mRNA_P-wetherbeei_contig76.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig76.6.1
Unique NamemRNA_P-wetherbeei_contig76.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Match: D7G362_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G362_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 1.930e-62
Identity = 127/247 (51.42%), Postives = 166/247 (67.21%), Query Frame = 2
Query:  212 RCLAGGSAFFACLVASQALQG-ALRISTGTPLGIPSLIGLATVCGASAAAVGVSEAAGSFL---TTGDARKVL----SLPQAQAAPENLEALAGVGAFGVAAFRALGGRFHSIAPSRLDSLGSFAHSPFSLRATLNYATAQEKVALSKLGEVFGCHSCGGRR-GPFHADHMPPVKVVAAANARLWRRMLRATVSQRFYPQCKACSELQSSAVRNASGAFVYHFR--ALRPYHATGALVVLATVLLAK 919
            + + GG AF A L  SQALQG ALR+S  +PLG+P+ +G ATV  AS A+V V+E   S L   ++ D++++     S+ +A   P N   + G  +FG+  FRALGGRF S+APS L   G+F+    SL ATL YA+  ++ AL+ LG+ FGCH+CG R    F ADHMPP+K V  ANA+LWRR LR TVSQRFYPQC+ACS LQS+AVR+      YHF   ALRPYHATG L+VL +++LA+
Sbjct:   51 QAVGGGGAFVAVLALSQALQGFALRVSCSSPLGLPTALGFATVAAASVASVRVAEGISSGLEAASSKDSQRISDPWRSMLEAAEQPANSGEI-GASSFGLVLFRALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASDGKRQALATLGKNFGCHTCGTRAPATFIADHMPPLKTVKLANAKLWRRALRQTVSQRFYPQCQACSTLQSAAVRSGQTTLRYHFTLAALRPYHATGGLLVLGSLVLAQ 296          
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Match: A0A835YVL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL4_9STRA)

HSP 1 Score: 193 bits (490), Expect = 7.570e-57
Identity = 117/239 (48.95%), Postives = 155/239 (64.85%), Query Frame = 2
Query:  257 SQALQGA-LRISTGTPLGIPSLIGLATVCGASAAAVGVSEAAGSFLTTGDAR-KVLSLPQAQAAPENLEALAGVGAFGVAAFRALGGRFHSIAPSRLDSLGSFAHSPFSLRATLNYATAQEKVALSKLGEVFGCHSCGGRRGP-FHADHMPPVKVVAAANARLWRRMLRATVSQRFYPQCKACSELQSSAVRNASGAFV--YHFRALRPYHATGALVVLATVLLAKHCDSQAKAVRKQK 958
            SQA+QGA LR++  TPLGIP+ +G  TV GAS  A+ VSEA  + LTTG+ +  V S  +  + P   EA A   AFG+A F+ LGG F  IAPS +D+LG+F+    SL ATL YAT +E+  ++ LGE +GCHSCG R G  ++ADHMPP+K V  ANARLWRR+   TV+QRFYPQCK CS++Q+  VR A G FV  +H   +  YHATG L+V   + L ++   +      +K
Sbjct:    6 SQAVQGAVLRVAASTPLGIPNALGFVTVAGASLVALHVSEAVSTALTTGNLQLAVQSTIETASDPGPAEASAV--AFGLALFKCLGGTFGGIAPSLIDNLGAFSRFKASLPATLLYATTEERGVINALGETYGCHSCGRRAGAKYNADHMPPLKYVKKANARLWRRVTGLTVTQRFYPQCKPCSDIQAQVVR-ADGRFVKYHHPLTVHRYHATGLLLVAGVLCLREYARERTARAALRK 241          
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Match: A0A1V9ZS53_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS53_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.740e-35
Identity = 86/243 (35.39%), Postives = 122/243 (50.21%), Query Frame = 2
Query:  170 RQIEVLGYCIEAGARCLAGGSAFFACLVASQALQGALRISTGTPLGIPSLIGLATVCGASAAAVGVSEAAGSFLTTGDARKVLSLPQAQAAPENLEALAGVGAFGVAAFRALGGRFHSIAPSRLDSLGSFAHSPFSLRATLNYATAQEKVALSKLGEVFGCHSCGGRRGPFHADHMPPVKVVAAANARLWRRMLRATVSQRFYPQCKACSELQSSAVRNASGAFVYHFRALRPYHATGALVVL 898
            R   ++G         + GG+ F   + A+Q L   L +S   P+ +PS++G   V  +SA A       G+F   G  +    L    AA             G+  FR LGGRF ++APS     G+F H+  +L AT+ YA    +  +   G ++GCH+CG R   +HADHMPPV V  A NARLW +M   +V+QR+YPQC+ CS  Q + V+  +     H   LR YH TG  +VL
Sbjct:   25 RDHRLVGVLERTAIDAVGGGALFLGGVSATQVLMYVLGVSVSMPV-LPSVLGAVGVASSSACA-------GAFCFRGTGKDPTPLQLTAAATS-----------GLLLFRLLGGRFRALAPSDFRHPGAFGHTKITLPATIEYADGNARAVIQSFGRLYGCHTCGTRSSKYHADHMPPVLVAKAENARLWAKMF-GSVTQRYYPQCEQCSNTQGALVKKNAKQLKTHLLQLRSYHWTGFWMVL 247          
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Match: W7TNU7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNU7_9STRA)

HSP 1 Score: 132 bits (333), Expect = 8.070e-33
Identity = 97/277 (35.02%), Postives = 137/277 (49.46%), Query Frame = 2
Query:  152 WRSSEERQIEVLGYCIEAGARCLAGGSAFFACLVASQALQGALRISTGTPLGIPSLIGLATVCGASAAAVGVSEAAGSFLTTG----------------DARKVLSLP-------QAQAAPENLEALAGVGAFGVAAFRALGGRFHSIAPSRLDSLGSFAHSPFSLRATLNYATAQEKVALSKLGEVFGCHSCGGRR-GPFHADHMPPVKVVAAANARLWRRMLRATVSQRFYPQCKACSELQSSAVRNASGAFVYHFRALRPYHATGALVVLATVL 910
            WR S+E  ++         +R  AGG  F   L ASQ LQG L +         +L G+ +V   S  A   ++ A + L+                  D R  +S          A    E L   A     G+  F+ LGGRF  +APS +   G+F +   +L A L YA+ ++K  L   G V+GCH+CG R+ G +  DHMPP KV    + R WRR+L   V QRF PQC+ CS +QS+AVR+     VYH+ +LR YHATGA++ + ++L
Sbjct:    9 WRFSQEDWLKA--------SRLTAGGVTFLLTLSASQFLQGRL-LGISAASRAATLAGMLSVSTGSMLASWAADEAPATLSVALGWVPEKDRRRKGGVIDKRGTISSSTFSLLGYDAGKKKERLLGAARTALVGMLLFKGLGGRFSGVAPSNVAQPGAFFNVRGTLPAGLEYASPKQKRRLDMFGWVYGCHTCGRRQMGDYVGDHMPPRKVAVEMSRRWWRRLLGIRVKQRFTPQCRPCSSIQSAAVRSDRRILVYHYLSLRRYHATGAVLEVVSLL 276          
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Match: A0A067CVX6_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVX6_SAPPC)

HSP 1 Score: 133 bits (334), Expect = 9.270e-33
Identity = 90/241 (37.34%), Postives = 123/241 (51.04%), Query Frame = 2
Query:  179 EVLGYCIEAGARCLAGGSAFFACLVASQAL-QGALRISTGTPLGIPSLIGLATVCGASAAAVGVSEAAGSFLTTGDARKVLSLPQAQAAPENLEALAGVGAFGVAAFRALGGRFHSIAPSRLDSLGSFAHSPFSLRATLNYATAQEKVALSKLGEVFGCHSCGGRRGPFHADHMPPVKVVAAANARLWRRMLRATVSQRFYPQCKACSELQSSAVRNASGAFVYHFRALRPYHATGALVVL 898
            +VL   +E  A    GG A F   V+   L    LRIS   P+ +PSL+G   V  +SA A       G+F           L      P  L+ L      G+  FR LGGRF ++APS     G+F H+  SL AT+ YA    +  +   G ++GCH+CG +R  +HADHMPPV V  A NAR+W ++    V+QR+YPQC++CS  Q + V+  +     H   LR YH TG  +VL
Sbjct:   26 QVLVSALERTAIDAVGGGALFLGGVSLTHLGMYVLRISVAMPV-LPSLLGGLGVASSSAMA-------GAFC----------LRHGSTEPTPLQ-LTAAATSGLLLFRLLGGRFRALAPSDFRHPGAFGHARISLPATIEYADGNARAVIQSFGRLYGCHTCGTKRSKYHADHMPPVLVAKAENARVWAKLF-GPVTQRYYPQCESCSNTQGALVKKNAKQLKLHLTELRAYHWTGFWMVL 246          
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Match: A0A7S4IEL5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IEL5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.180e-30
Identity = 102/237 (43.04%), Postives = 129/237 (54.43%), Query Frame = 2
Query:  218 LAGGSAFFACLVASQALQ-GALRISTGTPLGIPSLIGLATVCGASA----AAVGVSEAAG-SFLTTGDAR--KVLSLPQAQAA--------PENLEALAGVGAFGVAAFRALGGRFHSIAPSRLDSLGSFAHSPFSLRATLNYATAQEKVALSKLGEVFGCHSCGGR----RGP------FHADHMPPVKVVAAANARLWRRMLRATVSQRFYPQCKACSELQSSAVRNASGAFVYH 850
            L+G  AF + L AS   Q   L ISTG+   +P+L+GL +V  AS     AAVG  +A    ++  GD R  K  S   A+A+        P  L     V AFG+ AF+ LGGRF SI+PS    LGSFA +  SL AT+ Y TA+E+ A+ +LG  FGCH+CG R    R P      FHADHMPP  V    N R +R+ L  TV QRFYPQC +CS  Q   + +AS     H
Sbjct:   73 LSGTVAFASALAASTFAQLRILGISTGSIPPVPTLLGLGSVGAASVLSQWAAVGTYDALRRGWVGNGDRRTGKRWSGSSAEASNHSHLGCNPHTLR----VCAFGLVAFKLLGGRFWSISPSSYTHLGSFARA--SLPATMKYGTAKERAAIERLGRSFGCHTCGSRMIFSRLPGSSAVRFHADHMPPKAVAEQMNRRWYRQALGQTVRQRFYPQCVSCSNEQGGILSSASNELRKH 303          
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Match: A0A6A3MHG9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MHG9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.600e-28
Identity = 90/280 (32.14%), Postives = 134/280 (47.86%), Query Frame = 2
Query:  161 SEERQIEVLGYCIEAGARCLAGGSAFFACLVASQALQGALRISTGTPLGIPSLIGLATVCGASAAAVGVSEA------------------------AGSFLTTGDARKVL---------SLPQAQAAPENLEALAGVGAFGVAAFRALGGRFHSIAPSRLDSLGSFAHSPFSLRATLNYATAQEKVALSKLGEVFGCHSCGGRRGP-FHADHMPPVKVVAAANARLWRRMLRATVSQRFYPQCKACSELQSSAVRNASGAFVYHFRALRPYHATGALVVL 898
            + ER + +             GG  F   + A+Q  Q  LR+ + +   +P  +G+A V  +S AA+ ++ A                        +G  L    A ++L          LPQA   P  + A     A G+  F+ LGGR +++APS    LG+F     SL AT  YAT  E+  + + G ++GCH+CG +RG  +HADHMPP  V    + + +R++L  T + RFYPQC++CS  QSS V+        H  +LR YHATG  +VL
Sbjct:   19 ASERSVSLYEALTAHALDAATGGVLFLGGVSAAQVAQKLLRVGSASGFLLPQALGVAAVGASSVAALHLASAPREVFQELAAQQKXXXXXXXXXXXSGRDLQPPTAWRLLRSKARERWEDLPQA---PYPVYA-----AMGLLCFKLLGGRPNALAPSPFADLGAFHLKKASLPATAEYATGVERGVIQQFGRLYGCHTCGVKRGVRYHADHMPPKLVAKRRDEQFFRKLLGRTTAFRFYPQCESCSNQQSSVVKQWKSTLKMHLLSLRAYHATGLWLVL 290          
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Match: A0A7S2R906_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R906_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.480e-28
Identity = 90/229 (39.30%), Postives = 115/229 (50.22%), Query Frame = 2
Query:  206 GARCLAGGSAFFACLVASQALQGALRISTGTPLGIPS------LIGLATVCGASAAAVGVS-EAAGSFLTTGDARKVLSLPQAQAAPENLEALAGVGAF-------------GVAAFRALGGRFHSIAPSRLDSLGSFAH-SPFSLRATLNYATAQEKVALSKLGEVFGCHSCGG--RRGPFHADHMPPVKVVAAANARLWRRMLRATVSQRFYPQCKACSELQSSAVR 823
            G  C+A G +F   +   QA Q  LR++T +PL   S      L GLAT    S+   GV+  A  +F   G +          + P +   +  +GA              GV  F +LGG   S +PS    LG+FA     SL ATL+YAT +E+  ++ LG   GCHSCG   R G F ADH PPVK   A N  LWRR+    VSQRFYPQC+ACS +QS  VR
Sbjct:   26 GKACVAAGVSFLGAVNIGQAAQATLRVNTASPLLASSCSLVTLLAGLATSTYVSSELAGVNTRAQQAFRGVGKSFAAAVHSTGLSVP-SFRGMGSLGAIWDSHHQTIVASLCGVLLFYSLGGAPTSFSPSDARHLGAFARPKQGSLGATLSYATEKERSLINALGRKLGCHSCGKQHRVGSFIADHQPPVKFTKARNTALWRRITGLKVSQRFYPQCQACSSIQSRVVR 253          
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Match: D0NUV7_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NUV7_PHYIT)

HSP 1 Score: 119 bits (297), Expect = 2.120e-27
Identity = 61/142 (42.96%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  476 AFGVAAFRALGGRFHSIAPSRLDSLGSFAHSPFSLRATLNYATAQEKVALSKLGEVFGCHSCGGRRGP-FHADHMPPVKVVAAANARLWRRMLRATVSQRFYPQCKACSELQSSAVRNASGAFVYHFRALRPYHATGALVVL 898
            A G+  F+ LGGR  S+APS   +LG+F     SL AT+ YAT+ E+  + + G +FGCH+CG +RG  +HADHMPP  V    + +L RR+L    + RFYPQC+ CS  Q + V+        H  + R YHATG  ++L
Sbjct:  146 AMGLLCFKLLGGRMSSLAPSPFANLGAFHLKKASLPATIEYATSVERGIIREFGRLFGCHTCGVKRGVRYHADHMPPKLVAKHTDEQLVRRLLGRKTTFRFYPQCEPCSNQQGTVVKQWKSTLKLHLVSFRAYHATGMWLIL 287          
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Match: A0A484EB96_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EB96_BRELC)

HSP 1 Score: 118 bits (295), Expect = 8.580e-27
Identity = 57/140 (40.71%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  482 GVAAFRALGGRFHSIAPSRLDSLGSFAHSPFSLRATLNYATAQEKVALSKLGEVFGCHSCGGRRGP-FHADHMPPVKVVAAANARLWRRMLRATVSQRFYPQCKACSELQSSAVRNASGAFVYHFRALRPYHATGALVVL 898
            G+  F+ LGGR  ++APS L +LG+F     SL AT+ YAT+ E+  + + G ++GCH+CG +RG  +HADHMPP  + +  +A+  R         RFYPQC++CS LQ + V++       H  + R YHATG  ++L
Sbjct:  148 GLLCFKLLGGRMSALAPSPLANLGAFHLRKASLPATIEYATSVERGIIQEFGRLYGCHTCGAKRGVRYHADHMPPKLMASRTDAQFLRNFFGRKTKFRFYPQCESCSNLQGNVVKHWKSTLKMHLLSFRAYHATGLWLIL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig76.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G362_ECTSI1.930e-6251.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVL4_9STRA7.570e-5748.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9ZS53_9STRA1.740e-3535.39Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W7TNU7_9STRA8.070e-3335.02Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A067CVX6_SAPPC9.270e-3337.34Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S4IEL5_9STRA1.180e-3043.04Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A6A3MHG9_9STRA2.600e-2832.14Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A7S2R906_9STRA4.480e-2839.30Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D0NUV7_PHYIT2.120e-2742.96Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A484EB96_BRELC8.580e-2740.71Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig76contigP-wetherbeei_contig76:5599..6813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G362
Model size966
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.7e-64
EggNOG OGs2DZJZ@1|root,2S73D@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_004630.1
Cds size822
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.4423373-UTR-P-wetherbeei_contig76:5598..57371683186990.4423373-UTR-P-wetherbeei_contig76:5598..5737Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig76 5599..5737 +
1683186990.4744153-UTR-P-wetherbeei_contig76:6808..68131683186990.4744153-UTR-P-wetherbeei_contig76:6808..6813Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig76 6809..6813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.453994-CDS-P-wetherbeei_contig76:5737..64791683186990.453994-CDS-P-wetherbeei_contig76:5737..6479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig76 5738..6479 +
1683186990.4639792-CDS-P-wetherbeei_contig76:6728..68081683186990.4639792-CDS-P-wetherbeei_contig76:6728..6808Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig76 6729..6808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig76.6.1prot_P-wetherbeei_contig76.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig76 5738..6808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig76.6.1

>prot_P-wetherbeei_contig76.6.1 ID=prot_P-wetherbeei_contig76.6.1|Name=mRNA_P-wetherbeei_contig76.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp
MPGRWRSSEERQIEVLGYCIEAGARCLAGGSAFFACLVASQALQGALRIS
TGTPLGIPSLIGLATVCGASAAAVGVSEAAGSFLTTGDARKVLSLPQAQA
APENLEALAGVGAFGVAAFRALGGRFHSIAPSRLDSLGSFAHSPFSLRAT
LNYATAQEKVALSKLGEVFGCHSCGGRRGPFHADHMPPVKVVAAANARLW
RRMLRATVSQRFYPQCKACSELQSSAVRNASGAFVYHFRALRPYHATGAL
VVLATVLLAKHCDSQAKAVRKQK*
back to top

mRNA from alignment at P-wetherbeei_contig76:5599..6813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig76.6.1 ID=mRNA_P-wetherbeei_contig76.6.1|Name=mRNA_P-wetherbeei_contig76.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1215bp|location=Sequence derived from alignment at P-wetherbeei_contig76:5599..6813+ (Phaeothamnion wetherbeei SAG_119_79)
CACATTCCCAACAGCTCGAACACCTCTCCTGCCCAAGAAAACCCTTTGCT TCAGAACCCAAACTGTGAAGCACGCGCCGAATCTGACCCGCAGTAGCGGT AGCAGCAGCAAAAGTTGTGAGCAGACATTTCAAAAAAACATGCCTGGACG CTGGAGGAGCAGCGAAGAGCGTCAAATCGAGGTGCTAGGTTACTGCATCG AAGCCGGAGCCCGTTGCCTCGCCGGCGGCTCAGCTTTCTTCGCGTGTTTG GTGGCGTCGCAAGCACTGCAAGGAGCATTGCGCATAAGCACGGGCACGCC GCTCGGCATCCCATCGCTAATCGGACTGGCGACGGTTTGTGGCGCTTCTG CTGCGGCGGTCGGCGTGTCGGAGGCGGCGGGATCCTTCCTTACTACAGGA GACGCGAGAAAGGTTTTGTCACTCCCTCAAGCTCAGGCGGCGCCAGAAAA CCTGGAAGCACTGGCTGGCGTGGGAGCCTTTGGCGTGGCGGCTTTTCGGG CGCTTGGCGGCCGCTTTCACAGCATCGCGCCGAGCCGGTTAGACAGCTTG GGCTCGTTTGCCCACTCGCCCTTTTCGCTAAGGGCGACACTAAACTATGC GACGGCGCAGGAAAAAGTCGCACTCAGCAAGCTGGGCGAGGTGTTCGGCT GCCACTCGTGCGGCGGGCGGCGGGGGCCCTTCCACGCGGACCATATGCCG CCGGTCAAGGTGGTGGCGGCCGCCAATGCTCGGCTCTGGCGGCGCATGCT GCGGGCGACCGTTTCGCAGCGTTTTTATCCGCAGTGTAAGGCATGCTCGG AGCTGCAGAGCTCTGCTGTGCGCAACGCCAGCGGTGCGTTCGTCTATCAC TTTCGCGCGCTACGCCCGTACCACGCCACAGGTCGGTGTTCTATCCTTCT GCACTTAAACTTCGTTTGCGGTCTTAATTTGTGTGCTCGAAGGTGGGGTG GGTTTGGCGTGGAGTCTTGCAGTGGAGTTTCATCTTCCTTCTGCGTACTG TACGAAATTTGCTCCACTCTCGCTCGTTCTTGGGTCTTTCATTATCAAAT TGCTACCACCCGCCGGAGATGGAGCCAACCCATCCTTATGATGCTTGTCT TCCTTCCATCCGCACGGTCATTTTTGGCAGGCGCATTGGTGGTTCTGGCA ACAGTGCTATTGGCGAAGCACTGCGACAGCCAAGCAAAGGCCGTGAGGAA ACAGAAATAATGAGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig76:5599..6813+

>mRNA_P-wetherbeei_contig76.6.1 ID=mRNA_P-wetherbeei_contig76.6.1|Name=mRNA_P-wetherbeei_contig76.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig76:5599..6813+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGGACGCTGGAGGAGCAGCGAAGAGCGTCAAATCGAGGTGCTAGG
TTACTGCATCGAAGCCGGAGCCCGTTGCCTCGCCGGCGGCTCAGCTTTCT
TCGCGTGTTTGGTGGCGTCGCAAGCACTGCAAGGAGCATTGCGCATAAGC
ACGGGCACGCCGCTCGGCATCCCATCGCTAATCGGACTGGCGACGGTTTG
TGGCGCTTCTGCTGCGGCGGTCGGCGTGTCGGAGGCGGCGGGATCCTTCC
TTACTACAGGAGACGCGAGAAAGGTTTTGTCACTCCCTCAAGCTCAGGCG
GCGCCAGAAAACCTGGAAGCACTGGCTGGCGTGGGAGCCTTTGGCGTGGC
GGCTTTTCGGGCGCTTGGCGGCCGCTTTCACAGCATCGCGCCGAGCCGGT
TAGACAGCTTGGGCTCGTTTGCCCACTCGCCCTTTTCGCTAAGGGCGACA
CTAAACTATGCGACGGCGCAGGAAAAAGTCGCACTCAGCAAGCTGGGCGA
GGTGTTCGGCTGCCACTCGTGCGGCGGGCGGCGGGGGCCCTTCCACGCGG
ACCATATGCCGCCGGTCAAGGTGGTGGCGGCCGCCAATGCTCGGCTCTGG
CGGCGCATGCTGCGGGCGACCGTTTCGCAGCGTTTTTATCCGCAGTGTAA
GGCATGCTCGGAGCTGCAGAGCTCTGCTGTGCGCAACGCCAGCGGTGCGT
TCGTCTATCACTTTCGCGCGCTACGCCCGTACCACGCCACAGGCGCATTG
GTGGTTCTGGCAACAGTGCTATTGGCGAAGCACTGCGACAGCCAAGCAAA
GGCCGTGAGGAAACAGAAATAA
back to top