mRNA_P-wetherbeei_contig7221.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7221.2.1
Unique NamemRNA_P-wetherbeei_contig7221.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Match: A0A836CD21_9STRA (ARL1, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD21_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.730e-38
Identity = 65/81 (80.25%), Postives = 74/81 (91.36%), Query Frame = 1
Query:    1 LSAQELTAMLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEASALKGKGLFEGFDWLVTCIKGGES 243
            ++ QEL AMLEEEELK+AILLVFANKQDQ G+L A QVSEA+GL E+RSRQW+IQEASA+KGKGLFEGFDWLVTCIKGG +
Sbjct:  104 IAKQELAAMLEEEELKDAILLVFANKQDQPGSLKATQVSEALGLPELRSRQWTIQEASAVKGKGLFEGFDWLVTCIKGGNA 184          
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Match: D7G8D7_ECTSI (ARL1, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D7_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 4.730e-38
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 1
Query:    1 LSAQELTAMLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEASALKGKGLFEGFDWLVTCIKGGES 243
            ++ QEL AMLEEEELK+AILLVFANKQDQ G+L + +VSEA+GL +IR+RQWSIQEASALKGKGLFEGFDWLVTCIKGGE+
Sbjct:  104 IAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKGGEA 184          
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Match: A0A6S9DTD2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9DTD2_HETAK)

HSP 1 Score: 132 bits (333), Expect = 1.310e-37
Identity = 63/75 (84.00%), Postives = 73/75 (97.33%), Query Frame = 1
Query:   10 QELTAMLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEASALKGKGLFEGFDWLVTCIKG 234
            QEL+AMLEEE+L++AILLVFANKQDQ+GALNAAQ+SE++GLSEIR+RQWSIQE SALKG GL+EGFDWLVTCIKG
Sbjct:  107 QELSAMLEEEDLRDAILLVFANKQDQRGALNAAQISESLGLSEIRNRQWSIQETSALKGNGLYEGFDWLVTCIKG 181          
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Match: A0A7S3PDY2_9STRA (Hypothetical protein n=3 Tax=Labyrinthulomycetes TaxID=35131 RepID=A0A7S3PDY2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.140e-36
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 1
Query:    1 LSAQELTAMLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEASALKGKGLFEGFDWLVTCIKGGES 243
            ++ QEL AMLEEEELK++ILLVFANKQD KGALNAAQVSE +GL+ I++RQWSIQE SA KG+GLFEGFDWLVTCIK G+S
Sbjct:  103 IAKQELMAMLEEEELKDSILLVFANKQDMKGALNAAQVSEHLGLATIKNRQWSIQETSATKGRGLFEGFDWLVTCIKSGQS 183          
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Match: A0A1E7FFD0_9STRA (Arl1-family small GTPase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFD0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.420e-36
Identity = 61/74 (82.43%), Postives = 70/74 (94.59%), Query Frame = 1
Query:   13 ELTAMLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEASALKGKGLFEGFDWLVTCIKG 234
            EL AMLEE+ELK++ILLVFANKQDQKGA+NA Q+S+A+GL +IR+RQWSIQE SALKGKGLFEGFDWLVTCIKG
Sbjct:  108 ELAAMLEEDELKDSILLVFANKQDQKGAMNAQQISDALGLPDIRNRQWSIQETSALKGKGLFEGFDWLVTCIKG 181          
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Match: W7TR65_9STRA (Adp-ribosylation factor 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR65_9STRA)

HSP 1 Score: 128 bits (322), Expect = 7.200e-36
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 LSAQELTAMLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEASALKGKGLFEGFDWLVTCIKGGES 243
            ++ QEL AMLEEEEL+E+ILLVFANKQDQKGALNA+Q+SEA+GLS +RSRQWSIQE SA KGKGLFEGFDWL T I GG +
Sbjct:  107 IAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILGGNT 187          
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Match: A0A7S3DQ25_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQ25_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.890e-35
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 1
Query:   13 ELTAMLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEASALKGKGLFEGFDWLVTCIKGGE 240
            ELTAMLEEE+LK++ILLVFANKQDQKGALNA Q+S+A+GL E+R+RQWSIQE SALKGKG+FEGFDWLVT IKG E
Sbjct:  161 ELTAMLEEEDLKDSILLVFANKQDQKGALNAEQISDALGLPEVRNRQWSIQETSALKGKGMFEGFDWLVTSIKGEE 236          
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Match: B8CE86_THAPS (Adp-ribosylation factor 1 n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8CE86_THAPS)

HSP 1 Score: 126 bits (317), Expect = 3.680e-35
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 1
Query:   13 ELTAMLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEASALKGKGLFEGFDWLVTCIKGGE 240
            EL AMLEEEEL+ +ILLVFANKQDQKGALNA Q+S+A+GL E+R+RQWSIQE SAL+GKGLFEGFDWLV CIKG E
Sbjct:  108 ELAAMLEEEELQNSILLVFANKQDQKGALNAQQISDALGLPEVRNRQWSIQETSALQGKGLFEGFDWLVACIKGVE 183          
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Match: A0A6U1B3M7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1B3M7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.740e-34
Identity = 61/78 (78.21%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   10 QELTAMLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEASALKGKGLFEGFDWLVTCIKGGES 243
            QEL AMLEEEELK+AILL+FANKQDQKGAL A  +SEA+ L+EIR+RQWSIQE  ALKG GLFEGFDWLV CI GGE+
Sbjct:  138 QELQAMLEEEELKDAILLLFANKQDQKGALGAQDISEALKLTEIRNRQWSIQETCALKGNGLFEGFDWLVMCISGGEA 215          
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Match: A0A7S2DEW5_9STRA (Hypothetical protein n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2DEW5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.170e-33
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 1
Query:   10 QELTAMLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEASALKGKGLFEGFDWLVTCIKGGE 240
            QEL AMLEEEELK++ILLVFANKQDQ GAL A  VSEA+ L +IR+RQWSIQE  ALKGKGLFEGFDWLV CIKGG+
Sbjct:  107 QELQAMLEEEELKDSILLVFANKQDQSGALGAQGVSEALRLPDIRNRQWSIQETCALKGKGLFEGFDWLVMCIKGGD 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7221.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CD21_9STRA4.730e-3880.25ARL1, ARF-like ras superfamily GTPase n=1 Tax=Trib... [more]
D7G8D7_ECTSI4.730e-3880.25ARL1, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
A0A6S9DTD2_HETAK1.310e-3784.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3PDY2_9STRA2.140e-3677.78Hypothetical protein n=3 Tax=Labyrinthulomycetes T... [more]
A0A1E7FFD0_9STRA4.420e-3682.43Arl1-family small GTPase n=1 Tax=Fragilariopsis cy... [more]
W7TR65_9STRA7.200e-3677.78Adp-ribosylation factor 3 n=2 Tax=Monodopsidaceae ... [more]
A0A7S3DQ25_9STRA1.890e-3581.58Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
B8CE86_THAPS3.680e-3580.26Adp-ribosylation factor 1 n=15 Tax=Bacillariophyta... [more]
A0A6U1B3M7_9STRA4.740e-3478.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DEW5_9STRA1.170e-3379.22Hypothetical protein n=2 Tax=Dictyochophyceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7221contigP-wetherbeei_contig7221:2075..3027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr8659
PFAMsArf
Model size246
Max annot lvl2836|Bacillariophyta
KEGG koko:K07942
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.1e-36
EggNOG OGsCOG1100@1|root,KOG0072@2759|Eukaryota,2XB8T@2836|Bacillariophyta
Ec32 ortholog descriptionARL1, ARF-like Ras superfamily GTPase
Ec32 orthologEc-19_004070.1
DescriptionBelongs to the small GTPase superfamily. Arf family
Cds size222
COG categoryU
BRITEko00000,ko04031,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186966.7042654-CDS-P-wetherbeei_contig7221:2074..21081683186966.7042654-CDS-P-wetherbeei_contig7221:2074..2108Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7221 2075..2108 -
1683186966.71885-CDS-P-wetherbeei_contig7221:2504..26051683186966.71885-CDS-P-wetherbeei_contig7221:2504..2605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7221 2505..2605 -
1683186966.7298844-CDS-P-wetherbeei_contig7221:2916..30031683186966.7298844-CDS-P-wetherbeei_contig7221:2916..3003Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7221 2917..3003 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186966.73793-UTR-P-wetherbeei_contig7221:3003..30271683186966.73793-UTR-P-wetherbeei_contig7221:3003..3027Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7221 3004..3027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7221.2.1prot_P-wetherbeei_contig7221.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7221 2075..3003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7221.2.1

>prot_P-wetherbeei_contig7221.2.1 ID=prot_P-wetherbeei_contig7221.2.1|Name=mRNA_P-wetherbeei_contig7221.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
MLEEEELKEAILLVFANKQDQKGALNAAQVSEAMGLSEIRSRQWSIQEAS
ALKGKGLFEGFDWLVTCIKGGES*
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mRNA from alignment at P-wetherbeei_contig7221:2075..3027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7221.2.1 ID=mRNA_P-wetherbeei_contig7221.2.1|Name=mRNA_P-wetherbeei_contig7221.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=953bp|location=Sequence derived from alignment at P-wetherbeei_contig7221:2075..3027- (Phaeothamnion wetherbeei SAG_119_79)
CTATCTGCACAGGAGCTGACGGCGATGCTGGAGGAGGAGGAGCTCAAGGA GGCCATCCTGCTAGTCTTTGCCAACAAGCAGGACCAGAAGGGTGCATTGA ACGCCGCACAGGTACTTTCGGTTGCTGTTTCATGCAGGCCCCAAAACCGG CCGTTGCACATTTGAAACCGTCTGTATTTTGGTATCGAAGCGTGCTTCTT TTCACCTTTTTTTATGAAGTCTCTGATGTTTCATGCGAATGCCGAAAGCC GTTTCACCGACGTAGGCTGTTGTTTGCAGCCTGGTTTCACGCCGACCTCT CTCGTCCTTTGCTGCAACCCGTCTATCTGCCTGATGGGCCCGCTGAACTG AACCATACGAGCTTCTGTCTCCGGTACTGCTTGTGAATTGGTGTTTCGGC CCGGTGTTTGTGCCCCGCACAGGTTTCGGAGGCGATGGGGCTCTCGGAGA TCCGCAGCCGACAATGGTCCATCCAGGAGGCGTCGGCGCTCAAGGGCAAG GGCCTCTTTGAGGGCTTCGATTGGTGAGGGAGCGAAGATAGGCATTTCCC GCCGCCCTTTCGTGATAGGGGGTTTATCCGTTGTTTGCGTTGGCGTTGTA ATTCCTTGTTTCCTGCCGCGTCTTCGCTGCTGTATTCTATATGTGGATGT TTTCGTTGCTTGTAGTGCTTCGGCTAAGGGCTGTATCGCCGACATTCGCT TTGTGGTGGTTGGTTGCGGTGCTGGTGTCGCCATTGCTTCGTGCTGCTTC TGCTGCGGCGGTCGCTGCAGCTGCGAAGGCTGGCATATGTCTTTGCACCG CCACCACTGCCGCTATAGCCGCCTAATAGCACTCCTTGATTCGATTTTCT CTCTTATCGCTTCACTTCGCTCATTTTTAATCCACGCCGTTTTGCACCAC TCCTGGCGCACCACGCCAGGCTGGTGACGTGCATCAAAGGCGGAGAATCA TAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7221:2075..3027-

>mRNA_P-wetherbeei_contig7221.2.1 ID=mRNA_P-wetherbeei_contig7221.2.1|Name=mRNA_P-wetherbeei_contig7221.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig7221:2075..3027- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGAGGAGGAGGAGCTCAAGGAGGCCATCCTGCTAGTCTTTGCCAA
CAAGCAGGACCAGAAGGGTGCATTGAACGCCGCACAGGTTTCGGAGGCGA
TGGGGCTCTCGGAGATCCGCAGCCGACAATGGTCCATCCAGGAGGCGTCG
GCGCTCAAGGGCAAGGGCCTCTTTGAGGGCTTCGATTGGCTGGTGACGTG
CATCAAAGGCGGAGAATCATAA
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