mRNA_P-wetherbeei_contig715.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig715.3.1
Unique NamemRNA_P-wetherbeei_contig715.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Match: A0A835YSI8_9STRA (Tha4/Hcf106 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.190e-23
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   97 VRMGFFGLGAPEIAVIVVVAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERT--TKVRKDDPAQVDDAE 321
            V MG FGLGAPEIAVI+VVAA++LGP+KLT  AKD GKMAGELKEVPKEFQAGI+EGE +  T+++K    +  DAE
Sbjct:   66 VSMGLFGLGAPEIAVIIVVAALVLGPEKLTSFAKDAGKMAGELKEVPKEFQAGIDEGEASMKTQMKKAKQLEPQDAE 142          
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Match: D7G5Q7_ECTSI (Tha4/Hcf106 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5Q7_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.190e-23
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   70 GASASGAGAVRMGFFGLGAPEIAVIVVVAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERTT 279
            G  +SGA    MG FGLGAPEIAV + VAA+ILGPDK+ G AKD+GKMAGELK+VPKEFQAG+EEGE  T
Sbjct:   72 GRPSSGASTTTMGLFGLGAPEIAVCIAVAALILGPDKMAGFAKDMGKMAGELKDVPKEFQAGVEEGEAKT 141          
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Match: A0A7S2XUZ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUZ2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.170e-21
Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 1
Query:   85 GAGAVRMGFFGLGAPEIAVIVVVAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERTTKV 285
            G  +++MG FGLGAPEIAV V+VAA++LGPDKL   A+DVGKMAGELKEVPKEFQ G+EEG+   ++
Sbjct:   61 GRSSIQMGLFGLGAPEIAVCVIVAALVLGPDKLISSARDVGKMAGELKEVPKEFQKGLEEGKEAARL 127          
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Match: A0A7S4A8R7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A8R7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.080e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  103 MGFFGLGAPEIAVIVVVAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERTTKVRKD 294
            MG FGLGAPE+ +I+V AA +LGPDKL  L KD GK+AGELKEVPKEFQAG+ EGE + K  KD
Sbjct:   64 MGLFGLGAPEVGIILVAAAFLLGPDKLASLGKDAGKIAGELKEVPKEFQAGLAEGEASAKAMKD 127          
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Match: A0A7S2K8J1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8J1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.750e-20
Identity = 49/76 (64.47%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   64 PRGASASGAGAVRMGFFGLGAPEIAVIVVVAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERTTKVRK 291
            PR  +AS       G FGLG PEIA+I+V AA +LGP+KL  L KD GKMAGELKEVPKEFQAGIEEGE+  K  K
Sbjct:   77 PRTCAASQRQTQLHGLFGLGGPEIAIILVAAAFLLGPEKLAELGKDAGKMAGELKEVPKEFQAGIEEGEKNAKAMK 152          
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Match: A0A448ZFG6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFG6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.620e-19
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  103 MGFFGLGAPEIAVIVVVAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERTTKVRKD 294
            MG FGLGAPEI +++V AA +LGPDKL  L KD GK+AGELKEVPKEFQAG+ EGE + K  K+
Sbjct:   61 MGLFGLGAPEIGIVLVAAAFLLGPDKLASLGKDAGKIAGELKEVPKEFQAGMAEGEASAKAMKE 124          
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Match: A0A7S2VF94_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VF94_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.230e-18
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  103 MGFFGLGAPEIAVIVVVAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERTTKVRK 291
            MG FGLG PEI VI+V AA +LGP KL  L KD GK+AGELKEVPKEFQ G+EEGE   KV K
Sbjct:   62 MGLFGLGVPEIGVILVAAAFVLGPQKLAELGKDAGKIAGELKEVPKEFQKGLEEGEAQAKVIK 124          
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Match: A0A8J9TU44_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TU44_PHATR)

HSP 1 Score: 81.6 bits (200), Expect = 2.530e-18
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  103 MGFFGLGAPEIAVIVVVAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERTTKVRKDDPAQVDDAE 321
            MG FGLG PE+AVI + AA +LGP KL  L KD GK+AGELKEVP EFQ G++EGE   K  KD+ +  +D E
Sbjct:    1 MGLFGLGVPELAVIAIAAAFLLGPQKLAELGKDAGKIAGELKEVPAEFQKGLQEGETKAKSLKDEISVKEDEE 73          
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Match: A0A7S2SMJ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMJ0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.110e-18
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1
Query:   97 VRMGFFGLGAPEIAVIVVVAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERTTKVRKDDPA 303
            V MG FGLGAPEIAVIV VA  +LGP KL  +A+D+GK+AGELK+VP+EFQ G+ EGE+  K  K D A
Sbjct:   97 VTMGLFGLGAPEIAVIVGVAGFVLGPQKLAEMARDMGKVAGELKDVPREFQEGLSEGEKEAKALKGDVA 165          
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Match: A0A1E7F4Y7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4Y7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.610e-18
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  103 MGFFGLGAPEIAVIVVVAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERTTKVRK 291
            MG FGLGAPE+ +I+V AA +LGPDKL    KD GK+AGELKEVPKEFQAG+ EGE   K  K
Sbjct:   63 MGLFGLGAPEVGIILVAAAFLLGPDKLAEFGKDAGKIAGELKEVPKEFQAGMAEGEANAKKMK 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig715.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSI8_9STRA2.190e-2368.83Tha4/Hcf106 protein n=1 Tax=Tribonema minus TaxID=... [more]
D7G5Q7_ECTSI4.190e-2371.43Tha4/Hcf106 protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S2XUZ2_9STRA6.170e-2167.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4A8R7_9STRA3.080e-2068.75Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2K8J1_9STRA5.750e-2064.47Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448ZFG6_9STRA1.620e-1967.19Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2VF94_9STRA2.230e-1869.84Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A8J9TU44_PHATR2.530e-1858.90Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S2SMJ0_9STRA5.110e-1863.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1E7F4Y7_9STRA5.610e-1866.67Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig715contigP-wetherbeei_contig715:2710..3033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr52200
PFAMsMttA_Hcf106
Model size324
Max annot lvl2836|Bacillariophyta
KEGG koko:K03116
KEGG TC2.A.64
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00336
Hectar predicted targeting categorysignal anchor
Exons1
Evalue4.14e-19
EggNOG OGs29P47@1|root,2RWFK@2759|Eukaryota,2XDQB@2836|Bacillariophyta
Ec32 ortholog descriptionTha4/Hcf106 protein
Ec32 orthologEc-12_008760.1
DescriptionmttA/Hcf106 family
Cds size324
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186961.8245618-CDS-P-wetherbeei_contig715:2709..30331683186961.8245618-CDS-P-wetherbeei_contig715:2709..3033Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig715 2710..3033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig715.3.1prot_P-wetherbeei_contig715.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig715 2710..3033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig715.3.1

>prot_P-wetherbeei_contig715.3.1 ID=prot_P-wetherbeei_contig715.3.1|Name=mRNA_P-wetherbeei_contig715.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
PPSLRSSAFAPRCAATVAPMRPRGASASGAGAVRMGFFGLGAPEIAVIVV
VAAVILGPDKLTGLAKDVGKMAGELKEVPKEFQAGIEEGERTTKVRKDDP
AQVDDAE*
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mRNA from alignment at P-wetherbeei_contig715:2710..3033+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig715.3.1 ID=mRNA_P-wetherbeei_contig715.3.1|Name=mRNA_P-wetherbeei_contig715.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig715:2710..3033+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCCTCCCTCAGGTCCAGCGCATTTGCACCACGCTGCGCTGCCACCGT CGCGCCAATGCGGCCACGCGGCGCCTCCGCGAGCGGCGCGGGCGCGGTGC GTATGGGCTTCTTCGGCCTCGGCGCGCCGGAGATTGCCGTCATTGTCGTC GTCGCAGCGGTGATTCTCGGCCCCGACAAGCTGACGGGGCTCGCGAAGGA CGTCGGCAAGATGGCGGGCGAGCTGAAGGAAGTCCCGAAAGAATTCCAGG CGGGCATCGAAGAGGGGGAACGGACCACCAAGGTTCGGAAGGACGACCCT GCCCAGGTCGACGACGCCGAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig715:2710..3033+

>mRNA_P-wetherbeei_contig715.3.1 ID=mRNA_P-wetherbeei_contig715.3.1|Name=mRNA_P-wetherbeei_contig715.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig715:2710..3033+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCCTCCCTCAGGTCCAGCGCATTTGCACCACGCTGCGCTGCCACCGT
CGCGCCAATGCGGCCACGCGGCGCCTCCGCGAGCGGCGCGGGCGCGGTGC
GTATGGGCTTCTTCGGCCTCGGCGCGCCGGAGATTGCCGTCATTGTCGTC
GTCGCAGCGGTGATTCTCGGCCCCGACAAGCTGACGGGGCTCGCGAAGGA
CGTCGGCAAGATGGCGGGCGAGCTGAAGGAAGTCCCGAAAGAATTCCAGG
CGGGCATCGAAGAGGGGGAACGGACCACCAAGGTTCGGAAGGACGACCCT
GCCCAGGTCGACGACGCCGAATGA
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