mRNA_P-wetherbeei_contig798.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig798.1.1
Unique NamemRNA_P-wetherbeei_contig798.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Match: D7G378_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G378_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.820e-34
Identity = 63/118 (53.39%), Postives = 93/118 (78.81%), Query Frame = 3
Query:    3 IVPAKAGKMAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKRCVPSLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITHLAVSLMVENK 356
            IVPAKA KMA KSV ++T KL+N+K++F+RLDPD++ EALEPGLLA +++VV ++A + +P  W  +P  ++D+  +VL  LE VPIFMRSFM +V+ NI+DVLD+ H+ ++ +V+NK
Sbjct:  145 IVPAKAAKMAQKSVTLMTEKLINIKEVFSRLDPDEMCEALEPGLLAVVSRVVTEMAAKHMPGTWHFLPEASRDD--IVLKALEDVPIFMRSFMGEVKTNIDDVLDVHHMVITNLVKNK 260          
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Match: A0A7S2SNZ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNZ7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.260e-26
Identity = 52/119 (43.70%), Postives = 85/119 (71.43%), Query Frame = 3
Query:    3 IVPAKAGKMAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKRCVP-SLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITHLAVSLMVENK 356
            I+PAKAGKMA KSVD++T KL++V+++F+RLDP + ++ +E G+L  ++K+V ++A + +P  +W   P   Q+E   VL  L++ P F+ +FM D++DNIE   D+ H+ V+ MV+NK
Sbjct:   69 IIPAKAGKMAGKSVDLMTEKLIDVQEVFSRLDPLRFSKVMEAGMLDMMSKIVHEIAAKWLPPGVWARTPKSVQEET--VLKALDEAPRFLSTFMNDIKDNIETYFDLKHMVVTNMVKNK 185          
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Match: A0A7S2S4J1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S4J1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.850e-26
Identity = 51/118 (43.22%), Postives = 76/118 (64.41%), Query Frame = 3
Query:    3 IVPAKAGKMAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKRCVPSLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITHLAVSLMVENK 356
            I+PAKA KMA     M+TT+L+N K++F RLDP K  E +E GLL  +  VV++VA    P  W+++P + +DE  +V+      P F+ +FM DV+DN++D+LDI  + V   V+NK
Sbjct:   10 IIPAKAEKMAVICFKMMTTRLINTKELFMRLDPSKFAEIMEDGLLLVVDDVVNEVANEHFPKFWSTLPQEVKDE--IVVLTDSACPQFLTAFMLDVQDNVDDILDIKDMCVKACVKNK 125          
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Match: A0A7S2EBD3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBD3_TRICV)

HSP 1 Score: 107 bits (266), Expect = 6.390e-25
Identity = 54/118 (45.76%), Postives = 79/118 (66.95%), Query Frame = 3
Query:    3 IVPAKAGKMAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKRCVPSLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITHLAVSLMVENK 356
            I+P KA KMA+   D++TTKLL+V++IF RLDP K  E +E GLL  +  +VD+VA+  +P  W  +P D +DE  +V+A       F+  FM D+R++++DVLDI ++ VS  VENK
Sbjct:   58 IIPTKAEKMASICFDLMTTKLLDVREIFHRLDPKKFGEVMEDGLLLLMDGIVDEVARTYMPKAWEKLPKDVKDE--IVIAMDRASGTFLEKFMYDMREHVDDVLDIKNMTVSACVENK 173          
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Match: A0A7S2LBA4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LBA4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.900e-25
Identity = 49/118 (41.53%), Postives = 83/118 (70.34%), Query Frame = 3
Query:    3 IVPAKAGKMAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKRCVPSLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITHLAVSLMVENK 356
            I+PAK  KMA K+VD++  KLLNVK+IF+RLD ++ +  ++ GL+  + +++ + A   +P +W  +P D +DE  VV A +E    F++ FM+D++++I+DVLDI H++V+  V+NK
Sbjct:   68 IIPAKTEKMARKAVDLMLEKLLNVKEIFSRLDAEEFSNVMDRGLILLIDRIISETAMEYMPRVWKGLPDDVKDEI-VVKASIESNQKFLKLFMQDMQEHIDDVLDIRHMSVTACVQNK 184          
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Match: B8C8A7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8A7_THAPS)

HSP 1 Score: 106 bits (264), Expect = 1.150e-24
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 3
Query:    3 IVPAKAGKMAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKRCVPSLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITHLAVSLMVENKV 359
            I+P KA KMA+   D++TTKLLN+K+IF RLDP K  E +E  LL  L  VV++VA   +PS+W+S+P + +DE  VV+    +   F+  FM +++ +I+D+LDI  + V+  VENKV
Sbjct:   62 IIPTKAEKMASVCFDLMTTKLLNLKEIFDRLDPKKFGEVMEDALLLMLDTVVNEVAMEYMPSMWSSLPKEVKDEVIVVMNIESET--FLVGFMEEIKAHIDDILDIKQMTVAACVENKV 178          
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Match: A0A7S0FMZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMZ7_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 6.350e-23
Identity = 42/118 (35.59%), Postives = 80/118 (67.80%), Query Frame = 3
Query:    3 IVPAKAGKMAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKRCVPSLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITHLAVSLMVENK 356
            I+P KA KMA+   +++TT+LLN+++IF RL+P+K +E +E G+L  + +++D+V    +P +W  +P D +DE  +V+   +    F+ +FM D++ +++D+LD+  + V+  V+NK
Sbjct:    8 IIPTKAEKMASICFELMTTRLLNIREIFNRLEPEKFSEVMEDGVLLLMDEILDEVGMEYMPDVWKKLPQDVRDE--MVVVAHQASDEFLTAFMTDMQKHVDDILDMKQMTVNACVQNK 123          
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Match: K0RT03_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RT03_THAOC)

HSP 1 Score: 100 bits (250), Expect = 2.600e-22
Identity = 50/118 (42.37%), Postives = 77/118 (65.25%), Query Frame = 3
Query:    3 IVPAKAGKMAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKRCVPSLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITHLAVSLMVENK 356
            I+P KA KMA+   D++TTKLLN+++IF RLDP + +E +E  LL  L  +VD VA + +P +W  +P D +DE  VV+    +   F+ SFM +V+++I+D+LDI  + V+  V  K
Sbjct:  367 IIPTKAEKMASVCFDLMTTKLLNLREIFDRLDPARFSEVMEDALLLMLDSIVDKVATKYMPRMWKELPQDVKDEVVVVMNI--ESDAFLVSFMEEVKEHIDDILDIKQMTVAACVREK 482          
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Match: A0A5B8MRM7_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MRM7_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 4.210e-22
Identity = 47/118 (39.83%), Postives = 79/118 (66.95%), Query Frame = 3
Query:    3 IVPAKAGKMAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKRCVPSLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITHLAVSLMVENK 356
            I+PAKAGKMA   V+++TTKLL+V+++F+R+DP ++   L      +L KVVD + +  +P++W+ +P  A DE  V L+  E +  ++   M ++++NIEDV+D+ HL VS+ +  K
Sbjct:   29 IIPAKAGKMAEIMVELMTTKLLDVREVFSRMDPKRMARILSEDARGSLYKVVDGLGQEQLPNVWSLVPRSALDECVVFLS--EDIDRYVEGLMEELKENIEDVMDLKHLVVSIALNEK 144          
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Match: A0A7S2LQF0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQF0_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.170e-21
Identity = 46/118 (38.98%), Postives = 79/118 (66.95%), Query Frame = 3
Query:    3 IVPAKAGKMAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKRCVPSLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITHLAVSLMVENK 356
            I+P K+ KMA+   D++TTKLLN+K+IF RLDP + +E +E  ++  L  +V++VA + +P++W+ +P   +DE  VV+    +   F+ +FM +V+++I+DVLDI  + V+  V  K
Sbjct:   29 IIPTKSEKMASICFDLMTTKLLNLKEIFDRLDPKRFSEVMEDAIMLMLDSIVEEVAMKYMPNVWSMLPKKVKDEIIVVMNIESET--FLTTFMEEVKEHIDDVLDIKQMTVAACVREK 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig798.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G378_ECTSI3.820e-3453.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SNZ7_9STRA1.260e-2643.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2S4J1_9STRA5.850e-2643.22Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2EBD3_TRICV6.390e-2545.76Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2LBA4_9STRA6.900e-2541.53Hypothetical protein (Fragment) n=2 Tax=Leptocylin... [more]
B8C8A7_THAPS1.150e-2445.38Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0FMZ7_9STRA6.350e-2335.59Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
K0RT03_THAOC2.600e-2242.37Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A5B8MRM7_9CHLO4.210e-2239.83Uncharacterized protein n=1 Tax=Chloropicon primus... [more]
A0A7S2LQF0_9STRA2.170e-2138.98Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig798contigP-wetherbeei_contig798:51..884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G378
PFAMsDUF445
Model size374
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.2e-30
EggNOG OGs28M2H@1|root,2QTJ6@2759|Eukaryota
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.0957854-CDS-P-wetherbeei_contig798:50..1941683187013.0957854-CDS-P-wetherbeei_contig798:50..194Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig798 51..194 -
1683187013.1168041-CDS-P-wetherbeei_contig798:409..5101683187013.1168041-CDS-P-wetherbeei_contig798:409..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig798 410..510 -
1683187013.1296935-CDS-P-wetherbeei_contig798:755..8581683187013.1296935-CDS-P-wetherbeei_contig798:755..858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig798 756..858 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.143017-UTR-P-wetherbeei_contig798:858..8841683187013.143017-UTR-P-wetherbeei_contig798:858..884Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig798 859..884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig798.1.1prot_P-wetherbeei_contig798.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig798 51..858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig798.1.1

>prot_P-wetherbeei_contig798.1.1 ID=prot_P-wetherbeei_contig798.1.1|Name=mRNA_P-wetherbeei_contig798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MAAKSVDMLTTKLLNVKQIFARLDPDKLTEALEPGLLATLAKVVDDVAKR
CVPSLWTSMPPDAQDEASVVLACLEQVPIFMRSFMRDVRDNIEDVLDITH
LAVSLMVENKVRAAS*
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mRNA from alignment at P-wetherbeei_contig798:51..884-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig798.1.1 ID=mRNA_P-wetherbeei_contig798.1.1|Name=mRNA_P-wetherbeei_contig798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=834bp|location=Sequence derived from alignment at P-wetherbeei_contig798:51..884- (Phaeothamnion wetherbeei SAG_119_79)
GGATCGTCCCTGCCAAGGCGGGAAAGATGGCGGCGAAGTCGGTAGATATG CTGACGACGAAGCTGCTCAATGTCAAGCAGATCTTCGCGCGGCTCGACCC GGACAAACTCACCGAGGCACTCGAGCCGGGTGAGGATCGGAGAACGACTG ACTGGCAAAGGTGCCTCTCTGGGATGGGCTGGCCTGTTTTCCATTGATTG AGTTTGCAATAATGATTGGGCACTGTTACCTTAGTTCAGTAACCCCGCCT GCGCTGTGAACAGAGGGACGCCAGCTCCTTCCGGTCATCCCTCTCTTACA CATTGATCTGAATGGGGCCTATTCTGGTTCACGTGTCTTCCTTTGGCATG GCGCGGCCGGTGCCGACACGACAGGGCTGCTGGCGACGCTGGCGAAAGTG GTGGACGACGTGGCCAAGCGCTGCGTGCCGAGCCTCTGGACCTCCATGCC GCCGGACGCCCAAGACGAGGCGAGTGTAAATGAATCAATGGTCAGATCGA ATCGTTTCGTTTCATTTCAGCCCCCCGCGAAGAGCGAAGAGCGGAGGGCA ATTTTTGCAACGCTTCAAGAGGAGAGGAGCAGCCCTGCGAACAAGCTCGC CCAACCCCTTAAACCGTGTCTTTAGTGTCTGATGGTAGTATGCTTGCTGC TAGTTTGTTCTTAGGTCTTTCCCCTCGTATCTTTCGGCAGGTCGTGCTGG CGTGCCTGGAGCAGGTGCCAATCTTCATGCGGTCCTTCATGCGCGACGTT CGTGACAACATCGAGGACGTGCTGGACATCACCCACCTTGCCGTCTCACT AATGGTGGAGAATAAGGTGAGGGCCGCTTCTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig798:51..884-

>mRNA_P-wetherbeei_contig798.1.1 ID=mRNA_P-wetherbeei_contig798.1.1|Name=mRNA_P-wetherbeei_contig798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig798:51..884- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGAAGTCGGTAGATATGCTGACGACGAAGCTGCTCAATGTCAA
GCAGATCTTCGCGCGGCTCGACCCGGACAAACTCACCGAGGCACTCGAGC
CGGGGCTGCTGGCGACGCTGGCGAAAGTGGTGGACGACGTGGCCAAGCGC
TGCGTGCCGAGCCTCTGGACCTCCATGCCGCCGGACGCCCAAGACGAGGC
GAGTGTCGTGCTGGCGTGCCTGGAGCAGGTGCCAATCTTCATGCGGTCCT
TCATGCGCGACGTTCGTGACAACATCGAGGACGTGCTGGACATCACCCAC
CTTGCCGTCTCACTAATGGTGGAGAATAAGGTGAGGGCCGCTTCTTAA
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