mRNA_P-wetherbeei_contig787.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig787.1.1
Unique NamemRNA_P-wetherbeei_contig787.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Match: D8LHG6_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG6_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 6.990e-52
Identity = 102/213 (47.89%), Postives = 138/213 (64.79%), Query Frame = 1
Query:    1 SVVDAAMVARAGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCIDVDIFC---ELRKFSPQQPANVKNREARPSSPARRDAAATAAEGATANSDDPPQQGPVRFELTYPGCPEGQGFLMEVASHAEWLAWVEAVGSSRHSKLRGEVDVLRTTNSILKDEVTRIKAEAATLRQYANQRHVTTLALRDEREQRRELLAELAVL 630
            S VDAA+V+R  + SGYL KLG N+ +WKRRFFVL+PITMLFYY++EHDTEPRGCID+D+F    E+RK S    A     +   +S        +   GAT+ +          FEL   GCP+G GF++E     +W  WVE++ + RH KL+ E+DV+R  N +L +E++ ++ + AT R YA+QRHVT LALRDER + RE+ AELA L
Sbjct:   35 SRVDAALVSRGALRSGYLWKLGANVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRKDSGGYSATTAAADTNNTS------GGSGKRGATSTA----------FELYRSGCPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGANKLLLEEISGLEQQVATFRGYADQRHVTVLALRDERHRSREVAAELAAL 231          
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Match: A0A6H5KNE7_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE7_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 6.420e-51
Identity = 104/215 (48.37%), Postives = 138/215 (64.19%), Query Frame = 1
Query:    1 SVVDAAMVARAGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCIDVDIFC---ELRKFSPQQPANVKNREARPSS--PARRDAAATAAEGATANSDDPPQQGPVRFELTYPGCPEGQGFLMEVASHAEWLAWVEAVGSSRHSKLRGEVDVLRTTNSILKDEVTRIKAEAATLRQYANQRHVTTLALRDEREQRRELLAELAVL 630
            S VDAA+++R  + SGYL KLG N+ +WKRRFFVL+PITMLFYY++EHDTEPRGCID+D+F    E+R+ S    A     E   +S    +R AA+TA                  FEL   G P+G GF++E     +W  WVE++ + RH KL+ E+DV+R TN +L DE++ ++ + AT R YA QRHVT LALRDER + RE+ AELA L
Sbjct:  134 SRVDAALISRGALRSGYLWKLGVNVPKWKRRFFVLKPITMLFYYMSEHDTEPRGCIDLDLFDAVREVRRDSGGYSATTAAAETNNTSGGSGKRGAASTA------------------FELYRSGYPDGSGFMLEARGGEDWEQWVESIANGRHGKLQAEMDVMRGTNKLLLDEISGLEQQVATFRGYAEQRHVTVLALRDERHRSREVAAELAAL 330          
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Match: A0A7S4HTX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HTX3_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.730e-13
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    4 VVDAAMVARAGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCIDVD 177
            V  AA  AR    +GYL KLG N+R++KRRFFVLRP T L+Y+L  +D EPRGCI++D
Sbjct:    9 VETAADFARTAPRAGYLHKLGTNVRQYKRRFFVLRPSTHLYYFLGPNDAEPRGCIELD 66          
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Match: A0A7S2Q5J3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q5J3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 9.440e-13
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   13 AAMVARAGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCIDVDIFCE 189
            A   A++  HSGYL KLG NI  +KRRFFVL+P T L+Y+++ +D EPRGCID+D F E
Sbjct:   43 AITFAKSAPHSGYLKKLGKNIHSFKRRFFVLKPSTHLYYFMSPNDVEPRGCIDLDNFVE 101          
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Match: A0A835YN48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN48_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.130e-12
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   31 AGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCIDVDIFCELRKFSPQ 210
            A +H+GYL+KLG +++R+KRRF  LRP+T+L YY+ E DTEPRGCID+D +  +   + Q
Sbjct:   56 APLHAGYLLKLGTSVKRFKRRFCALRPMTLLLYYMHEGDTEPRGCIDIDQYPHITSCTDQ 115          
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Match: A0A7S3Q480_9STRA (Hypothetical protein n=3 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q480_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.440e-12
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 SVVDAAMVARAGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCIDVDI 180
            S + AA  AR    +GYL KLGG++  +KRRFFVL+P T L+Y+L   D EPRGCID+D+
Sbjct:  520 SSITAASFARHAPKAGYLSKLGGSVSEYKRRFFVLKPTTCLYYFLDPSDEEPRGCIDLDL 579          
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Match: K0T095_THAOC (PH domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T095_THAOC)

HSP 1 Score: 73.2 bits (178), Expect = 1.720e-11
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   13 AAMVARAGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCIDVDIF-------CELRKF 201
            A   AR+   SGYL K+G NI ++KRRFFVL+P T L+Y+L+  D EPRGCIDVD+        CE+++ 
Sbjct:  118 ALSFARSAPISGYLRKMGKNITQFKRRFFVLKPSTHLYYFLSSSDNEPRGCIDVDMLTNEGREGCEVKEI 187          
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Match: A0A7S4EE23_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EE23_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.960e-11
Identity = 49/123 (39.84%), Postives = 64/123 (52.03%), Query Frame = 1
Query:   13 AAMVARAGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCIDVDIFCELRKFSPQQPANVKNREARPSSPARRDAAATAAEGATANSDDPPQQGPVRFELTYPGCPEGQGFL 381
            AA +ARA V +GYL  LG N  +WKRRFFVL+P TML+Y+ ++ D EP GC+DV+ F  +      Q   V    AR        AA   A+ A           P+ F L  PG  EG G++
Sbjct:   27 AARLARASVKAGYLHGLGEN-HQWKRRFFVLKPTTMLYYFGSDADEEPLGCVDVEAFTSVSCREVHQDGRVTIELAR--------AAPPGADNAK----------PLIFSLRAPGESEGYGWI 130          
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Match: A0A7S2E8R1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E8R1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.390e-11
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   13 AAMVARAGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCIDVD 177
            AA  AR+   +G+L KLG NI ++KRRFFVL+P T L+Y+++  D+EPRGCID+D
Sbjct:   42 AAAFARSAPKAGFLSKLGKNIHQYKRRFFVLKPTTHLYYFVSPTDSEPRGCIDLD 96          
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Match: A0A7S4ULH5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4ULH5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.510e-11
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   13 AAMVARAGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCIDVD 177
            AA  AR+   +G+L KLG NI ++KRRFFVL+P T L+Y+++  D+EPRGCID+D
Sbjct:  183 AAAFARSAPKAGFLSKLGKNIHQYKRRFFVLKPTTHLYYFVSPTDSEPRGCIDLD 237          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig787.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LHG6_ECTSI6.990e-5247.89PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KNE7_9PHAE6.420e-5148.37PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S4HTX3_9STRA7.730e-1358.62Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2Q5J3_9STRA9.440e-1357.63Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A835YN48_9STRA1.130e-1253.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Q480_9STRA5.440e-1255.00Hypothetical protein n=3 Tax=Chaetoceros debilis T... [more]
K0T095_THAOC1.720e-1150.00PH domain-containing protein n=1 Tax=Thalassiosira... [more]
A0A7S4EE23_9STRA1.960e-1139.84Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2E8R1_9STRA4.390e-1156.36Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S4ULH5_9STRA6.510e-1156.36Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig787contigP-wetherbeei_contig787:124..753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHG6
PFAMsPH
Model size630
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.36e-50
EggNOG OGs2E5VZ@1|root,2SCMX@2759|Eukaryota
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-11_004150.1
DescriptionPleckstrin homology domain.
Cds size612
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187005.7669501-CDS-P-wetherbeei_contig787:123..7351683187005.7669501-CDS-P-wetherbeei_contig787:123..735Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig787 124..735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187005.7777042-UTR-P-wetherbeei_contig787:735..7531683187005.7777042-UTR-P-wetherbeei_contig787:735..753Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig787 736..753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig787.1.1prot_P-wetherbeei_contig787.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig787 124..735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig787.1.1

>prot_P-wetherbeei_contig787.1.1 ID=prot_P-wetherbeei_contig787.1.1|Name=mRNA_P-wetherbeei_contig787.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=204bp
MVARAGVHSGYLMKLGGNIRRWKRRFFVLRPITMLFYYLTEHDTEPRGCI
DVDIFCELRKFSPQQPANVKNREARPSSPARRDAAATAAEGATANSDDPP
QQGPVRFELTYPGCPEGQGFLMEVASHAEWLAWVEAVGSSRHSKLRGEVD
VLRTTNSILKDEVTRIKAEAATLRQYANQRHVTTLALRDEREQRRELLAE
LAVL
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mRNA from alignment at P-wetherbeei_contig787:124..753-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig787.1.1 ID=mRNA_P-wetherbeei_contig787.1.1|Name=mRNA_P-wetherbeei_contig787.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig787:124..753- (Phaeothamnion wetherbeei SAG_119_79)
AGCGTGGTGGACGCGGCGATGGTGGCACGAGCAGGCGTGCACAGCGGCTA CCTGATGAAGCTTGGAGGCAACATCCGACGCTGGAAGCGACGTTTCTTCG TGCTTCGTCCGATCACGATGCTCTTTTACTATCTTACAGAGCACGACACG GAGCCCCGCGGCTGCATCGACGTTGACATATTCTGCGAGCTGCGAAAGTT CTCGCCTCAGCAGCCTGCTAACGTGAAGAACCGCGAGGCGCGGCCTTCTT CTCCAGCGCGGCGTGACGCTGCCGCAACAGCAGCGGAGGGAGCTACGGCC AATTCCGACGACCCGCCGCAGCAAGGGCCCGTGCGTTTCGAGCTGACCTA CCCCGGCTGCCCTGAGGGTCAGGGCTTCTTGATGGAGGTGGCCAGCCACG CGGAGTGGCTCGCCTGGGTGGAGGCCGTCGGCAGCAGCCGGCACAGCAAG CTTCGCGGCGAGGTGGACGTCCTGCGGACCACCAACAGCATCTTAAAGGA CGAAGTGACGCGCATCAAGGCGGAAGCGGCGACGCTGCGCCAGTATGCGA ATCAGCGTCACGTCACGACGCTGGCGTTACGGGACGAGCGGGAGCAGCGC CGCGAGCTGCTAGCGGAGCTGGCTGTTTTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig787:124..753-

>mRNA_P-wetherbeei_contig787.1.1 ID=mRNA_P-wetherbeei_contig787.1.1|Name=mRNA_P-wetherbeei_contig787.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig787:124..753- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCACGAGCAGGCGTGCACAGCGGCTACCTGATGAAGCTTGGAGG
CAACATCCGACGCTGGAAGCGACGTTTCTTCGTGCTTCGTCCGATCACGA
TGCTCTTTTACTATCTTACAGAGCACGACACGGAGCCCCGCGGCTGCATC
GACGTTGACATATTCTGCGAGCTGCGAAAGTTCTCGCCTCAGCAGCCTGC
TAACGTGAAGAACCGCGAGGCGCGGCCTTCTTCTCCAGCGCGGCGTGACG
CTGCCGCAACAGCAGCGGAGGGAGCTACGGCCAATTCCGACGACCCGCCG
CAGCAAGGGCCCGTGCGTTTCGAGCTGACCTACCCCGGCTGCCCTGAGGG
TCAGGGCTTCTTGATGGAGGTGGCCAGCCACGCGGAGTGGCTCGCCTGGG
TGGAGGCCGTCGGCAGCAGCCGGCACAGCAAGCTTCGCGGCGAGGTGGAC
GTCCTGCGGACCACCAACAGCATCTTAAAGGACGAAGTGACGCGCATCAA
GGCGGAAGCGGCGACGCTGCGCCAGTATGCGAATCAGCGTCACGTCACGA
CGCTGGCGTTACGGGACGAGCGGGAGCAGCGCCGCGAGCTGCTAGCGGAG
CTGGCTGTTTTA
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