mRNA_P-wetherbeei_contig7829.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7829.2.1
Unique NamemRNA_P-wetherbeei_contig7829.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.090e-30
Identity = 74/145 (51.03%), Postives = 91/145 (62.76%), Query Frame = 1
Query:   10 WSAIRALMLPLWVRNVALLRRVTEDVAGATFRRTKDPMAVAIFYVALGKDKTLLQLGRLDRP---------------------------GRLEKLLSRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLARPAMLREALQVCL 363
            WS   A++LPLWVR+ A L+RV E VA ATF + +D MA A+F+ ALGK+K LL L + DR                             RLEKLL+ DF +P GR+ AEKNAYVLLR+R F +AAAVFLL RPAM++EALQV L
Sbjct: 1776 WSDASAMLLPLWVRDAAELQRVAESVASATFLQDRDLMAAAMFFAALGKEKKLLALAKADRGFVGQRNLGGGEGDINSTSGRSQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVIL 1920          
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Match: A0A1V9Y649_9STRA (Rav1p_C domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y649_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.310e-19
Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    1 QSTWSAIRALMLPLWVRNVALLRRVTEDVAGATFRRTKDPMAVAIFYVALGKDKTL---LQLGRLDRPGRLEKLLSRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLARPAMLREALQVCL 363
            Q+ W  +R + L LWVR+ A LR + E +A  TF RT+D M+V + Y+ALGK   L    ++ RLD    L + L  DF      + A +NAY LLR++ +  AAA FLL +P  L+EAL++CL
Sbjct: 1298 QALWDDLRPMWLGLWVRDPAKLREIVERMAKCTFMRTRDAMSVCLLYLALGKKSVLGALAKVSRLDSNKTLAEFLLHDFTEERWSSAAVRNAYSLLRKKQYDLAAAFFLLPQPPRLQEALRICL 1421          
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Match: A0A067CKY2_SAPPC (C2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKY2_SAPPC)

HSP 1 Score: 90.5 bits (223), Expect = 1.090e-18
Identity = 49/121 (40.50%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 QSTWSAIRALMLPLWVRNVALLRRVTEDVAGATFRRTKDPMAVAIFYVALGKDKTLLQLGRLDRPGRLEKLLSRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLARPAMLREALQVCL 363
            Q+ W  ++ + L LWVR+ A LR + E +A  TF RT+D M+V + Y+ALGK   L  L ++ R    + L   DF      + A +NAY LLR++ +  AAA FLL +P  L+EAL++C+
Sbjct: 1307 QALWDDLKPMWLGLWVRDPAKLREIVERMAKCTFMRTRDAMSVCLLYLALGKKNVLSALAKVSRVESNKTLADYDFSEERWSSAAVRNAYSLLRKKQYDLAAAFFLLPQPPRLQEALRICI 1427          
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Match: A0A8K1FBS2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBS2_PYTOL)

HSP 1 Score: 85.5 bits (210), Expect = 6.190e-17
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 QSTWSAIRALMLPLWVRNVALLRRVTEDVAGATFRRTKDPMAVAIFYVALGKDK---TLLQLGRLDRPGRLEKLLSRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLARPAMLREALQ 354
            Q+TW  IR + L LWVR++  LR + E +A + + R++D M V +FYVALGK      L ++ +L+    L   L  DF     R  A KNAY LL ++ + AAAA FLL  P  L+EAL+
Sbjct: 1345 QATWEEIRPMWLGLWVRDIKDLRAIIERLAKSIYMRSRDAMDVVLFYVALGKKNILGALSKISKLESNKNLSIFLENDFTQDRWRNAAIKNAYSLLGKKQYEAAAAFFLLCEPPRLQEALR 1465          
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Match: A0A7S2EUC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EUC3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.870e-16
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 1
Query:   10 WSAIRALMLPLWVRNVALLRRVTEDVAGATFRRTKDPMAVAIFYVALGKDKTLLQLGRLDRPGRLEKLL----SRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLARPAMLREALQV 357
            WS  R ++LP W+R+   LR+ +E++A + F++ +D +  A+FYV +   +++  +   D      K      + DF +  G+  AEKNAY LLR+R +LAAA  FLL  P ML  AL V
Sbjct: 1105 WSTARGILLPFWLRSDECLRKTSEEIAQSIFKQKRDILECALFYVIIRNTRSMRNMAATDNSESGRKFFKFTTNYDFTSERGKKAAEKNAYSLLRKRKYLAAATFFLLPEPPMLNTALDV 1224          
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Match: A0A6G0WU56_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU56_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.880e-15
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    1 QSTWSAIRALMLPLWVRNVALLRRVTEDVAGATFRRTKDPMAVAIFYVALGKDKTL---LQLGRLDRPGRLEKLLSRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLARPAMLREALQV 357
            Q+ W  +R L   LWVR+   LR + E VA  TF RTKD M V + Y+AL K   L    ++ RL+    L   L+ DF        A +NAY LLR++ +  AAA FLL  P  L+E+L++
Sbjct: 1273 QAVWEDLRPLWPGLWVRDPLKLRSIVEKVAKCTFTRTKDAMTVCLLYIALNKQNVLGALAKVSRLESNKTLADFLAHDFSEERWSHAAIRNAYSLLRKKQYELAAAFFLLPHPPRLQESLRI 1394          
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Match: A0A7S3V901_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V901_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.550e-15
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    7 TWSAIRALMLPLWVRNVALLRRVTEDVAGATFRRTKDPMAVAIFYVALGKDKTLLQLGRLDRP--GR--LEKLLSRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLARPAMLREALQV 357
            TW   R+L +P W+R+   L+ ++E++A   ++ + D +  A+FYV  G  + L  +   DR   GR  L+ +   +F +  GR  AEKNA+ LLR+R + AAAA FLLA P M++ AL +
Sbjct:  539 TWDIARSLRIPFWLRSDDALKSISEEIAQTKYKESMDVVECALFYVITGNMRMLKTVAAADRKTSGRTFLQFVTKYNFSSQRGRMAAEKNAFSLLRKRKYGAAAAFFLLAEPPMMKSALNI 659          
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.590e-15
Identity = 53/113 (46.90%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  106 RTKDPMAVAIFYVALGKDKTLLQLGRLDRP---------------------------GRLEKLLSRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLARPAMLREALQVCL 363
            RT      A+F+ ALGK+K LL L + DR                             RLEKLL+ DF +P GR+ AEKNAYVLLR+R F +A AVFLL RPAM++EALQV L
Sbjct: 1899 RTPAGCWAAMFFAALGKEKKLLALAKADRGFVGQRNLSGGEGDINSTSGRSQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAVAVFLLPRPAMVKEALQVIL 2011          
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Match: A0A3L6VL01_9STRA (Rav1p_C domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VL01_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.520e-15
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   10 WSAIRALMLPLWVRNVALLRRVTEDVAGATFRRTKDPMAVAIFYVALGKDKTLLQLGRLDRPGRLEKLLSRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLA 324
            W  ++ L +P W+ ++A L++ TE +A   +  TKDP AVA+++V LGK + L  + RL    ++  LL+ DF     +A A KNA+VL  ++ +L AAA FLLA
Sbjct:  155 WHRMQKLRVPFWLDDIARLKQTTERMANRAYAATKDPFAVALYFVLLGKTRLLSNVFRLAHETKIADLLANDFDDDRWKAAAIKNAFVLKSKQRYLLAAAFFLLA 259          
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Match: A0A3R6X534_9STRA (Rav1p_C domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6X534_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.570e-15
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   10 WSAIRALMLPLWVRNVALLRRVTEDVAGATFRRTKDPMAVAIFYVALGKDKTLLQLGRLDRPGRLEKLLSRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLA 324
            W  ++ L +P W+ ++A L++ TE +A   +  TKDP AVA+++V LGK + L  + RL    ++  LL+ DF     +A A KNA+VL  ++ +L AAA FLLA
Sbjct:  674 WHRMQKLRVPFWLDDIARLKQTTERMANRAYAATKDPFAVALYFVLLGKTRLLSNVFRLAHETKIADLLANDFDDDRWKAAAIKNAFVLKSKQRYLLAAAFFLLA 778          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7829.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G824_ECTSI1.090e-3051.03PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1V9Y649_9STRA2.310e-1942.74Rav1p_C domain-containing protein n=1 Tax=Achlya h... [more]
A0A067CKY2_SAPPC1.090e-1840.50C2 domain-containing protein n=2 Tax=Saprolegnia T... [more]
A0A8K1FBS2_PYTOL6.190e-1742.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2EUC3_9STRA2.870e-1637.50Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A6G0WU56_9STRA1.880e-1540.16Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3V901_9STRA2.550e-1538.02Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
A0A6H5K928_9PHAE2.590e-1546.90PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A3L6VL01_9STRA4.520e-1540.00Rav1p_C domain-containing protein (Fragment) n=2 T... [more]
A0A3R6X534_9STRA4.570e-1540.00Rav1p_C domain-containing protein n=1 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7829contigP-wetherbeei_contig7829:2516..2968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G824
PFAMsC2,Rav1p_C
Model size363
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue1.73e-29
EggNOG OGsKOG1064@1|root,KOG1064@2759|Eukaryota
Descriptionvacuolar proton-transporting V-type ATPase complex assembly
Cds size333
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.1619115-UTR-P-wetherbeei_contig7829:2515..25451683187003.1619115-UTR-P-wetherbeei_contig7829:2515..2545Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7829 2516..2545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.176035-CDS-P-wetherbeei_contig7829:2545..27131683187003.176035-CDS-P-wetherbeei_contig7829:2545..2713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7829 2546..2713 +
1683187003.1940236-CDS-P-wetherbeei_contig7829:2803..29681683187003.1940236-CDS-P-wetherbeei_contig7829:2803..2968Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7829 2804..2968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7829.2.1prot_P-wetherbeei_contig7829.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7829 2546..2968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7829.2.1

>prot_P-wetherbeei_contig7829.2.1 ID=prot_P-wetherbeei_contig7829.2.1|Name=mRNA_P-wetherbeei_contig7829.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MLPLWVRNVALLRRVTEDVAGATFRRTKDPMAVAIFYVALGKDKTLLQLG
RLDRPGRLEKLLSRDFRTPEGRAVAEKNAYVLLRRRNFLAAAAVFLLARP
AMLREALQVCL
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mRNA from alignment at P-wetherbeei_contig7829:2516..2968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7829.2.1 ID=mRNA_P-wetherbeei_contig7829.2.1|Name=mRNA_P-wetherbeei_contig7829.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig7829:2516..2968+ (Phaeothamnion wetherbeei SAG_119_79)
CAGTCGACGTGGTCGGCGATCCGCGCGCTGATGCTCCCGCTGTGGGTGCG CAACGTGGCGCTTCTGCGGCGGGTGACGGAGGATGTGGCGGGGGCGACAT TCCGGCGTACGAAGGACCCAATGGCGGTCGCGATCTTCTACGTGGCGCTT GGCAAAGACAAGACGCTGCTACAGCTGGGCCGCTTGGACCGCCCGGGCGT CGGGGCACGGCCGCTGAGCGGCGCTGAGCGCTGTTGCGGACTTGACGCGG ATGCAGCCGGAAAGCCGGCCGGACCGTCCAGCGGCCAGCGGCTGGAGAAG CTGCTATCGCGCGACTTCCGGACGCCCGAGGGGCGCGCGGTAGCCGAGAA GAACGCGTACGTTCTGCTGCGCCGGCGGAACTTCTTGGCGGCAGCGGCGG TGTTCTTGCTGGCCCGGCCGGCGATGCTTCGCGAGGCACTTCAGGTTTGT CTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7829:2516..2968+

>mRNA_P-wetherbeei_contig7829.2.1 ID=mRNA_P-wetherbeei_contig7829.2.1|Name=mRNA_P-wetherbeei_contig7829.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig7829:2516..2968+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCCGCTGTGGGTGCGCAACGTGGCGCTTCTGCGGCGGGTGACGGA
GGATGTGGCGGGGGCGACATTCCGGCGTACGAAGGACCCAATGGCGGTCG
CGATCTTCTACGTGGCGCTTGGCAAAGACAAGACGCTGCTACAGCTGGGC
CGCTTGGACCGCCCGGGCCGGCTGGAGAAGCTGCTATCGCGCGACTTCCG
GACGCCCGAGGGGCGCGCGGTAGCCGAGAAGAACGCGTACGTTCTGCTGC
GCCGGCGGAACTTCTTGGCGGCAGCGGCGGTGTTCTTGCTGGCCCGGCCG
GCGATGCTTCGCGAGGCACTTCAGGTTTGTCTA
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