mRNA_P-wetherbeei_contig7890.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7890.1.2
Unique NamemRNA_P-wetherbeei_contig7890.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7890.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7890contigP-wetherbeei_contig7890:328..2730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1273
Hectar predicted targeting categoryother localisation
Exons5
Cds size768
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7890.1.2prot_P-wetherbeei_contig7890.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7890 824..2721 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.0750823-UTR-P-wetherbeei_contig7890:327..8231683187007.0750823-UTR-P-wetherbeei_contig7890:327..823Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7890 328..823 -
1683187007.136395-UTR-P-wetherbeei_contig7890:2721..27301683187007.136395-UTR-P-wetherbeei_contig7890:2721..2730Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7890 2722..2730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.0838695-CDS-P-wetherbeei_contig7890:823..9611683187007.0838695-CDS-P-wetherbeei_contig7890:823..961Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7890 824..961 -
1683187007.092121-CDS-P-wetherbeei_contig7890:1233..14701683187007.092121-CDS-P-wetherbeei_contig7890:1233..1470Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7890 1234..1470 -
1683187007.101562-CDS-P-wetherbeei_contig7890:1666..17351683187007.101562-CDS-P-wetherbeei_contig7890:1666..1735Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7890 1667..1735 -
1683187007.1116433-CDS-P-wetherbeei_contig7890:2064..22171683187007.1116433-CDS-P-wetherbeei_contig7890:2064..2217Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7890 2065..2217 -
1683187007.1272008-CDS-P-wetherbeei_contig7890:2550..27211683187007.1272008-CDS-P-wetherbeei_contig7890:2550..2721Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7890 2551..2721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7890.1.2

>prot_P-wetherbeei_contig7890.1.2 ID=prot_P-wetherbeei_contig7890.1.2|Name=mRNA_P-wetherbeei_contig7890.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=256bp
MVLKLPSLLWYTVDGNMKPKVEYLRGFLGLSAETAGRLLVKTPQLFSYSI
DGGIRPKVAYFVEELGFSQEEVGAIVARSPQILGYSVEENVKPKVLFLQR
ALRASTNQVREMLLKYPNLLNLSVSNNIEPKVKFFQEVLGGSVEEVRAAV
LATPNLLGYSMERRIVPRVLALRGVGVAPLSFAEHHWHVTSYTDKRFRDW
LRRKISEIHKDEPEQEQRALMKRAVELMNLMATETTLTAAVGNNDAVVAA
MAGRQ*
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mRNA from alignment at P-wetherbeei_contig7890:328..2730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7890.1.2 ID=mRNA_P-wetherbeei_contig7890.1.2|Name=mRNA_P-wetherbeei_contig7890.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2403bp|location=Sequence derived from alignment at P-wetherbeei_contig7890:328..2730- (Phaeothamnion wetherbeei SAG_119_79)
CTGCGGGACATGGTGTTGAAGCTACCAAGCCTGCTGTGGTACACAGTGGA
TGGCAACATGAAGCCCAAGGTCGAGTACCTGCGGGGCTTCCTCGGCCTTA
GTGCCGAAACGGCCGGCCGGCTACTCGTCAAGACGCCGCAGCTCTTCTCT
TACAGCATCGATGGCGGCATCCGACCCAAGGTGGGGCAGTCAGGCTATCG
GTTTGTTGGTCGGTTCGGCGTTTGGCTGATTGGAAGATGTATGGAAAAGC
AAGGTTGACTCGGTTGGGTTAAGGATCCGACAGAGGAGCGGTGGCACGGA
GGAGAGGCAGAGCGAGAAGGAGCGCCGGCCCGATCTCTGCGTGCCGTCGA
CAACAGCAGTGACCTATTGCCGCCGCTACTGCCGCCGCTGCCGCCGCCCC
CGCACCGCCCGCACTTCCTCAGTGTGCCCCTCTTCCCTCTGACATCGCCT
TGCCTCTTCTGCCGCCACTATTGCTGCTGCCACCACCACCACCGATGTCT
CCGCGGCCGCCAGGTGGCGTACTTCGTTGAGGAGCTGGGCTTCAGCCAGG
AGGAGGTGGGGGCCATTGTGGCGCGGTCGCCGCAGATCCTTGGCTATTCG
GTGGAGGAGAACGTCAAGCCCAAGGTGCTCTTCCTGCAGAGGGCGCTGCG
GGCCAGCACCAACCAGGTCTGTCCACCAATTAGTTTATCAATAGGCAATC
ATTTAGGCGGCCAAGGTAACGGGGTTCCGTCAGGCCGTCGATCAGTCACT
TAGTCAGTCAGTCAGGGCTTGGAGTCCGTTCCGCGTCCCGTGACTATCTT
TGTGGTTTCTGTCGCAGAGTCGGCGAAAAGGCCTCTCGTCCGTGGGGAGG
CGCCTGTAATGTTTTTCAAATGTGTGATTACTGCGCTTGGCAGCAGGCTG
CCGTTGCCGCTGCAGGTTCTCTTTGCCGGCCTCCAACCCCTCATCCCTCT
TAACCATTGCTCTCTTGGCGTCGTGTCTGCGCTTGTTCTTGATAGGTTCG
CGAGATGCTCCTCAAGTACCCGAATCTGCTCAATCTCAGCGTCAGCAACA
ACATTGAACCTAAGGTGAGGTACAACGTGGCGGGTAAGCAACCGGCATGG
CGACACATTTGTCGCAGGGAGAATTGAGGGAATTGGCGAAGCGCACGCGT
ATTGACGCATCCAGAATTCATGCTGACGTCGACCGTTCGCCTAATTGTTT
CGTTTGATCATTTTGTCGAATTATTTCGTCCCCAAACGTTTCGCATTATG
ATTTGTTCAGGTGAAGTTCTTCCAGGAGGTGCTAGGGGGCTCGGTGGAGG
AGGTGCGCGCCGCTGTCCTTGCCACGCCCAACCTGCTGGGCTACAGCATG
GAGCGCCGCATCGTGCCGCGCGTGCTTGCGCTGCGCGGCGTGGGTGTGGC
GCCGCTGTCGTTTGCTGAGCACCACTGGCACGTCACGTCGTACACGGACA
AGCGCTTCCGGGACTGGCTGCGCCGAAAAATCTCCGAGATACACAAGGTG
AGGCTTTCTGAGAGAAGATATGGGAGAACACGAGCCATTCTAATTATTGT
ATTTGTTCGCTTTTAACTGCAAAAAGATCCGCCAAGGCTCTGCCGCATGT
AGACGTTCAAACTTCTGTTCGAATTGGTATAACGCTTGTCGTGCGAAAGA
AGAGTCAGCTCTTTTGCGGCGTTTTCTAGAGATTGTGACATGCAGCCCCC
TTCCTTTCTGCCACCCTGCCTCTTTTGCGCTGCCTGCCGATCACCGGTGC
GGTCGTCACCCGCTTCCAGGACGAGCCAGAGCAGGAGCAGCGGGCGCTGA
TGAAGCGGGCGGTGGAGCTCATGAACCTCATGGCCACTGAGACGACGCTG
ACGGCCGCCGTCGGCAACAACGACGCCGTCGTGGCGGCGATGGCGGGCCG
CCAATGAGGCGGGCTCGCCCCCGACATCCGGCCAGCTTGTAAGCGCGTGG
TGGGTGGAGCAGGGAAGCGCAGTGGGACAGACTGGGCCAGTCGCAATGAT
TGGAGGTGGGGGCAAAGGATGAGGAGAAAGCGGGGTTTGTGAGGGAGGAG
AAATGAGATGTTCCTGGAAAGAAAACTAGCGAGAAAAATGCGCGTGCTTG
CTGGTAGTAGCGGCGTTAGAGATAGTTTTGTGATATGGTAACACGAAGCG
GCTCGGCTTTTCCGTAGCCGTGCGGGACGGGCAGCGGACGCGCCATGGCG
GCCGCCTGTTGTGCTTCATTGCGTCGTCCGGGGGAAAGCTTAGCATGCAG
GGATACCTTGCCAATGGTTTGTTGCGTATCCACGCGATGGGAGGGATGCC
AATAGGTAGGGAGAAGAAATTGATTCTGCACGGGCAGCGACAAGAGGACA
TTGCCAAGTGCCGTTTACTGTCACTCGGGATTTGGAGGGGGGAAGGCAGC
TGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7890:328..2730-

>mRNA_P-wetherbeei_contig7890.1.2 ID=mRNA_P-wetherbeei_contig7890.1.2|Name=mRNA_P-wetherbeei_contig7890.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig7890:328..2730- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTTGAAGCTACCAAGCCTGCTGTGGTACACAGTGGATGGCAACAT
GAAGCCCAAGGTCGAGTACCTGCGGGGCTTCCTCGGCCTTAGTGCCGAAA
CGGCCGGCCGGCTACTCGTCAAGACGCCGCAGCTCTTCTCTTACAGCATC
GATGGCGGCATCCGACCCAAGGTGGCGTACTTCGTTGAGGAGCTGGGCTT
CAGCCAGGAGGAGGTGGGGGCCATTGTGGCGCGGTCGCCGCAGATCCTTG
GCTATTCGGTGGAGGAGAACGTCAAGCCCAAGGTGCTCTTCCTGCAGAGG
GCGCTGCGGGCCAGCACCAACCAGGTTCGCGAGATGCTCCTCAAGTACCC
GAATCTGCTCAATCTCAGCGTCAGCAACAACATTGAACCTAAGGTGAAGT
TCTTCCAGGAGGTGCTAGGGGGCTCGGTGGAGGAGGTGCGCGCCGCTGTC
CTTGCCACGCCCAACCTGCTGGGCTACAGCATGGAGCGCCGCATCGTGCC
GCGCGTGCTTGCGCTGCGCGGCGTGGGTGTGGCGCCGCTGTCGTTTGCTG
AGCACCACTGGCACGTCACGTCGTACACGGACAAGCGCTTCCGGGACTGG
CTGCGCCGAAAAATCTCCGAGATACACAAGGACGAGCCAGAGCAGGAGCA
GCGGGCGCTGATGAAGCGGGCGGTGGAGCTCATGAACCTCATGGCCACTG
AGACGACGCTGACGGCCGCCGTCGGCAACAACGACGCCGTCGTGGCGGCG
ATGGCGGGCCGCCAATGA
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