSCSLHDLMNLDSRGIPGVNIVTTGFTDAVAAHSTALGFEPAVVFVPHPIQNRTAEELDRLADVAVEEAIKKL 498
            RDPT ET+   R R A   +L  KT+AL DIGK R  EF+DR+E    E+ I T R  KPTN ++A  E+++ + D  D V+IALSD GSCTSCS HDL +LD R + GV+++TT F  A  +   ++G + A V+VPHP+QN+T  EL + AD AVEE ++ +
Sbjct:    8 RDPTAETASALRERAALLDTLKDKTIALMDIGKMRGDEFIDRLEQLCAERGIKTRRYKKPTNTRVAPREMIKDIADNCDAVIIALSDCGSCTSCSTHDLNDLDKRELAGVSVLTTEFQQAFESQKGSIGLDAAAVYVPHPLQNKTTAELHQWADAAVEEILQAI 171          
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Match: UPI001AEC73C0 (hypothetical protein n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=UPI001AEC73C0)

HSP 1 Score: 154 bits (390), Expect = 9.040e-45
Identity = 75/168 (44.64%), Postives = 108/168 (64.29%), Query Frame = 1
Query:    4 MRDPTPETSPLKRARLAPPASLDGKTVALFDIGKTRTKEFLDRVELRLREKNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*GSCTSCSLHDLMNLDSRGIPGVNIVTTGFTDAVAAHSTALGFEPAVVFVPHPIQNRTAEELDRLADVAVEEAIKKLTSA 507
            +RDPT E++   R R  P A+LDG TVAL DIGK R  EF+DR+E   RE+ +AT R  KPTN ++A  +++  +      V+IALSD GSCTSCS HDL + D RG+ GV+++T  F  A      A+G + A ++VPHP+QN+T +EL   A+ +++  +  + SA
Sbjct:    7 LRDPTAESASALRPRTPPLATLDGATVALMDIGKMRGDEFIDRIEQLCRERGVATRRYKKPTNTRVAPRDMIADIASTCSAVVIALSDCGSCTSCSTHDLNDFDKRGLAGVSVLTEEFRHAFEQQKAAIGLDAAAIYVPHPMQNKTTDELHAFAEQSIDRILAAICSA 174          
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Match: UPI001FBA50DB (hypothetical protein n=3 Tax=unclassified Methylobacterium TaxID=2615210 RepID=UPI001FBA50DB)

HSP 1 Score: 154 bits (389), Expect = 1.280e-44
Identity = 78/167 (46.71%), Postives = 109/167 (65.27%), Query Frame = 1
Query:    4 MRDPTPETSPLKRARLAPPASLDGKTVALFDIGKTRTKEFLDRVELRLREKNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*GSCTSCSLHDLMNLDSRGIPGVNIVTTGFTDAVAAHSTALGFEPAVVFVPHPIQNRTAEELDRLADVAVEEAIKKLTS 504
            +RDPT ET+   R R+ P  +L G+TVAL DIGK R  EF+DR+E+  RE+ I T R  KPTN ++A  E++  +      V+IALSD GSCTSCS HDL +LD RG+ GV+++TT F  A  +  + +G + A V+V HP+QN+T  EL   AD+A    +K +T+
Sbjct:    7 LRDPTAETASALRPRVEPLDTLQGRTVALMDIGKMRGDEFIDRLEVLCRERGITTRRYKKPTNTRVAPREMILDIAAHCQAVIIALSDCGSCTSCSTHDLNDLDKRGLTGVSVLTTEFAQAFESQRSTIGLDAASVYVSHPMQNKTTAELHLSADLAFAAILKAITA 173          
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Match: UPI0017C281C1 (Uncharacterized protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017C281C1)

HSP 1 Score: 152 bits (385), Expect = 5.160e-44
Identity = 76/166 (45.78%), Postives = 106/166 (63.86%), Query Frame = 1
Query:   10 DPTPETSPLKRARLAPPASLDGKTVALFDIGKTRTKEFLDRVELRLREKNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*GSCTSCSLHDLMNLDSRGIPGVNIVTTGFTDAVAAHSTALGFEPAVVFVPHPIQNRTAEELDRLADVAVEEAIKKLTSA 507
            DPT ET+   R R AP  +L G TVAL DIGK R  EF+DR+E   RE+ +AT R  KPTN ++A  E++  +      V+IALSD GSCTSCS HDL +LD RG+ GV+++T  F  A      A+GF+ A ++VPHP+QN+T  EL   A+ +++  +  + +A
Sbjct:    9 DPTAETASALRPRTAPLTTLAGSTVALMDIGKMRGDEFIDRLEQLCRERGVATRRYKKPTNTRVAPREMIADIAASCQAVIIALSDCGSCTSCSTHDLNDLDKRGLAGVSVLTEEFRHAFDQQKAAIGFDAAAIYVPHPMQNKTTAELHAFAEESIDRILAAICAA 174          
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Match: A0A661GMN2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661GMN2_9GAMM)

HSP 1 Score: 142 bits (358), Expect = 4.800e-40
Identity = 77/167 (46.11%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    4 MRDPTPETSPLKRARLAPPASLDGKTVALFDIGKTRTKEFLDRVELRLREKNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*GSCTSCSLHDLMNLDSRGIPGVNIVTTGFTDAVAAHSTALGFEPAVVFVPHPIQNRTAEELDRLADVAVEEAIKKLTS 504
            +RDPT ET+ + R R  PP SLD KTVAL DIGK R  EF+DR+E     + IAT R  KPTN + A  EI+Q +  + D+V+IALSD GS               GIPGVN++T  F  A     + +GF  A V+ PHP+QNRT E+L   AD   EE +  +TS
Sbjct:    6 LRDPTAETAEVNRPRKPPPQSLDDKTVALLDIGKMRGDEFVDRMEQLFAARGIATKRYKKPTNTRTAPVEIIQDIVSDVDIVVIALSDCGSXXXXXXXXXXXXXQLGIPGVNVLTEEFRHAFEQQCSKIGFGGASVYTPHPMQNRTTEQLHEFADSVFEEIVAAITS 172          
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Match: A0A7W6F861_9HYPH (Uncharacterized protein n=1 Tax=Methylobacterium brachythecii TaxID=1176177 RepID=A0A7W6F861_9HYPH)

HSP 1 Score: 130 bits (327), Expect = 1.080e-35
Identity = 61/137 (44.53%), Postives = 92/137 (67.15%), Query Frame = 1
Query:   91 FDIGKTRTKEFLDRVELRLREKNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*GSCTSCSLHDLMNLDSRGIPGVNIVTTGFTDAVAAHSTALGFEPAVVFVPHPIQNRTAEELDRLADVAVEEAIKKLT 501
             DIGK R  EF+DR+E    E+ I+T R  KPTN ++A  E++  + D    V+IALSD GSCTSCS HDL +LD +G+ GV+++TT F  A  +  +++G + A V+V HP+QN+T EEL R A+ A ++ ++ ++
Sbjct:    1 MDIGKMRGDEFIDRLEQLCSERGISTRRYKKPTNTRVAPREMINDIADNCQAVIIALSDCGSCTSCSTHDLNDLDKKGLAGVSVLTTEFEQAFESQKSSIGLDAASVYVEHPLQNKTTEELHRSAESAFDDILRAIS 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8056.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3G8GR03_9BURK1.070e-5353.57Uncharacterized protein n=1 Tax=Pigmentiphaga sp. ... [more]
UPI00194E1B7E1.830e-4753.80hypothetical protein n=1 Tax=Elioraea rosea TaxID=... [more]
A0A1Y2JEI0_BRAJP1.950e-4646.95Uncharacterized protein n=4 Tax=Bradyrhizobium Tax... [more]
A0A1H0B7V0_9BRAD3.690e-4546.06Uncharacterized protein n=1 Tax=Afipia sp. GAS231 ... [more]
F7QEP0_9BRAD6.380e-4548.17Selenoprotein n=1 Tax=Bradyrhizobiaceae bacterium ... [more]
UPI001AEC73C09.040e-4544.64hypothetical protein n=1 Tax=Rhodoplanes roseus Ta... [more]
UPI001FBA50DB1.280e-4446.71hypothetical protein n=3 Tax=unclassified Methylob... [more]
UPI0017C281C15.160e-4445.78Uncharacterized protein n=1 Tax=Rhodoplanes sp. Ta... [more]
A0A661GMN2_9GAMM4.800e-4046.11Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7W6F861_9HYPH1.080e-3544.53Uncharacterized protein n=1 Tax=Methylobacterium b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8056contigP-wetherbeei_contig8056:448..954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1205680.CAKO01000035_gene261
Model size507
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.31e-18
EggNOG OGs2E6FA@1|root,3312Q@2|Bacteria,1NCPQ@1224|Proteobacteria,2UKWD@28211|Alphaproteobacteria
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187017.6608295-UTR-P-wetherbeei_contig8056:447..4501683187017.6608295-UTR-P-wetherbeei_contig8056:447..450Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8056 448..450 +
1683187017.6913836-UTR-P-wetherbeei_contig8056:717..9541683187017.6913836-UTR-P-wetherbeei_contig8056:717..954Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8056 718..954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187017.680037-CDS-P-wetherbeei_contig8056:450..7171683187017.680037-CDS-P-wetherbeei_contig8056:450..717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8056 451..717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8056.1.1prot_P-wetherbeei_contig8056.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8056 451..717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8056.1.1

>prot_P-wetherbeei_contig8056.1.1 ID=prot_P-wetherbeei_contig8056.1.1|Name=mRNA_P-wetherbeei_contig8056.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
MRDPTPETSPLKRARLAPPASLDGKTVALFDIGKTRTKEFLDRVELRLRE
KNIATMRVGKPTNAKIATPEILQKVTDEADVVLIALSD*
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mRNA from alignment at P-wetherbeei_contig8056:448..954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8056.1.1 ID=mRNA_P-wetherbeei_contig8056.1.1|Name=mRNA_P-wetherbeei_contig8056.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig8056:448..954+ (Phaeothamnion wetherbeei SAG_119_79)
TGGATGCGCGACCCTACGCCCGAGACCTCGCCCCTCAAGCGCGCGCGCCT CGCGCCGCCCGCTTCGCTCGACGGCAAGACCGTGGCCCTGTTCGACATCG GCAAGACGCGCACCAAGGAATTCCTCGACCGCGTGGAGCTGCGCCTGCGC GAGAAGAACATCGCGACCATGCGGGTGGGCAAGCCTACCAACGCCAAGAT CGCCACCCCGGAGATCCTGCAGAAGGTCACCGACGAAGCCGACGTGGTGC TCATCGCGCTCTCGGACTGAGGATCCTGCACGTCGTGCAGTCTGCACGAC CTCATGAATCTCGATTCGCGCGGCATCCCCGGCGTGAACATCGTCACCAC TGGCTTCACCGACGCGGTGGCTGCGCATTCGACGGCGCTCGGCTTCGAGC CGGCCGTCGTGTTCGTTCCCCACCCGATACAGAACCGGACTGCGGAGGAA CTCGACCGGCTGGCGGACGTCGCGGTTGAGGAGGCGATTAAGAAGCTGAC GTCTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8056:448..954+

>mRNA_P-wetherbeei_contig8056.1.1 ID=mRNA_P-wetherbeei_contig8056.1.1|Name=mRNA_P-wetherbeei_contig8056.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig8056:448..954+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGACCCTACGCCCGAGACCTCGCCCCTCAAGCGCGCGCGCCTCGC
GCCGCCCGCTTCGCTCGACGGCAAGACCGTGGCCCTGTTCGACATCGGCA
AGACGCGCACCAAGGAATTCCTCGACCGCGTGGAGCTGCGCCTGCGCGAG
AAGAACATCGCGACCATGCGGGTGGGCAAGCCTACCAACGCCAAGATCGC
CACCCCGGAGATCCTGCAGAAGGTCACCGACGAAGCCGACGTGGTGCTCA
TCGCGCTCTCGGACTGA
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