mRNA_P-wetherbeei_contig704.2.6 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig704.2.6
Unique NamemRNA_P-wetherbeei_contig704.2.6
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Match: D7G8M3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M3_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 2.600e-49
Identity = 110/240 (45.83%), Postives = 150/240 (62.50%), Query Frame = 2
Query:  599 GRRQVAEACLDLLLIQILAHNTAAVQEADA--ATDG-EASHSSQQSDG----------NGSQKRGAIQGVPPK--------LSAEQSAALDARIEGLGFEVGYRLVERTCQQRFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVARYAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGLSASVRADFGRDDRDGGPPLPAITITITM 1255
            G R V+E   +LL  +I+A+  A V  + A  ATD   AS +  + +G          +GS   G++    P         L ++Q+  ++ARIE +G+EVGYRLVERTCQ+R++ G+QLE IKF+CK+ W+++F+KQVDKLQTDH+GTFVLKD+NFR  +RYA                  D++A +R+LV RLL  PCGLVRGA+ANLGL A VRA F  DDR G   LPA++ TI +
Sbjct:   18 GNRLVSEPAFELLFSEIIAYTGAYVSHSAASHATDRLRASEAGVEDEGEGEKGGXXXDDGSDTGGSLVEPNPASVGAGHQLLPSDQAQQMEARIESMGYEVGYRLVERTCQRRWMGGDQLEAIKFVCKDLWSDLFKKQVDKLQTDHQGTFVLKDSNFRWTSRYAE-----------------DDTAGSRDLVNRLLQLPCGLVRGALANLGLVAVVRASF-LDDRGGMSDLPAVSFTIKI 239          
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Match: A0A7S2UTW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTW2_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.020e-41
Identity = 79/141 (56.03%), Postives = 100/141 (70.92%), Query Frame = 2
Query:  779 LSAEQSA-ALDARIEGLGFEVGYRLVERTCQQRFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVARYAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGLSASV-RADF 1195
            L +E  A AL  R+EG+GFEVGYR VER  Q+R +  E LE+IKF+CK+FWTEVF+KQVDKLQTDH+GTFVLKD  FR V R+ A                 D+ A  ++LV RLL +PCG++RGA+AN+GL+A+V RADF
Sbjct:    5 LDSEAGAEALAHRLEGMGFEVGYRFVERVAQKRVIPSEPLEIIKFLCKDFWTEVFKKQVDKLQTDHRGTFVLKDAKFRWVLRFVA-----------------DSDATGKQLVARLLQFPCGILRGALANMGLAAAVVRADF 128          
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Match: A0A835ZD08_9STRA (Transport protein particle component, Bet3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD08_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.220e-36
Identity = 74/149 (49.66%), Postives = 97/149 (65.10%), Query Frame = 2
Query:  809 ARIEGLGFEVGYRLVERTCQQRFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVARYAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGLSASVRADFGRDDRDGGPPLPAITITITM 1255
            AR+E LG++VG RL ER CQ + L GE LE +KFICK+FWTEVFRKQ+DKLQTDH+GTFVL++ NF+ +A+YA                  D S  +R L    L + CGLVRGA+A L   A+V+ADF  D++     LPA++ TI +
Sbjct:   66 ARLESLGWDVGCRLTERLCQTKLLSGEPLEAVKFICKDFWTEVFRKQIDKLQTDHRGTFVLRELNFKWLAKYAP-----------------DKSRTDRNLAWFTLQFACGLVRGAMATLNQPATVKADFW-DEKTDRSLLPAVSFTIRL 196          
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Match: F0YPS8_AURAN (Uncharacterized protein n=3 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPS8_AURAN)

HSP 1 Score: 123 bits (308), Expect = 1.470e-29
Identity = 64/149 (42.95%), Postives = 92/149 (61.74%), Query Frame = 2
Query:  809 ARIEGLGFEVGYRLVERTCQQRFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVARYAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGLSASVRADFGRDDRDGGPPLPAITITITM 1255
            +R E  G+EVGYR VER  Q R L  + LEVIKFICK+ W E+F KQ+DKLQT+H+G FVLKD  FR +AR ++                 D++ A + +   +L +PCG++RGA+ANLG+ A+V A++G         LP+ + +I +
Sbjct:   28 SRPELHGYEVGYRFVERIAQARALAADHLEVIKFICKDVWNEIFGKQIDKLQTNHRGVFVLKDYTFRWLARVSS-----------------DDAEAMKRVTANILQFPCGVLRGALANLGIVATVTAEYGT--------LPSCSFSIRI 151          
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Match: B9FWP9_ORYSJ (Os07g0291100 protein n=20 Tax=Oryzeae TaxID=147380 RepID=B9FWP9_ORYSJ)

HSP 1 Score: 122 bits (307), Expect = 3.030e-29
Identity = 65/168 (38.69%), Postives = 99/168 (58.93%), Query Frame = 2
Query:  752 GAIQGVPPKLSAEQSAALDARIEGLGFEVGYRLVERTCQQRFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVARYAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGLSASVRADFGRDDRDGGPPLPAITITITM 1255
            G      P+L+A        RIE +GF+VG++L ER   +R    + LE IKFICK+FW+E+F+KQ+D L+T+H+GTFVL+D +FR + R +   S+    +    +  + +SAA  +    LL +PCG++RGA+ NLG+S SV AD           LPA +  + +
Sbjct:   23 GGFYAAKPELAAR-------RIEAIGFQVGHQLTERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNHFRWLTRVSVDPSVESMDATENDSTTLGDSAA--QTTSMLLYFPCGIIRGALTNLGISCSVTADMSN--------LPACSFVVRI 173          
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Match: A2YKC5_ORYSI (Uncharacterized protein n=9 Tax=Oryza TaxID=4527 RepID=A2YKC5_ORYSI)

HSP 1 Score: 122 bits (306), Expect = 5.560e-29
Identity = 63/148 (42.57%), Postives = 92/148 (62.16%), Query Frame = 2
Query:  752 GAIQGVPPKLSAEQSAALDARIEGLGFEVGYRLVERTCQQRFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVARYAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGLSASVRADF 1195
            G      P+L+A        RIE +GF+VG++L ER   +R    + LE IKFICK+FW+E+FRKQ+D L+T+H+GTFVL+D  FR + R +   S+    +    +  + +SAA  +    LL +PCG++RGA+ NLG+S SV AD 
Sbjct:   23 GGFYAAKPELAAR-------RIEAIGFQVGHQLTERYTMERPRFSDHLEAIKFICKDFWSELFRKQIDNLKTNHRGTFVLQDNRFRWLTRVSVDPSVESMGATENDSTTLGDSAA--QTTSMLLYFPCGIIRGALTNLGISCSVTADM 161          
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Match: A0A3L6QA31_PANMI (Trafficking protein particle complex subunit 6B n=2 Tax=Panicum TaxID=4539 RepID=A0A3L6QA31_PANMI)

HSP 1 Score: 123 bits (309), Expect = 5.960e-29
Identity = 76/202 (37.62%), Postives = 109/202 (53.96%), Query Frame = 2
Query:  752 GAIQGVPPKLSAEQSAALDARIEGLGFEVGYRLVERTCQQRFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVARYAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGLSASVRADFGRDDRDGGPPLPAITITITMGRG---PAVTARR*EGLEWAEWAERAAFTETELV 1348
            G      P+L+A        RIE +GF+VG++L ER   +R    + LE IKFICK+FW+E+F+KQ+D L+T+H+GTFVL+D +FR + R +   S   + +    +  + ++AA  +    LL +PCGL+RGA+ NLG+S SV AD       G   L   +    + RG   P  T R  EG     WA   A   T  V
Sbjct:   23 GRFYAAKPELAAR-------RIEAIGFQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNHFRWLTRVSLDPSAESTDAPDNDSAPLGDTAA--QTTSMLLYFPCGLIRGALTNLGISCSVSADMSNLPAYGAVNLHCTSYINQVKRGYQNPVETIR--EGTIGFAWATLGAAANTYNV 213          
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Match: A0A096UT45_WHEAT (Uncharacterized protein n=12 Tax=Pooideae TaxID=147368 RepID=A0A096UT45_WHEAT)

HSP 1 Score: 121 bits (304), Expect = 8.070e-29
Identity = 64/168 (38.10%), Postives = 100/168 (59.52%), Query Frame = 2
Query:  752 GAIQGVPPKLSAEQSAALDARIEGLGFEVGYRLVERTCQQRFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVARYAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGLSASVRADFGRDDRDGGPPLPAITITITM 1255
            G      P+L+A        RIE +GF+VG++L ER   +R    + LE IKFICK+FW+E+F+KQ+D L+T+H+GTFVL+D +FR + R +   ++  + +    +G + +SAA  +    LL +PCGL+RGA+ NLG+  +V AD           LPA +  + +
Sbjct:   23 GRFYAAKPELAA-------GRIEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNHFRWLTRVSLDPAVESTDATENDSGSLGDSAA--QTTSMLLYFPCGLIRGALTNLGIPCAVSADMSN--------LPACSFVVRI 173          
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Match: M8AD83_TRIUA (Trafficking protein particle complex subunit 6B n=5 Tax=Poaceae TaxID=4479 RepID=M8AD83_TRIUA)

HSP 1 Score: 120 bits (301), Expect = 1.400e-28
Identity = 61/148 (41.22%), Postives = 94/148 (63.51%), Query Frame = 2
Query:  752 GAIQGVPPKLSAEQSAALDARIEGLGFEVGYRLVERTCQQRFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVARYAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGLSASVRADF 1195
            G      P+L+A        RIE +GF+VG++L ER   +R    + LE IKFICK+FW+E+F+KQ+D L+T+H+GTFVL+D +FR + R +   ++  + +    +G + +SAA  +    LL +PCGL+RGA+ NLG+  +V AD 
Sbjct:    9 GRFYAAKPELAA-------GRIEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNHFRWLTRVSLDPAVESTDATENDSGSLGDSAA--QTTSMLLYFPCGLIRGALTNLGIPCAVSADM 147          
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Match: A0A1B6PKD9_SORBI (Uncharacterized protein n=9 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6PKD9_SORBI)

HSP 1 Score: 120 bits (301), Expect = 2.030e-28
Identity = 64/168 (38.10%), Postives = 97/168 (57.74%), Query Frame = 2
Query:  752 GAIQGVPPKLSAEQSAALDARIEGLGFEVGYRLVERTCQQRFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVARYAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGLSASVRADFGRDDRDGGPPLPAITITITM 1255
            G +    P+L+A        RIE +GF+VG++L ER   +R    + LE IKFICK+FW+E+F+KQ+D L+T+H+GTFVL+D  FR + R +       + S    +  + ++AA  +    LL +PCGL+RGA+ NLG+  SV AD           LPA +  + +
Sbjct:   21 GGLYAAKPELAAR-------RIEAIGFQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRVSLDPYTENTDSTENDSAALGDTAA--QTTTMLLYFPCGLIRGALTNLGIPCSVSADMSN--------LPACSFVVRI 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig704.2.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8M3_ECTSI2.600e-4945.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UTW2_9STRA5.020e-4156.03Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZD08_9STRA2.220e-3649.66Transport protein particle component, Bet3 n=1 Tax... [more]
F0YPS8_AURAN1.470e-2942.95Uncharacterized protein n=3 Tax=Aureococcus anopha... [more]
B9FWP9_ORYSJ3.030e-2938.69Os07g0291100 protein n=20 Tax=Oryzeae TaxID=147380... [more]
A2YKC5_ORYSI5.560e-2942.57Uncharacterized protein n=9 Tax=Oryza TaxID=4527 R... [more]
A0A3L6QA31_PANMI5.960e-2937.62Trafficking protein particle complex subunit 6B n=... [more]
A0A096UT45_WHEAT8.070e-2938.10Uncharacterized protein n=12 Tax=Pooideae TaxID=14... [more]
M8AD83_TRIUA1.400e-2841.22Trafficking protein particle complex subunit 6B n=... [more]
A0A1B6PKD9_SORBI2.030e-2838.10Uncharacterized protein n=9 Tax=Andropogoneae TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig704contigP-wetherbeei_contig704:3374..5685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8M3
Preferred nameTRAPPC6B
PFAMsTRAPP
Model size1458
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02321,ko:K04706,ko:K20304
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko04120,ko04630,ko05160,map00230,map00240,map01100,map03030,map04120,map04630,map05160
KEGG ModuleM00261
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000407,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005793,GO:0005794,GO:0005801,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010506,GO:0010508,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016239,GO:0016241,GO:0017016,GO:0017112,GO:0017137,GO:0019222,GO:0019899,GO:0022607,GO:0030008,GO:0031267,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031410,GO:0031503,GO:0031982,GO:0031984,GO:0032438,GO:0032991,GO:0033036,GO:0033059,GO:0034497,GO:0034613,GO:0034629,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043473,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048518,GO:0048522,GO:0048753,GO:0050789,GO:0050794,GO:0051020,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061919,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0090114,GO:0097708,GO:0098772,GO:0098791,GO:0099023,GO:1903232,GO:1905037,GO:1990070,GO:1990071,GO:1990072
Exons4
Evalue4.8e-53
EggNOG OGsKOG3316@1|root,KOG3316@2759|Eukaryota
Ec32 ortholog descriptionNO signalling/Golgi transport ligand-binding domain
Ec32 orthologEc-09_002340.1
DescriptionER to Golgi vesicle-mediated transport
Cds size717
COG categoryS
BRITEko00000,ko00001,ko00002,ko03032,ko04121,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig704.2.6prot_P-wetherbeei_contig704.2.6Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig704 3945..5515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186954.0451918-UTR-P-wetherbeei_contig704:3373..39441683186954.0451918-UTR-P-wetherbeei_contig704:3373..3944Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig704 3374..3944 +
1683186954.0997968-UTR-P-wetherbeei_contig704:5515..56851683186954.0997968-UTR-P-wetherbeei_contig704:5515..5685Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig704 5516..5685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186954.0595953-CDS-P-wetherbeei_contig704:3944..41571683186954.0595953-CDS-P-wetherbeei_contig704:3944..4157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig704 3945..4157 +
1683186954.0691113-CDS-P-wetherbeei_contig704:4287..44371683186954.0691113-CDS-P-wetherbeei_contig704:4287..4437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig704 4288..4437 +
1683186954.0786445-CDS-P-wetherbeei_contig704:4754..49021683186954.0786445-CDS-P-wetherbeei_contig704:4754..4902Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig704 4755..4902 +
1683186954.0887516-CDS-P-wetherbeei_contig704:5309..55151683186954.0887516-CDS-P-wetherbeei_contig704:5309..5515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig704 5310..5515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig704.2.6

>prot_P-wetherbeei_contig704.2.6 ID=prot_P-wetherbeei_contig704.2.6|Name=mRNA_P-wetherbeei_contig704.2.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=239bp
MSGADSGGGGRRQVAEACLDLLLIQILAHNTAAVQEADAATDGEASHSSQ
QSDGNGSQKRGAIQGVPPKLSAEQSAALDARIEGLGFEVGYRLVERTCQQ
RFLVGEQLEVIKFICKEFWTEVFRKQVDKLQTDHKGTFVLKDTNFRLVAR
YAAGASMSRSVSDRTWAGGIDNSAANRELVRRLLLYPCGLVRGAVANLGL
SASVRADFGRDDRDGGPPLPAITITITMGRGPAVTARR*
back to top

mRNA from alignment at P-wetherbeei_contig704:3374..5685+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig704.2.6 ID=mRNA_P-wetherbeei_contig704.2.6|Name=mRNA_P-wetherbeei_contig704.2.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2312bp|location=Sequence derived from alignment at P-wetherbeei_contig704:3374..5685+ (Phaeothamnion wetherbeei SAG_119_79)
CCCAGCAGGAGTCCAGAACGCTGAAAGCGTGCCCAATAACCACAGAATAG TTAAAAATACCCGCGATGCCTGTCCTTCGGCCGATCCCTGCCCAATACCC TATTTCCTAGACGTGGGTGTTCTCCCTGGCCCTAGTTTGGGTTGTACCGA CGGACGCCGCTGGTGTCGTGGGAGCCTCCTATGCCGGTGCTTTTCTTGAG GCGAGGGATCCTCCTCTTGCCAATTCCGAGTCAAAGACGTTCCAGAGACC AGAGACCAGGAGCATATGTAGAAAGTTGGAAGAGGGTTAGGGTTAAGGGG CTTTTACTCGATCGAAAAGGGTCGGTAACAAAAGCAAAAGGAGCGATGCC GCTTTTCTCGCCGCATATGTAGTAAGTTCATCTCATTTGGGCATCCCGCA ACCTTGTGCAGGACTCTGTGATTCTTTTTGGAACTAATCGGGTATTTCAT CGATCAAGTCGGGTCTTGGTGAAGGCGATGAGGATTTTCGTCGGGTTGGG GTACCCGACGAGGAACCCTATGTGTTGTGAAGGAAAGAGAAGCAGGATAG AGGGAAGCATTCTCCTCAACAATGTCGGGGGCAGATTCCGGGGGCGGCGG ACGGAGGCAAGTAGCCGAAGCGTGTCTGGATCTCTTGCTCATCCAAATCT TGGCGCACAACACCGCGGCAGTGCAAGAGGCCGACGCCGCAACAGACGGC GAGGCGTCGCATTCGTCGCAACAGTCAGACGGCAATGGCAGCCAAAAGCG AGGAGCCATCCAAGGAGTGCCGCCAAAGCTCTCGGTAAGGGGAGCTTCAT CCTTCGCGTACGTTCTAAGAAGTGCGGTTTCCAGTCGCCAGCAGACGCAG TGCTGTCTGTCCGGATGCTAGGGTTTCCATCCATAACTTGCATTTTCGAT TTTCCTTGGTGCAGGCAGAGCAATCAGCTGCACTGGATGCTCGAATCGAG GGCTTGGGATTCGAGGTCGGCTACAGGCTAGTGGAGCGAACATGCCAACA GCGATTTCTCGTCGGCGAGCAGCTGGAGGTTATCAAGTTCATCTGCAAGG AGTTCTGGACAGAGGTGAGACAAACGAGTCGCTGTCACTTGGCAGCCCTT TCTGACCGGCCTTCGCTCTTCTCTGACATACCATTTTAAACCAATCTGGA TCTCTTGGAATGGGGCGTGCAGCTTCACGTCTTCTGGCCCCAAAACCTGC TCAGTAAAATCGTTCTTCACCTCTCTGTTCGCGGAGGTGGCGGCTGCGGC GCTGTTTGTGGTGCTGGGGGTGGCAACGCTGCTCATGGCGCTGGCGGCGG CGGCGCTACTCGTCGCGCTTGCGGCGGCGGCGCTGCTCGGACGGCGATGG CGGCGGCGGCGGTGGCGATTGCCGGCGGCAGGTGTTTCGGAAGCAGGTGG ACAAGCTGCAGACGGACCACAAAGGCACCTTTGTGCTCAAGGACACTAAC TTCCGACTTGTCGCGCGATACGCCGCAGGTGCGTCCATGAGTCGTTCGGT CAGTGACCGGACGTGGGCGGGCGGCATTGGTTAGATTCCGCTGCCAGCCG CGATTTCATACGCCCAGACTATCAGTTAGGACCTCATGATGGGACGGACA GACGGTTGAAGGTTTCTGTATTATTCAGTCTTACTGACGGTTTTCGATGT TTTCTTATATTTTGAAGAACTCTCCTCGCCCGGTCCCCCCCCCCTCCCCC TTGTAGCTTTCGCCTTCCTTTGAGGCGCCCAAGCAACAAGGAGCATCGCG ACAAATCACGTTATGACGCGTCTTTTGTCCCCGTTTTCTCTTGAACAATT CCCTCTGCCTTCGTGCCTCATCTTTCTTGACGTCTGCGCCTGTCGTCTCC CGGTGGGGGCGGTCCTTCGTTGGCGGCGACGGCGGTCGGCCGTGCGCGGC GGGGCAACGGGAACCACAAACGGAACCGCGGAGCAGACAACAGCGCCGCG AACCGGGAGCTGGTGCGGCGGCTTCTCCTCTACCCGTGTGGCCTCGTCCG CGGCGCCGTGGCGAACCTCGGCCTGTCGGCGTCAGTGCGGGCGGACTTCG GCCGCGACGACCGCGACGGTGGCCCGCCGCTGCCCGCCATCACCATCACC ATCACCATGGGGCGGGGGCCCGCGGTCACGGCACGGCGGTGAGAAGGATT GGAATGGGCAGAATGGGCGGAACGGGCTGCCTTTACAGAGACAGAATTGG TGGCCGTTCATGCGTATGTAAATAAATAGGTAGAAGGGTAGGAGTCTACT CCGCACCACAACGGCGCGTGGCACTCTATATAAAAGGACTGAGGTGATCC TCCCGAACTCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig704:3374..5685+

>mRNA_P-wetherbeei_contig704.2.6 ID=mRNA_P-wetherbeei_contig704.2.6|Name=mRNA_P-wetherbeei_contig704.2.6|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=717bp|location=Sequence derived from alignment at P-wetherbeei_contig704:3374..5685+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGGGGCAGATTCCGGGGGCGGCGGACGGAGGCAAGTAGCCGAAGC
GTGTCTGGATCTCTTGCTCATCCAAATCTTGGCGCACAACACCGCGGCAG
TGCAAGAGGCCGACGCCGCAACAGACGGCGAGGCGTCGCATTCGTCGCAA
CAGTCAGACGGCAATGGCAGCCAAAAGCGAGGAGCCATCCAAGGAGTGCC
GCCAAAGCTCTCGGCAGAGCAATCAGCTGCACTGGATGCTCGAATCGAGG
GCTTGGGATTCGAGGTCGGCTACAGGCTAGTGGAGCGAACATGCCAACAG
CGATTTCTCGTCGGCGAGCAGCTGGAGGTTATCAAGTTCATCTGCAAGGA
GTTCTGGACAGAGGTGTTTCGGAAGCAGGTGGACAAGCTGCAGACGGACC
ACAAAGGCACCTTTGTGCTCAAGGACACTAACTTCCGACTTGTCGCGCGA
TACGCCGCAGGTGCGTCCATGAGTCGTTCGGTCAGTGACCGGACGTGGGC
GGGCGGCATTGACAACAGCGCCGCGAACCGGGAGCTGGTGCGGCGGCTTC
TCCTCTACCCGTGTGGCCTCGTCCGCGGCGCCGTGGCGAACCTCGGCCTG
TCGGCGTCAGTGCGGGCGGACTTCGGCCGCGACGACCGCGACGGTGGCCC
GCCGCTGCCCGCCATCACCATCACCATCACCATGGGGCGGGGGCCCGCGG
TCACGGCACGGCGGTGA
back to top