mRNA_P-wetherbeei_contig7440.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig7440.1.1
Unique Name	mRNA_P-wetherbeei_contig7440.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Match: D8LKQ4_ECTSI (Poly(Rc) binding protien (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ4_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.490e-36
Identity = 83/155 (53.55%), Postives = 97/155 (62.58%), Query Frame = 1

Query:    1 RMLVPNIKVGAVIGKGGSIVKQIREASGAKVTISDSCTALHDDVLEDRTITCTGPFAAVGAAFGMILSHCGVIG--FGDTLGLNGGCGGXXXXXXXXXXXXXXXXXXXXGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEISS 459
            R+L+PN K+GAVIGKGG+I+K IRE SGAKVTISDSCT LH D  +DR +T  G F +V  AF  ILSH G +G      +GL GG                          PD + +  RLL+PN +AGGLIGRGG TIKAIRE SGARIEISS
Sbjct:  104 RVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHGDS-DDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGG-------------------------DPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISS 232

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BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Match: A0A836CIH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.780e-22
Identity = 73/163 (44.79%), Postives = 88/163 (53.99%), Query Frame = 1

Query:    1 RMLVPNIKVGAVIGKGGSIVKQIREASGAKVTISDSCTALHDDVL---------EDRTITCTGPFAAVGAAFGMILSHCGVIGFGDTL-GLNGGCGGXXXXXXXXXXXXXXXXXXXXGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEISS 459
            R+L+PN K+GAVIGKGG+IVK IRE SGA+VTISD+     DD            +R +   G F AV AA G IL+H      G+ L GL     G                           P   R+L+PN++AG LIGRGG TIKAIR+ SGARIEISS
Sbjct:  109 RVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDA----GDDAGWAGGGGPGGGERLVHLVGSFGAVVAALGAILAHAETPSNGEPLPGLAQLVAGGLLSGEAAAAVDAAITVP---------PSAFRMLIPNAKAGALIGRGGTTIKAIRDASGARIEISS 258

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BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Match: A0A835Z8V5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V5_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.490e-19
Identity = 71/162 (43.83%), Postives = 87/162 (53.70%), Query Frame = 1

Query:    1 RMLVPNIKVGAVIGKGGSIVKQIREASGAKVTISDSCTALHDDVL---------EDRTITCTGPFAAVGAAFGMILSHCGVIGFGDTLGLNGGCGGXXXXXXXXXXXXXXXXXXXXGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEISS 459
            R+L+PN K+GAVIGKGG+IVK IRE SGA+VTISD+     DD            +R +   G F AV  AFG IL+H      GD L   G                         L P G     R+L+ +++AG LIGR GATIKAIR+ SGARI+ISS
Sbjct:  297 RVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDA----GDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPSNGDPL--PGLAALVASGMLSGEATSAAALEAALPLPPSGF----RMLISSAKAGALIGRAGATIKAIRDASGARIDISS 448

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BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 7.860e-11
Identity = 48/106 (45.28%), Postives = 56/106 (52.83%), Query Frame = 1

Query:  148 ITCTGPFAAVGAAFGMILSHCGVIG--FGDTLGLNGGCGGXXXXXXXXXXXXXXXXXXXXGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEISS 459
            +T  G F +V  AF  ILSH G +G      +GL GG                          PD + +  RLL+PN +AGGLIGRGG TIKAIRE SGARIEISS
Sbjct:    2 VTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGG-------------------------DPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISS 82

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BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Match: A0A7S3JWP9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWP9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.860e-10
Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 1

Query:    1 RMLVPNIKVGAVIGKGGSIVKQIREASGAKVTISDSCTALHDD--VLEDRTITCTGPFAAVGAAFGMILSHCGVIGFGDTLGLNGGCGGXXXXXXXXXXXXXXXXXXXXGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEISS 459
            ++L+PN KVG VIGKGG+++  IRE+S A + I++     ++   + ++R +T  G FAAV  AF M+  H  V                                    + P  L     +LVP ++ GGLIGR GA+I  +R  SGA +++ +
Sbjct:  159 KLLIPNTKVGIVIGKGGAMINHIRESSKASLDIAEPGQQNNNQSALPQERVLTFNGDFAAVYTAFQMVQQHLSVA-------------------------SQQQDPNNSTVVPPSLIETT-ILVPRNKTGGLIGRSGASINRVRNDSGATVKVGA 287

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BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Match: A0A553NSS8_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NSS8_TIGCA)

HSP 1 Score: 66.2 bits (160), Expect = 8.280e-10
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 1

Query:    1 RMLVPNIKVGAVIGKGGSIVKQIREASGAKVTISDSCTALHDDVLEDRTITCTGPFAAVGAAFGMILSHCGVIGFGDTLGLNGGCGGXXXXXXXXXXXXXXXXXXXXGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEISS 459
            RM++   +VG++IGKGG I+  IRE SGAK+ ISD         + +R +T TG   A+  AF +I        F +        GG       XXXXXXXXXX     G        RL+VP S+ G LIG+GG+ IK IRE SGA I+++S
Sbjct:   20 RMIMSGKEVGSIIGKGGEIINNIREDSGAKIHISDGS-------VPERIVTVTGTTDAILKAFSLICKK-----FEED-------GGTRESPISXXXXXXXXXXTPKQTGV-----TLRLVVPASQCGSLIGKGGSKIKDIRETSGASIQVAS 148

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BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Match: A0A397SEV4_9GLOM (Uncharacterized protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SEV4_9GLOM)

HSP 1 Score: 65.1 bits (157), Expect = 1.560e-9
Identity = 51/154 (33.12%), Postives = 68/154 (44.16%), Query Frame = 1

Query:    1 RMLVPNIKVGAVIGKGGSIVKQIREASGAKVTISDSCTALHDDVLEDRTITCTGPFAAVGAAFGMILSHCGVIGFGDTLGLNGGCGGXXXXXXXXXXXXXXXXXXXXGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEISSQ 462
            R LV   + G +IGKGG  V +IR+ SGAKVTIS+     ++     R +T TGP   V  AF ++          + L                               P+      RLLVP+SR G +IG+GG  IK I+E SGAR   S +
Sbjct:   28 RALVTTKEAGVIIGKGGKNVSEIRDRSGAKVTISEMVQGAYE-----RILTVTGPLDTVAKAFALVARKI----LDENLDTPST--------------------------PNSKSTTIRLLVPHSRMGPVIGKGGCKIKEIQEKSGARCLASEE 146

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BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Match: A0A1D1ZKD6_9ARAE (RNA-binding protein rnc1 n=9 Tax=Eukaryota TaxID=2759 RepID=A0A1D1ZKD6_9ARAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.950e-9
Identity = 51/154 (33.12%), Postives = 68/154 (44.16%), Query Frame = 1

Query:    1 RMLVPNIKVGAVIGKGGSIVKQIREASGAKVTISDSCTALHDDVLEDRTITCTGPFAAVGAAFGMILSHCGVIGFGDTLGLNGGCGGXXXXXXXXXXXXXXXXXXXXGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEISSQ 462
            R LV   + G +IGKGG  V +IR+ SGAKVTIS+     ++     R +T TGP   V  AF ++          + L                               P+      RLLVP+SR G +IG+GG  IK I+E SGAR   S +
Sbjct:  103 RALVTTKEAGVIIGKGGKNVSEIRDRSGAKVTISEMVQGAYE-----RILTVTGPLDTVAKAFALVARKI----LDENLDTPST--------------------------PNSKSTTIRLLVPHSRMGPVIGKGGCKIKEIQEKSGARCLASEE 221

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BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Match: A0A2Z6S4Z1_9GLOM (Uncharacterized protein n=3 Tax=Rhizophagus TaxID=1129544 RepID=A0A2Z6S4Z1_9GLOM)

HSP 1 Score: 65.1 bits (157), Expect = 2.390e-9
Identity = 51/154 (33.12%), Postives = 68/154 (44.16%), Query Frame = 1

Query:    1 RMLVPNIKVGAVIGKGGSIVKQIREASGAKVTISDSCTALHDDVLEDRTITCTGPFAAVGAAFGMILSHCGVIGFGDTLGLNGGCGGXXXXXXXXXXXXXXXXXXXXGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEISSQ 462
            R LV   + G +IGKGG  V +IR+ SGAKVTIS+     ++     R +T TGP   V  AF ++          + L                               P+      RLLVP+SR G +IG+GG  IK I+E SGAR   S +
Sbjct:  103 RALVTTKEAGVIIGKGGKNVSEIRDRSGAKVTISEMVQGAYE-----RILTVTGPLDTVAKAFALVARKI----LDENLDTPST--------------------------PNSKSTTIRLLVPHSRMGPVIGKGGCKIKEIQEKSGARCLASEE 221

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BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Match: A0A397ULE6_9GLOM (Uncharacterized protein n=3 Tax=Diversisporales TaxID=214509 RepID=A0A397ULE6_9GLOM)

HSP 1 Score: 63.9 bits (154), Expect = 4.990e-9
Identity = 50/154 (32.47%), Postives = 68/154 (44.16%), Query Frame = 1

Query:    1 RMLVPNIKVGAVIGKGGSIVKQIREASGAKVTISDSCTALHDDVLEDRTITCTGPFAAVGAAFGMILSHCGVIGFGDTLGLNGGCGGXXXXXXXXXXXXXXXXXXXXGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEISSQ 462
            R LV   + G +IGKGG  V +IR+ SGAKVTIS+     ++     R +T TGP   V  AF ++          + L                               P+      RLLVP++R G +IG+GG  IK I+E SGAR   S +
Sbjct:  107 RALVTTKEAGVIIGKGGKNVSEIRDRSGAKVTISEMVQGAYE-----RILTVTGPLDTVAKAFALVARKV----LDENLDTPST--------------------------PNSKSTTIRLLVPHTRMGPVIGKGGTKIKEIQEKSGARCLASEE 225

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig7440.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LKQ4_ECTSI	1.490e-36	53.55	Poly(Rc) binding protien (Partial) (Fragment) n=1 ...	[more]
A0A836CIH4_9STRA	4.780e-22	44.79	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z8V5_9STRA	1.490e-19	43.83	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5L8U0_9PHAE	7.860e-11	45.28	KH domain-containing protein n=1 Tax=Ectocarpus sp...	[more]
A0A7S3JWP9_9STRA	1.860e-10	30.97	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A553NSS8_TIGCA	8.280e-10	41.18	Uncharacterized protein n=1 Tax=Tigriopus californ...	[more]
A0A397SEV4_9GLOM	1.560e-9	33.12	Uncharacterized protein n=1 Tax=Glomus cerebriform...	[more]
A0A1D1ZKD6_9ARAE	1.950e-9	33.12	RNA-binding protein rnc1 n=9 Tax=Eukaryota TaxID=2...	[more]
A0A2Z6S4Z1_9GLOM	2.390e-9	33.12	Uncharacterized protein n=3 Tax=Rhizophagus TaxID=...	[more]
A0A397ULE6_9GLOM	4.990e-9	32.47	Uncharacterized protein n=3 Tax=Diversisporales Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig7440	contig	P-wetherbeei_contig7440:1913..2374 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D8LKQ4
PFAMs	KH_1
Model size	462
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13210
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.83e-36
EggNOG OGs	KOG1676@1\|root,KOG1676@2759\|Eukaryota
Ec32 ortholog description	K Homology domain, type 1
Ec32 ortholog	Ec-07_004410.1
Description	negative regulation of low-density lipoprotein particle clearance
Cds size	459
COG category	S
BRITE	ko00000,ko03019,ko03041

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186981.6729474-CDS-P-wetherbeei_contig7440:1912..2371	1683186981.6729474-CDS-P-wetherbeei_contig7440:1912..2371	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig7440 1913..2371 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186981.6855772-UTR-P-wetherbeei_contig7440:2371..2374	1683186981.6855772-UTR-P-wetherbeei_contig7440:2371..2374	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig7440 2372..2374 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig7440.1.1	prot_P-wetherbeei_contig7440.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig7440 1913..2371 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig7440:1913..2374-
coding sequence from alignment at P-wetherbeei_contig7440:1913..2374-

protein sequence of mRNA_P-wetherbeei_contig7440.1.1

>prot_P-wetherbeei_contig7440.1.1 ID=prot_P-wetherbeei_contig7440.1.1|Name=mRNA_P-wetherbeei_contig7440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MLVPNIKVGAVIGKGGSIVKQIREASGAKVTISDSCTALHDDVLEDRTIT
CTGPFAAVGAAFGMILSHCGVIGFGDTLGLNGGCGGGGLGGGGSMAGGGG
GGGGSDGLGPDGLPHVCRLLVPNSRAGGLIGRGGATIKAIREHSGARIEI
SSQ

mRNA from alignment at P-wetherbeei_contig7440:1913..2374-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig7440.1.1 ID=mRNA_P-wetherbeei_contig7440.1.1|Name=mRNA_P-wetherbeei_contig7440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig7440:1913..2374- (Phaeothamnion wetherbeei SAG_119_79)
CGCATGCTCGTCCCCAATATTAAGGTCGGCGCTGTCATCGGCAAGGGCGG
CTCCATCGTCAAGCAGATCCGCGAGGCCAGCGGCGCTAAGGTCACCATCA
GCGACTCGTGCACGGCGCTACACGATGACGTGCTGGAGGACCGCACCATC
ACCTGCACAGGGCCGTTCGCCGCTGTCGGCGCCGCCTTTGGAATGATTTT
GAGCCACTGCGGCGTCATCGGCTTCGGCGACACCCTCGGCCTCAACGGCG
GCTGCGGCGGCGGCGGCTTGGGCGGCGGAGGCAGCATGGCCGGCGGTGGC
GGTGGCGGCGGGGGCAGCGATGGGTTGGGGCCGGACGGCCTGCCGCACGT
CTGCCGGCTGCTCGTGCCCAACAGCCGGGCCGGCGGCCTTATCGGGCGGG
GCGGTGCCACCATCAAGGCGATCCGGGAGCACAGCGGCGCGCGCATCGAG
ATCTCCAGCCAG

Coding sequence (CDS) from alignment at P-wetherbeei_contig7440:1913..2374-

>mRNA_P-wetherbeei_contig7440.1.1 ID=mRNA_P-wetherbeei_contig7440.1.1|Name=mRNA_P-wetherbeei_contig7440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig7440:1913..2374- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGTCCCCAATATTAAGGTCGGCGCTGTCATCGGCAAGGGCGGCTC
CATCGTCAAGCAGATCCGCGAGGCCAGCGGCGCTAAGGTCACCATCAGCG
ACTCGTGCACGGCGCTACACGATGACGTGCTGGAGGACCGCACCATCACC
TGCACAGGGCCGTTCGCCGCTGTCGGCGCCGCCTTTGGAATGATTTTGAG
CCACTGCGGCGTCATCGGCTTCGGCGACACCCTCGGCCTCAACGGCGGCT
GCGGCGGCGGCGGCTTGGGCGGCGGAGGCAGCATGGCCGGCGGTGGCGGT
GGCGGCGGGGGCAGCGATGGGTTGGGGCCGGACGGCCTGCCGCACGTCTG
CCGGCTGCTCGTGCCCAACAGCCGGGCCGGCGGCCTTATCGGGCGGGGCG
GTGCCACCATCAAGGCGATCCGGGAGCACAGCGGCGCGCGCATCGAGATC
TCCAGCCAG