mRNA_P-wetherbeei_contig10223.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10223.3.1
Unique NamemRNA_P-wetherbeei_contig10223.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Match: A0A3C1L326_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L326_9ACTN)

HSP 1 Score: 191 bits (485), Expect = 5.250e-60
Identity = 91/134 (67.91%), Postives = 110/134 (82.09%), Query Frame = 1
Query:   22 HDAATLRRRRILSRSWGAFVVAWSFVRALIVWAALGDYGINPWIYLSIDLASSIVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIFLGTKTLPKRVIVVICLIILLTFSIAVVATVRKVREGRRLR 423
            HDA TL+RR+ LSR+W   VV WS +R +IVWAA+GDYG+NPWIYLS+DL+S+IVDAFTTPRMVLSFIDD +K A KW  ISL  FI+PDLYIFLGT+TLP R+IVV+CLII LT +I V+  VR++R GR  R
Sbjct:    8 HDAETLQRRKRLSRTWAGIVVVWSLIRTVIVWAAVGDYGLNPWIYLSLDLSSAIVDAFTTPRMVLSFIDDHFKQAIKWAFISLVAFIVPDLYIFLGTRTLPTRIIVVVCLIIGLTLTIGVIGVVRRIRRGRNER 141          
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Match: A0A6I3F0Y1_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3F0Y1_9ACTN)

HSP 1 Score: 186 bits (472), Expect = 6.250e-58
Identity = 89/142 (62.68%), Postives = 112/142 (78.87%), Query Frame = 1
Query:   13 LVHHDAATLRRRRILSRSWGAFVVAWSFVRALIVWAALGDYGINPWIYLSIDLASSIVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIFLGTKTLPKRVIVVICLIILLTFSIAVVATVRKVREGRRLRLAEKA 438
            L HHD  TL+RRR LSR+W   VV WS +R +IVWAA+GDYG+NPWIYLS+DL ++++DA +TPRMVL+FIDD  + A +W LISL VFIIPDLYIFLGT+TLPKR+I+VIC II LT ++ V    RK+++GR LR A  A
Sbjct:    5 LRHHDPETLQRRRRLSRTWAGIVVVWSLIRTVIVWAAVGDYGLNPWIYLSLDLTAAVIDALSTPRMVLNFIDDHMRKAIEWALISLVVFIIPDLYIFLGTRTLPKRIILVICAIIGLTLTVGVYGVTRKIKKGRALRAAALA 146          
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Match: A0A3C2B156_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B156_9ACTN)

HSP 1 Score: 185 bits (470), Expect = 1.530e-57
Identity = 87/139 (62.59%), Postives = 109/139 (78.42%), Query Frame = 1
Query:   13 LVHHDAATLRRRRILSRSWGAFVVAWSFVRALIVWAALGDYGINPWIYLSIDLASSIVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIFLGTKTLPKRVIVVICLIILLTFSIAVVATVRKVREGRRLRLA 429
            L HHD ATL+RR++LSR+W   VV WS +RALIVWAA+GDYG+NPW+YL IDL ++ +D +TTPRMVL+FIDD YK A KW  ISL VFIIPDLYIF GT  LPK V+++IC+II  TF +AV + V K+R+GR  + A
Sbjct:    3 LHHHDPATLKRRKVLSRTWAGMVVGWSLIRALIVWAAVGDYGLNPWVYLVIDLIAAGIDGYTTPRMVLAFIDDHYKQAVKWAAISLIVFIIPDLYIFFGTSELPKHVLIIICIIISATFLLAVWSVVMKIRKGRAAKAA 141          
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Match: A0A7X9KIR5_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KIR5_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 2.260e-42
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   22 HDAATLRRRRILSRSWGAFVVAWSFVRALIVWAALGDYGINPWIYLSIDLASSIVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIF 303
            HDA TL+RR+ LSR+W   VV WS +R +IVWAA+GDYG+NPWIYLS+DL+S+IVDAFTTPRMVLSFIDD +K A KW  ISL  FI+PDLY F
Sbjct:    8 HDAETLQRRKRLSRTWAGIVVVWSLIRTVIVWAAVGDYGLNPWIYLSLDLSSAIVDAFTTPRMVLSFIDDHFKQAIKWAFISLVAFIVPDLYAF 101          
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Match: A0A2G4GMJ1_9ACTN (Uncharacterized protein n=5 Tax=root TaxID=1 RepID=A0A2G4GMJ1_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 1.450e-26
Identity = 55/131 (41.98%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   25 DAATLRRRRILSRSWGAFVVAWSFVRALIVWAALGDYGINPWIYLSIDLASSIVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIFLGTKTLPKRVIVVICLIILLTFSIAVVATVRKVREGRR 417
             +A   +RR+L R W   V+A+  VRA++VW ALG YG+NPWIYL +D+ SS   A  T R+V S ID ++  A  WGL++   F+IPDLYI +  + +P  V  +I  II         +   K+R GRR
Sbjct:    4 SSARSAKRRLLERLWVIVVIAYGAVRAIVVWKALGQYGVNPWIYLVLDVTSSWPYAVATARLVTSVIDREFSRARSWGLLAAITFLIPDLYILVVARHVPTEVYAIIIAIIXXXXXXXXXSLFIKIRNGRR 134          
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Match: A0A6I3CIG0_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3CIG0_9ACTN)

HSP 1 Score: 93.6 bits (231), Expect = 1.360e-21
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   43 RRRILSRSWGAFVVAWSFVRALIVWAALGDYGINPWIYLSIDLASSIVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIFLGTKTLPKRVIVV 342
            +RR+L R W   V+ +   RA +VW ALG YG+NPW+YL++D+ SS      T R+V S ID ++  A  WG+I+   F++PDLYI +  + +P  V V+
Sbjct:   10 KRRLLERLWVMVVILYGAGRAFVVWKALGKYGVNPWLYLALDITSSWPYGVATARLVTSVIDREFSRARTWGVIAAIAFLLPDLYILVSARHVPTEVYVI 109          
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Match: A0A7K0T152_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K0T152_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 6.250e-16
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 PMPILVHHDAATLRRRRILSRSWGAFVVAWSFVRALIVWAALGDYGINPWIYLSIDLASSIVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIFLGTKTLP 324
            P  +L + + A  RR+ +  R W   V+AWS  R+L+V      YG+NP IY +ID  SSI  A+ + + +LS+ID +   +  WGL+++ +F +PDLYI    K +P
Sbjct:    3 PRDLLHYLEDAESRRKGV--RVWILLVLAWSLTRSLVVAKVFDAYGLNPRIYFAIDFLSSIPYAYASAQSLLSYIDKKPNKSIAWGLLTIVMFYLPDLYIVFAAKHVP 108          
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Match: A0A524B4T0_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B4T0_9ACTN)

HSP 1 Score: 75.5 bits (184), Expect = 1.130e-14
Identity = 41/123 (33.33%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   46 RRILSRSWGAFVVAWSFVRALIVWAALGDYGINPWIYLSIDLASSIVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIFLGTKTLPKRV---IVVICLIILLTFSIAVVATVRKVR 405
            R +L+R W    V + FVR L+VW  L DYGI+P+++ +I+L SS +  + + R+V++ ID   ++     L+SL  ++ PD+Y+F      P  +   +V I ++  L  SI +V ++R++R
Sbjct:    5 RPLLARGWIVASVLYGFVRILLVWRFLSDYGIDPFVFAAIELTSSALFGWASGRLVVAVIDRDRRSRGVMALVSLAGYLAPDVYVFASAGRFPDGLLATVVTIAVVSALLTSIGIVRSIRRLR 127          
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Match: A0A7K1CQ61_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1CQ61_9ACTN)

HSP 1 Score: 73.6 bits (179), Expect = 8.620e-14
Identity = 37/128 (28.91%), Postives = 70/128 (54.69%), Query Frame = 1
Query:   40 RRRRILSRSWGAFVVAWSFVRALIVWAALGDYGINPWIYLSIDLASSIVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIFLGTKTLPKRVIVVICLIILLTFSIAVVATVRKVREGRRLR 423
            + RR++ R W   V+ W   +  ++   L  YG+NP+IY +I ++ SI  A  T RM+ +FI+  +K +  +G  +     +PD+YIF+  K +P+ +   + LI++L   +++   V  VR    ++
Sbjct:   11 KHRRLIQRWWILIVILWDVSKTFVIDKTLAQYGVNPYIYFAITISISIPYALVTARMLFAFIEKHWKNSIVYGSAAAIFHFLPDVYIFVTAKEVPRTLYDGLILIVVLFTGLSIRGIVLHVRANHAVQ 138          
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Match: A0A6J6CCT7_9ZZZZ (Unannotated protein n=4 Tax=root TaxID=1 RepID=A0A6J6CCT7_9ZZZZ)

HSP 1 Score: 63.5 bits (153), Expect = 9.630e-10
Identity = 42/128 (32.81%), Postives = 69/128 (53.91%), Query Frame = 1
Query:   61 RSWGAFVVAWSFVRALIVWAALGDYGINPWIYLSIDLASS----IVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIFLGTKTLPKRVIVVICLIILLTFSIAVVATVRKVREGRRLRLAE 432
            R+W   +VA+S  RAL+ W AL  YG+NPW++L+IDL ++    I  A T    +L   D   + A  W  + + +F+ P +YIF  +  +P      +   ++L   +AV+ T R+VRE    + +E
Sbjct:   21 RAWSVGIVAFSAARALLAWPALARYGVNPWLFLAIDLLTAPPYGISQAVTVK--ILRDPDRPPRDALGWCAMVVAMFLAPYVYIFAASGEMPALAYAGLAAWMVLFGVLAVLRTARQVREPNESQNSE 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10223.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A3C1L326_9ACTN5.250e-6067.91Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6I3F0Y1_9ACTN6.250e-5862.68Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A3C2B156_9ACTN1.530e-5762.59Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7X9KIR5_9ACTN2.260e-4270.21Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A2G4GMJ1_9ACTN1.450e-2641.98Uncharacterized protein n=5 Tax=root TaxID=1 RepID... [more]
A0A6I3CIG0_9ACTN1.360e-2142.00Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A7K0T152_9ACTN6.250e-1637.96Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A524B4T0_9ACTN1.130e-1433.33Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A7K1CQ61_9ACTN8.620e-1428.91Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6J6CCT7_9ZZZZ9.630e-1032.81Unannotated protein n=4 Tax=root TaxID=1 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10223contigP-wetherbeei_contig10223:1591..2046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size456
Hectar predicted targeting categorysignal peptide
Exons1
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.894941-CDS-P-wetherbeei_contig10223:1590..20431683185859.894941-CDS-P-wetherbeei_contig10223:1590..2043Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10223 1591..2043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.9061675-UTR-P-wetherbeei_contig10223:2043..20461683185859.9061675-UTR-P-wetherbeei_contig10223:2043..2046Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10223 2044..2046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10223.3.1prot_P-wetherbeei_contig10223.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10223 1591..2043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10223.3.1

>prot_P-wetherbeei_contig10223.3.1 ID=prot_P-wetherbeei_contig10223.3.1|Name=mRNA_P-wetherbeei_contig10223.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MPILVHHDAATLRRRRILSRSWGAFVVAWSFVRALIVWAALGDYGINPWI
YLSIDLASSIVDAFTTPRMVLSFIDDQYKTAAKWGLISLFVFIIPDLYIF
LGTKTLPKRVIVVICLIILLTFSIAVVATVRKVREGRRLRLAEKALVTEI
*
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mRNA from alignment at P-wetherbeei_contig10223:1591..2046-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10223.3.1 ID=mRNA_P-wetherbeei_contig10223.3.1|Name=mRNA_P-wetherbeei_contig10223.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig10223:1591..2046- (Phaeothamnion wetherbeei SAG_119_79)
CCGATGCCGATCCTGGTGCACCACGACGCGGCCACGTTGCGCCGTCGGCG CATCCTCAGCCGGTCCTGGGGCGCTTTCGTCGTGGCCTGGTCGTTCGTCC GCGCGCTGATCGTGTGGGCGGCGCTCGGCGACTACGGCATCAACCCGTGG ATCTACCTCTCCATCGACCTGGCCTCGTCGATCGTCGACGCCTTCACCAC ACCGCGCATGGTCCTCAGCTTCATCGACGACCAGTACAAGACGGCCGCCA AGTGGGGGCTGATCTCGCTCTTCGTGTTCATCATCCCCGACCTGTACATC TTCCTCGGCACCAAGACGCTGCCGAAGCGGGTGATCGTCGTCATCTGCCT GATCATCCTCCTCACGTTCTCGATCGCGGTGGTGGCCACGGTGCGCAAGG TGCGTGAAGGTCGACGGCTGCGACTCGCGGAGAAGGCGCTCGTCACAGAG ATCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10223:1591..2046-

>mRNA_P-wetherbeei_contig10223.3.1 ID=mRNA_P-wetherbeei_contig10223.3.1|Name=mRNA_P-wetherbeei_contig10223.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig10223:1591..2046- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGATCCTGGTGCACCACGACGCGGCCACGTTGCGCCGTCGGCGCAT
CCTCAGCCGGTCCTGGGGCGCTTTCGTCGTGGCCTGGTCGTTCGTCCGCG
CGCTGATCGTGTGGGCGGCGCTCGGCGACTACGGCATCAACCCGTGGATC
TACCTCTCCATCGACCTGGCCTCGTCGATCGTCGACGCCTTCACCACACC
GCGCATGGTCCTCAGCTTCATCGACGACCAGTACAAGACGGCCGCCAAGT
GGGGGCTGATCTCGCTCTTCGTGTTCATCATCCCCGACCTGTACATCTTC
CTCGGCACCAAGACGCTGCCGAAGCGGGTGATCGTCGTCATCTGCCTGAT
CATCCTCCTCACGTTCTCGATCGCGGTGGTGGCCACGGTGCGCAAGGTGC
GTGAAGGTCGACGGCTGCGACTCGCGGAGAAGGCGCTCGTCACAGAGATC
TGA
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