mRNA_P-wetherbeei_contig7927.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7927.1.1
Unique NamemRNA_P-wetherbeei_contig7927.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7927.1.1 vs. uniprot
Match: A0A3C2B022_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B022_9ACTN)

HSP 1 Score: 154 bits (390), Expect = 7.270e-45
Identity = 88/172 (51.16%), Postives = 114/172 (66.28%), Query Frame = 1
Query:    1 MRRTSKTWSEMDELTKPFLPDESVESATAVAIELRSRLVKVEQQALALYTAMASYAMIAQQSVDTARGEARADLDRSQATMIGLIEKLRTEVTARLDGAARRADTIAATAAVVPEDRLAALESQMSTMSTAMDAVRHENVELRRQLSGLVGEQMERDGWLVSSGSADSLTLR 516
            MRR+ K+W E D+LTKPFL   S E+ TAVA+ELR R+ KVEQQ LA YTA A+YA ++QQ V+ AR EARADLDR+Q+T+ GL++ LR+EV ARL     R D+ AA               +M  M  A++    EN+ LR+Q+  L+  QME DGWLVSSGSA  L+L+
Sbjct:    1 MRRSDKSWLEFDDLTKPFLAPGSDETVTAVAVELRDRMTKVEQQVLAQYTATAAYATLSQQGVEQARAEARADLDRAQSTVFGLLDTLRSEVNARLTALENRPDSRAAXXXXXXXXXXXXXXERMRAMIGALEGCVRENMLLRQQVDELMRRQMEHDGWLVSSGSASELSLQ 172          
BLAST of mRNA_P-wetherbeei_contig7927.1.1 vs. uniprot
Match: A0A7X9KL75_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KL75_9ACTN)

HSP 1 Score: 149 bits (375), Expect = 1.720e-42
Identity = 86/173 (49.71%), Postives = 114/173 (65.90%), Query Frame = 1
Query:    7 RTSKTWSEMDELTKPFLPDESVESATAVAIELRSRLVKVEQQALALYTAMASYAMIAQQSVDTARGEARADLDRSQATMIGLIEKLRTEVTARLDGAARRADTIAATAAVVPED---RLAALESQMSTMSTAMDAVRHENVELRRQLSGLVGEQMERDGWLVSSGSADSLTLR 516
            R   +W ++DE   PFL  +S E+A +VA ELR R+VK+EQQ LA YTA A+YA +A+Q V+ AR EARADLDRSQ+T+IGL+++LR E+  RLDG   R          VP D   RL A+E +M  +  A++   HEN+ LR+Q+  LV  QM  DGWLVS+G A  L+LR
Sbjct:   11 RADNSWMQLDEQATPFLAPDSGENAMSVATELRDRMVKIEQQVLAQYTATAAYATLAKQGVEEARSEARADLDRSQSTIIGLLDRLRVEIGNRLDGIDARTP---GGGGAVPTDAAARLTAMEERMHGVLHALEGCVHENMMLRQQIDELVQRQMHSDGWLVSNGGASELSLR 180          
BLAST of mRNA_P-wetherbeei_contig7927.1.1 vs. uniprot
Match: A0A6I3EY71_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3EY71_9ACTN)

HSP 1 Score: 137 bits (344), Expect = 8.110e-38
Identity = 81/179 (45.25%), Postives = 114/179 (63.69%), Query Frame = 1
Query:    1 MRRTSKTWSEMDELTKPFLPDESVESATAVAIELRSRLVKVEQQALALYTAMASYAMIAQQSVDTARGEARADLDRSQATMIGLIEKLRTEVTARLDG--AARRADTIAATAAVVP------EDRLAALESQMSTMSTAMDAVRHENVELRRQLSGLVGEQMERDGWLVSSGSADSLTL 513
            MRR+ K W E ++ T PFLP  S ++  +V  ELR R+ KVEQQ L+ YTA A+YA + QQ+V+ AR EARADLDRSQAT+IGL+++LR ++  RLD     R   +  A A V P        R++A+E Q++ ++  ++A  H+N  LR+Q+  L    M R+GWLVS   +D LTL
Sbjct:    1 MRRSEKNWMEYEQTTTPFLPPGSHDAVASVTTELRDRMAKVEQQVLSQYTATAAYATLGQQAVEQARAEARADLDRSQATIIGLLDRLRADLQQRLDALEVPRHLASSGAPAPVAPVAGGDLAGRISAMEEQLAALTGLLEATVHQNEHLRQQVDELQQRAMRREGWLVSGDPSD-LTL 178          
BLAST of mRNA_P-wetherbeei_contig7927.1.1 vs. uniprot
Match: A0A539E643_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E643_9ACTN)

HSP 1 Score: 116 bits (291), Expect = 6.310e-30
Identity = 71/170 (41.76%), Postives = 107/170 (62.94%), Query Frame = 1
Query:    4 RRTSKTWSEMDELTKPFLPDESVESATAVAIELRSRLVKVEQQALALYTAMASYAMIAQQSVDTARGEARADLDRSQATMIGLIEKLRTEVTARLDGAARRADTIAATAAVVPEDRLAALESQMSTMSTAMDAVRHENVELRRQLSGLVGEQMERDGWLVSSGSADSLTL 513
            R+   T   ++E T  FLPDE+ + +   A  LR R+ K+E Q +A YTAMA+YA IAQ++ D  + E+R+DLDRSQAT+IGLIE++R E    ++GAARRA   A +       RLAA+E +   ++ A+         L  Q++ L+ ++M RDGWLV++G+A  L++
Sbjct:    5 RQDDATMPFIEEATPDFLPDEAEQDSRLAAANLRERMAKLETQMMAQYTAMAAYASIAQRNSDMVQAESRSDLDRSQATVIGLIERVRRECADSIEGAARRAGGGADSDGA----RLAAIEQKFDGLTDALARSIEAQRLLGEQVTMLLDDKMHRDGWLVANGNATDLSM 170          
BLAST of mRNA_P-wetherbeei_contig7927.1.1 vs. uniprot
Match: A0A7K1BB36_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1BB36_9ACTN)

HSP 1 Score: 116 bits (290), Expect = 1.490e-29
Identity = 67/154 (43.51%), Postives = 97/154 (62.99%), Query Frame = 1
Query:   52 FLPDESVESATAVAIELRSRLVKVEQQALALYTAMASYAMIAQQSVDTARGEARADLDRSQATMIGLIEKLRTEVTARLDGAARRADTIAATAAVVPEDRLAALESQMSTMSTAMDAVRHENVELRRQLSGLVGEQMERDGWLVSSGSADSLTL 513
            FLPDE+ + +     +LR R+ K+E Q +A YTAMA+YA IAQ + + AR EAR DLDRSQ+T+IGL+E++R E    + G   R  +   + A     RLAALE +   ++ A++        L  Q++ L+ E+M+RDGWL + GSADSL+L
Sbjct:   40 FLPDEAAQESRLAGNDLRERVSKLETQMMAQYTAMAAYAQIAQNNTEAARAEARHDLDRSQSTVIGLVERVRRECADAIQGVQTRGGSGEGSDAA----RLAALEQRFDGLAAALERSIETQRALAEQVAALIEERMQRDGWLATDGSADSLSL 189          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7927.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3C2B022_9ACTN7.270e-4551.16Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7X9KL75_9ACTN1.720e-4249.71Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A6I3EY71_9ACTN8.110e-3845.25Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A539E643_9ACTN6.310e-3041.76Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7K1BB36_9ACTN1.490e-2943.51Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7927contigP-wetherbeei_contig7927:316..834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size519
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187009.477648-CDS-P-wetherbeei_contig7927:315..8341683187009.477648-CDS-P-wetherbeei_contig7927:315..834Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7927 316..834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7927.1.1prot_P-wetherbeei_contig7927.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7927 316..834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7927.1.1

>prot_P-wetherbeei_contig7927.1.1 ID=prot_P-wetherbeei_contig7927.1.1|Name=mRNA_P-wetherbeei_contig7927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
MRRTSKTWSEMDELTKPFLPDESVESATAVAIELRSRLVKVEQQALALYT
AMASYAMIAQQSVDTARGEARADLDRSQATMIGLIEKLRTEVTARLDGAA
RRADTIAATAAVVPEDRLAALESQMSTMSTAMDAVRHENVELRRQLSGLV
GEQMERDGWLVSSGSADSLTLR*
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mRNA from alignment at P-wetherbeei_contig7927:316..834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7927.1.1 ID=mRNA_P-wetherbeei_contig7927.1.1|Name=mRNA_P-wetherbeei_contig7927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig7927:316..834+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACGGACGAGCAAGACGTGGTCGGAGATGGACGAGCTGACCAAGCC GTTCCTTCCGGACGAATCCGTGGAGAGCGCGACCGCGGTCGCGATCGAGC TCCGCAGCCGTTTGGTGAAGGTCGAGCAGCAGGCGTTGGCCCTCTACACG GCGATGGCGTCGTACGCGATGATCGCCCAGCAGAGCGTCGACACGGCGCG AGGCGAGGCCCGCGCCGACCTCGATCGTTCGCAGGCGACGATGATCGGAC TGATCGAGAAGCTGCGCACCGAGGTGACCGCACGACTCGACGGAGCGGCA CGGCGCGCCGACACGATCGCCGCGACTGCAGCGGTCGTGCCCGAGGATCG GCTGGCCGCGCTCGAGTCGCAGATGTCGACGATGTCGACGGCGATGGACG CGGTTCGTCACGAGAACGTCGAGCTGCGCCGTCAGCTGAGCGGGCTCGTC GGCGAGCAGATGGAACGCGACGGCTGGCTGGTGAGCAGCGGCAGCGCCGA CTCGCTCACGCTGCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7927:316..834+

>mRNA_P-wetherbeei_contig7927.1.1 ID=mRNA_P-wetherbeei_contig7927.1.1|Name=mRNA_P-wetherbeei_contig7927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig7927:316..834+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACGGACGAGCAAGACGTGGTCGGAGATGGACGAGCTGACCAAGCC
GTTCCTTCCGGACGAATCCGTGGAGAGCGCGACCGCGGTCGCGATCGAGC
TCCGCAGCCGTTTGGTGAAGGTCGAGCAGCAGGCGTTGGCCCTCTACACG
GCGATGGCGTCGTACGCGATGATCGCCCAGCAGAGCGTCGACACGGCGCG
AGGCGAGGCCCGCGCCGACCTCGATCGTTCGCAGGCGACGATGATCGGAC
TGATCGAGAAGCTGCGCACCGAGGTGACCGCACGACTCGACGGAGCGGCA
CGGCGCGCCGACACGATCGCCGCGACTGCAGCGGTCGTGCCCGAGGATCG
GCTGGCCGCGCTCGAGTCGCAGATGTCGACGATGTCGACGGCGATGGACG
CGGTTCGTCACGAGAACGTCGAGCTGCGCCGTCAGCTGAGCGGGCTCGTC
GGCGAGCAGATGGAACGCGACGGCTGGCTGGTGAGCAGCGGCAGCGCCGA
CTCGCTCACGCTGCGCTGA
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