mRNA_P-wetherbeei_contig7063.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7063.1.1
Unique NamemRNA_P-wetherbeei_contig7063.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Match: A0A6H5JHA7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.580e-21
Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 1
Query:  256 FFLYILRTEFPDLWEASVLAGDDHAIVCVPQSTSLPA-DVTREDAETHVLLPTA-APGEFMTLNGRRVGLVGNELVTMAGFAEVRRVRLLLTEEL 534
            +FL++LRT+FP++W A+V+AG    ++CVPQSTSL   D+T  +A  HVL P+   PG+F+TL+G  V LVGNE+VT AGF E RRVRLLL+E+L
Sbjct:  101 YFLHMLRTDFPEIW-AAVVAGTVDTVICVPQSTSLSQEDLTAAEARAHVLTPSEEVPGDFLTLDGWSVSLVGNEVVTGAGFPEWRRVRLLLSEDL 194          
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 6.110e-19
Identity = 51/91 (56.04%), Postives = 68/91 (74.73%), Query Frame = 1
Query:  268 ILRTEFPDLWEASVLAGDDHAIVCVPQSTSLPA-DVTREDAETHVLLPTA-APGEFMTLNGRRVGLVGNELVTMAGFAEVRRVRLLLTEEL 534
            +LR +FP++W A+V+AG    ++CVPQSTSL   D+T  +A  HVL P+   PG+F+TL+G  V LVGNE+VT AGF E RRVRLLL+E+L
Sbjct:    1 MLRMDFPEIW-AAVVAGTGDTVICVPQSTSLSQEDLTAAEARAHVLTPSEEVPGDFLTLDGWSVSLVGNEVVTGAGFPEWRRVRLLLSEDL 90          
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Match: A0A7S2FSU3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FSU3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.390e-14
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  244 SDPHFFLYILRTEFPDLWEASVLAGDDHAIVCVPQSTSLPADVTREDAETHVLLPTAAPGEFMTLNGRRVGLVGNEL 474
            S+   FLYILRTE+P+LWE       + A V VP+ST++  D+T  D ETH+L PT  PGE+ T   + V ++GNEL
Sbjct:   47 SEDLLFLYILRTEYPELWET---IEANSATVVVPRSTAIGIDLTLADVETHILYPTKIPGEYRTSRNQCVAIIGNEL 120          
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Match: A0A067BVU2_SAPPC (VPS9 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BVU2_SAPPC)

HSP 1 Score: 64.3 bits (155), Expect = 8.840e-9
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  331 IVCVPQSTSL-PADVTREDAETHVLLPTAAPGEFMTLNGRRVGLVGNELVTMAGFAEVRRVRLLLTEE 531
            +VCVPQS SL  A V+    +TH LLP A  G++ +LNG+++ +VG  + T AGF + R VR+L+TEE
Sbjct:   35 LVCVPQSLSLLTAAVSLSQLQTHFLLPDAQVGQYRSLNGKQIAVVGAHIHTKAGFRDARVVRILMTEE 102          
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Match: A0A067BNK2_SAPPC (VPS9 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BNK2_SAPPC)

HSP 1 Score: 64.3 bits (155), Expect = 1.020e-8
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  331 IVCVPQSTSL-PADVTREDAETHVLLPTAAPGEFMTLNGRRVGLVGNELVTMAGFAEVRRVRLLLTEE 531
            +VCVPQS SL  A V+    +TH LLP A  G++ +LNG+++ +VG  + T AGF + R VR+L+TEE
Sbjct:   35 LVCVPQSLSLLTAAVSLSQLQTHFLLPDAQVGQYRSLNGKQIAVVGAHIHTKAGFRDTRVVRILMTEE 102          
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Match: T0REC7_SAPDV (VPS9 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0REC7_SAPDV)

HSP 1 Score: 64.3 bits (155), Expect = 1.020e-8
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1
Query:  331 IVCVPQSTSL-PADVTREDAETHVLLPTAAPGEFMTLNGRRVGLVGNELVTMAGFAEVRRVRLLLTEE 531
            ++C+PQS SL  A ++R   +TH LLP A  G++ +LNG+++ +VG  + T AGF + R VR+L+TEE
Sbjct:   36 LMCIPQSLSLLTAAISRTQLQTHFLLPDAQVGQYRSLNGKQIAVVGAHIHTKAGFHDARVVRILMTEE 103          
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Match: A0A8K1CEM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEM3_PYTOL)

HSP 1 Score: 63.9 bits (154), Expect = 1.400e-8
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  325 HAIVCVPQSTSLPADV--TREDAETHVLLPTAA-----PGEFMTLNGRRVGLVGNELVTMAGFAEVRRVRLLLTEE 531
            + + CVPQ+ SL ADV  +++D  TH LLP +      PG++ TLNG+ V ++G+++ T  GF E R+VR+LL+E+
Sbjct:   27 NCVFCVPQARSLVADVAVSQDDVFTHFLLPVSRGTEQQPGQYETLNGKTVSIIGSQVHTRRGFDEPRKVRILLSEQ 102          
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Match: A0A662YDJ3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDJ3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.590e-7
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  271 LRTEFPDLWEASVLAGDDHAIVCVPQSTSLPAD--VTREDAETHVLLPTA----------APGEFMTLNGRRVGLVGNELVTMAGFAEVRRVRLLLTEELEL 540
            LR    DL E +  A   + ++CVPQ  SL AD  ++++D  TH L P             PGE+ TLNG++V +VG+ + T  GF + R+VR+L++E+ EL
Sbjct:    6 LRAFSADL-EQTQRALRSNCLLCVPQPRSLVADQAISQDDLYTHFLTPVGFDDDVEDSERRPGEYNTLNGKQVSIVGSHVRTGKGFDDRRQVRILMSEKREL 106          
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Match: A0A662XG25_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XG25_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.450e-7
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  325 HAIVCVPQSTSLPAD--VTREDAETHVLLPTA----------APGEFMTLNGRRVGLVGNELVTMAGFAEVRRVRLLLTEELEL 540
            + ++CVPQ  SL AD  ++++D  TH L P             PGE+ TLNG++V +VG+ + T  GF + R+VR+L++E+ EL
Sbjct:   23 NCLLCVPQPRSLVADQAISQDDLYTHFLTPVGFDDDIEDSERRPGEYNTLNGKQVSIVGSHVHTGKGFTDRRQVRILMSEKREL 106          
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Match: H3HD67_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HD67_PHYRM)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-5
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  331 IVCVPQSTSLPAD--VTREDAETHVLLPTAAP-------GEFMTLNGRRVGLVGNELVTMAGFAEVRRVRLLLTEELEL 540
            + CVPQ  SL AD  +T++   TH L P  A        GE+ TLNG++V +VG+ + T  GF + R+VR+LL+E+ E+
Sbjct:   25 LFCVPQPRSLLADEALTQDVLYTHFLTPAGADDALERRLGEYETLNGKQVAVVGSHIHTGKGFRDRRQVRILLSEKREI 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7063.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JHA7_9PHAE1.580e-2156.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTN1_ECTSI6.110e-1956.04Similar to hect domain and RLD 4 n=1 Tax=Ectocarpu... [more]
A0A7S2FSU3_9STRA3.390e-1448.05Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A067BVU2_SAPPC8.840e-948.53VPS9 domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A067BNK2_SAPPC1.020e-848.53VPS9 domain-containing protein n=1 Tax=Saprolegnia... [more]
T0REC7_SAPDV1.020e-845.59VPS9 domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A8K1CEM3_PYTOL1.400e-843.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662YDJ3_9STRA4.590e-738.24Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662XG25_9STRA5.450e-739.29Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
H3HD67_PHYRM1.320e-541.77Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7063contigP-wetherbeei_contig7063:2292..2850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTN1
PFAMsRCC1,RCC1_2
Model size561
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1e-19
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Descriptionguanyl-nucleotide exchange factor activity
Cds size558
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.527578-CDS-P-wetherbeei_contig7063:2291..28491683186955.527578-CDS-P-wetherbeei_contig7063:2291..2849Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7063 2292..2849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7063.1.1prot_P-wetherbeei_contig7063.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7063 2292..2849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7063.1.1

>prot_P-wetherbeei_contig7063.1.1 ID=prot_P-wetherbeei_contig7063.1.1|Name=mRNA_P-wetherbeei_contig7063.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
RKAHFSVPQHSFERENNALARSFFTRQKLGLLTPMTSAVVYDDNTTQVSP
FCGCFGEDGFSACNALERSRARRRFSSDTRLSDPHFFLYILRTEFPDLWE
ASVLAGDDHAIVCVPQSTSLPADVTREDAETHVLLPTAAPGEFMTLNGRR
VGLVGNELVTMAGFAEVRRVRLLLTEELELTTPVVR
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mRNA from alignment at P-wetherbeei_contig7063:2292..2850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7063.1.1 ID=mRNA_P-wetherbeei_contig7063.1.1|Name=mRNA_P-wetherbeei_contig7063.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=559bp|location=Sequence derived from alignment at P-wetherbeei_contig7063:2292..2850+ (Phaeothamnion wetherbeei SAG_119_79)
AGAAAAGCCCACTTTTCAGTCCCGCAACACTCTTTCGAAAGAGAAAACAA CGCTCTCGCTCGCTCGTTCTTCACGAGACAGAAGCTTGGTCTCTTGACTC CCATGACGTCGGCCGTAGTCTATGATGATAATACAACGCAAGTTTCTCCT TTTTGTGGCTGCTTTGGCGAAGACGGCTTCAGCGCGTGCAATGCGCTGGA ACGCTCGCGAGCCCGCAGGCGCTTCTCGAGCGACACCCGCCTCTCCGACC CGCACTTCTTCCTCTACATCTTGAGGACCGAATTCCCGGACCTCTGGGAA GCGTCTGTCCTCGCCGGGGACGATCACGCCATCGTCTGCGTCCCGCAGTC GACATCCCTGCCGGCGGATGTGACCCGCGAGGACGCCGAGACGCACGTCC TCTTGCCCACCGCTGCCCCAGGAGAGTTCATGACGCTCAACGGGCGCCGC GTCGGCCTCGTCGGCAACGAGCTGGTCACGATGGCGGGCTTTGCAGAGGT GCGACGCGTCCGCTTGCTGCTCACTGAGGAGCTCGAGCTGACGACGCCCG TCGTCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7063:2292..2850+

>mRNA_P-wetherbeei_contig7063.1.1 ID=mRNA_P-wetherbeei_contig7063.1.1|Name=mRNA_P-wetherbeei_contig7063.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig7063:2292..2850+ (Phaeothamnion wetherbeei SAG_119_79)
AGAAAAGCCCACTTTTCAGTCCCGCAACACTCTTTCGAAAGAGAAAACAA
CGCTCTCGCTCGCTCGTTCTTCACGAGACAGAAGCTTGGTCTCTTGACTC
CCATGACGTCGGCCGTAGTCTATGATGATAATACAACGCAAGTTTCTCCT
TTTTGTGGCTGCTTTGGCGAAGACGGCTTCAGCGCGTGCAATGCGCTGGA
ACGCTCGCGAGCCCGCAGGCGCTTCTCGAGCGACACCCGCCTCTCCGACC
CGCACTTCTTCCTCTACATCTTGAGGACCGAATTCCCGGACCTCTGGGAA
GCGTCTGTCCTCGCCGGGGACGATCACGCCATCGTCTGCGTCCCGCAGTC
GACATCCCTGCCGGCGGATGTGACCCGCGAGGACGCCGAGACGCACGTCC
TCTTGCCCACCGCTGCCCCAGGAGAGTTCATGACGCTCAACGGGCGCCGC
GTCGGCCTCGTCGGCAACGAGCTGGTCACGATGGCGGGCTTTGCAGAGGT
GCGACGCGTCCGCTTGCTGCTCACTGAGGAGCTCGAGCTGACGACGCCCG
TCGTCCGC
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