mRNA_P-wetherbeei_contig6932.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6932.2.1
Unique NamemRNA_P-wetherbeei_contig6932.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Match: A0A7S2U9S9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9S9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.580e-21
Identity = 61/157 (38.85%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  146 AEFSSSALSCEVSFLV--TCKPF-----PYFPTLLHLVLKTLVFFSKVVLEAEEAVFSSQCPCCNIETRRPYGELGSVDSTNCCCCVGVGSGLTGGMAVFPGCGCDAALVNEIVAEMKKRQQERGDTAQLLRTEEQAEQMALLHAKMDAVMRQLGVP 595
            ++F    +   ++FL+   C PF     PY  TL+              L+ EE   +    C    +RRPYGELGSVD +NC CC  V SGL     + PGCGCD   V+EIV+++K+R + RGDT Q+ R EEQ +++A L AK+D ++  L +P
Sbjct:    4 SQFEDKEIDASMNFLLWLACCPFTVGAVPYKTTLM--------------LDGEEVNKTDVNLCGKTVSRRPYGELGSVDKSNCLCCYSVTSGLG---EIAPGCGCDEQKVDEIVSDLKQRMKGRGDTGQIARAEEQLDKIAQLEAKVDLILDHLNIP 143          
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Match: A0A7S2EYK2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EYK2_TRICV)

HSP 1 Score: 97.1 bits (240), Expect = 3.840e-20
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  245 TLVFFSKVVLEAEEAVFSSQCPCCNIETRRPYGELGSVDSTNCCCCVGVGSGLTGGMAVFPGCGCDAALVNEIVAEMKKRQQERGDTAQLLRTEEQAEQMALLHAKMDAVMRQLGVP 595
            T+ + +K++LE EE V + Q  C    +RRPYGELGSVD  N CC V   S L     + PGCGCD + V+EIV E+K R + RGDTAQ+ R EEQ +++  L  K+D +M  L +P
Sbjct:   62 TIPYSTKLLLEHEEIVKTDQNLCGKTVSRRPYGELGSVDKGNFCCFVAATSALG---EISPGCGCDNSRVDEIVTELKARMRGRGDTAQIQRAEEQLKRLDDLETKIDLIMDHLEIP 175          
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Match: A0A7S2ME03_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ME03_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.980e-20
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  266 VVLEAEEAVFSSQCPCCNIETRRPYGELGSVDSTNCCCCVGVGSGLTGGMAVFPGCGCDAALVNEIVAEMKKRQQERGDTAQLLRTEEQAEQMALLHAKMDAVMRQLGVP 595
            +VLE EEAV + +  C    +RRPYGELGSVD  NC CCV   S L       PG GC+ A V+EIV E++ R + RGDTAQ+ ++E+Q E++A L  K+D +M  L +P
Sbjct:   38 LVLEKEEAVRTDKSICGASSSRRPYGELGSVDKANCLCCVQATSELG---EFSPGWGCNEATVDEIVRELRTRMKTRGDTAQIQQSEKQLEKLAELETKIDLIMEHLNIP 144          
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Match: A0A7S3F1E5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F1E5_9EUKA)

HSP 1 Score: 94.0 bits (232), Expect = 4.610e-19
Identity = 66/162 (40.74%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  155 SSSALSCEVSFLVTCKPFPYFPTLLHLV----LKTLVFFSKVV-LEAEEAVFSSQCPCCNIETRRPYGELGSVD-STNCCCCVGVGSGLTGGM--AVFPGCGCDAALVNEIVAEMKKRQQERGDTAQLLRTEEQAE-------QMALLHAKMDAVMRQLGVP 595
            S S+++ EV+     +P   FP   ++V    L  LV   + + LE EE V+    PC     R PYG+LGSVD +T C CC+ V S LT G    + PGCGC+ ALV EIVAE+K R + RGDT  + R E+  E        +A L AK+DA++  L +P
Sbjct:    9 SKSSMAKEVAMTSVTEPQAEFPLKHYVVTPGCLCCLVLCPQTLDLEPEEVVYKISSPCDTKVKRMPYGQLGSVDKATACGCCIAVDSNLTPGAEETIAPGCGCETALVEEIVAELKARMKARGDTGNIKRAEQTLEIVAKVQNDVADLTAKVDAILAHLNIP 170          
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Match: A0A7S2LLC8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LLC8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.870e-16
Identity = 49/109 (44.95%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  266 VVLEAEEAVFSSQCPCCNIETRRPYGELGSVDSTNCCCCVGVGSGLTGGMAVFPGCGCDAALVNEIVAEMKKRQQERGDTAQLLRTEEQAEQMALLHAKMDAVMRQLGV 592
            + LEAEE V +    C    +RRPYGELGSVD ++ CC   + S       + PGCGCD   V+  VAE+KKR + RGDT Q+ RTEE  ++   L AK+D +M  L +
Sbjct:   43 IELEAEEVVKTDVLICGKNVSRRPYGELGSVDKSSICCFQALHSNFG---PIMPGCGCDGEKVDFAVAELKKRMKARGDTGQIKRTEELLKKFNALDAKLDLIMDHLKI 148          
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Match: A0A7S0J3X5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J3X5_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 2.040e-15
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 2
Query:  266 VVLEAEEAVFSSQCPCCNIETRRPYGELGSVDS-TNCCCCVGVGSGLTGGMAVFPGCGCDAALVNEIVAEMKKRQQERGDTAQLLRTEEQAE---QMAL----LHAKMDAVMRQLGV 592
            +VLE EEAV + +  C     RRPYGELGSVD  T C CC  V SGL     + PG GC+ ALV+E+V E+K R + RGDT Q+ R E+Q +   Q+ L    L+ K+D +M  L +
Sbjct:   53 LVLEPEEAVMTRKTMCGTNVQRRPYGELGSVDKGTACGCCTNVTSGLG---PISPGWGCEEALVDELVEELKARMKTRGDTGQIKRAEQQLDAITQVQLDIKQLNTKLDVIMAHLQI 166          
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Match: B7G3G8_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G3G8_PHATC)

HSP 1 Score: 82.8 bits (203), Expect = 3.510e-15
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  311 CCNIETRRPYGELGSVDSTNCCCCVGVGSGLTGGMAVFPGCGCDAALVNEIVAEMKKRQQERGDTAQLLRTEEQAEQMALLHAKM 565
            C N  +RRPYGELGSVD   C CC+ V S       + PGCGCDA  V+EIV E+K R + RGDTAQ+LR EE  +++  L AK+
Sbjct:   79 CGNHVSRRPYGELGSVDRGTCLCCISVESAFG---PISPGCGCDAGKVDEIVHELKTRMRLRGDTAQILRAEETLQRLHDLDAKL 160          
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Match: A0A7S3U0M8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3U0M8_EMIHU)

HSP 1 Score: 80.1 bits (196), Expect = 5.520e-14
Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = 2
Query:  260 SKVVLEAEEAVFSSQCPCCNIETRRPYGELGSVDSTN-CCCCVGVGSGLTGGMA-VFPGCGCDAALVNEIVAEMKKRQQERGDTAQLLRTEEQAEQMALLHAKMDAVMRQLGVPP 598
            +K+ L  +EAV +    C +I  +RPY +LGSVDS + C  C  VGS LTG    + PG GC+A LV EIV E+++R+  RG+ AQ+   E+ A  +A  HAK+D ++  +G+ P
Sbjct:   51 TKLELGPDEAVLTKHDCCNHIVQKRPYAQLGSVDSHHECGICWSVGSDLTGRDGRLMPGWGCNAPLVREIVEELQERKLGRGNVAQMRSHEDLAASVAHAHAKLDTILSHMGLEP 165          
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Match: A0A7S1TUR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUR1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.500e-12
Identity = 57/161 (35.40%), Postives = 79/161 (49.07%), Query Frame = 2
Query:  122 GANLHCYMAEFSSSALSCEVSFLVTCKPFPYFPTLLHLVLKTLVFFSKVV-LEAEEAVFSSQCPCCNIETRRPYGELGSVDSTNCCCCVGVGSGLT--GG--MAVFPGCGCDAALVNEIVAEMKKRQQERGDTAQLLRTEEQAEQMALLHAKMDAVMRQLG 589
            G +L   +  ++ +   C+    + C        +L+L L   V  +KV+ LE EEAV +  C  C   +RRPYGELGSVDS   C C GV S L   GG    +  G GCD     EI   M+ R ++RGDT Q+   E         + ++ AV R+LG
Sbjct:   45 GVDLKFDVVTYNVTDTGCQTCCCIMCP-------ILYLPLVPGVMGTKVLTLEEEEAVLTVDCFLCTSRSRRPYGELGSVDSVRYCWCWGVNSNLLLIGGNPWPIIQGWGCDRETAEEIATIMRTRMKQRGDTGQIRMAERN-------YRELQAVRRELG 191          
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Match: A0A7S3LHR4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LHR4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.900e-11
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 2
Query:  281 EEAVFSSQCPCCNIETRRPYGELGSVDSTNCCCCVGVGSGLT-----GG--MAVFPGCGCDAALVNEIVAEMKKRQQERGDTAQLLRTEEQAEQMALLHAKMDAVMRQLGV 592
            E  + +  C C   + + PYGEL  V   +CCC VG  +G       GG  ++++PG GC+A  V EIV E+K RQ  RGD A++   E Q   +A +  K+D +++  G+
Sbjct:   66 EATLKNDSCLCIKSQKKVPYGELAGVGEESCCCFVGFSAGALSPSGDGGQQLSIYPGTGCNADYVREIVEELKARQYHRGDAARMRVAETQNAALARIEGKLDLLLQNAGI 176          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6932.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7S2U9S9_9STRA3.580e-2138.85Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2EYK2_TRICV3.840e-2047.01Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2ME03_9STRA8.980e-2048.18Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3F1E5_9EUKA4.610e-1940.74Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2LLC8_9STRA3.870e-1644.95Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0J3X5_9EUKA2.040e-1546.15Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
B7G3G8_PHATC3.510e-1552.94Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3U0M8_EMIHU5.520e-1442.61Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S1TUR1_9STRA3.500e-1235.40Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3LHR4_9STRA2.900e-1136.04Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6932contigP-wetherbeei_contig6932:1972..3167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLU5
Model size1196
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.39e-26
EggNOG OGs2E66V@1|root,2SCXY@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_003150.1
Cds size495
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186946.8054762-UTR-P-wetherbeei_contig6932:1971..25301683186946.8054762-UTR-P-wetherbeei_contig6932:1971..2530Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6932 1972..2530 -
1683186946.8246372-UTR-P-wetherbeei_contig6932:3025..31671683186946.8246372-UTR-P-wetherbeei_contig6932:3025..3167Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6932 3026..3167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186946.8156993-CDS-P-wetherbeei_contig6932:2530..30251683186946.8156993-CDS-P-wetherbeei_contig6932:2530..3025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6932 2531..3025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6932.2.1prot_P-wetherbeei_contig6932.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6932 2531..3025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6932.2.1

>prot_P-wetherbeei_contig6932.2.1 ID=prot_P-wetherbeei_contig6932.2.1|Name=mRNA_P-wetherbeei_contig6932.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MAEFSSSALSCEVSFLVTCKPFPYFPTLLHLVLKTLVFFSKVVLEAEEAV
FSSQCPCCNIETRRPYGELGSVDSTNCCCCVGVGSGLTGGMAVFPGCGCD
AALVNEIVAEMKKRQQERGDTAQLLRTEEQAEQMALLHAKMDAVMRQLGV
PPVSSHKMSSDRYD*
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mRNA from alignment at P-wetherbeei_contig6932:1972..3167-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6932.2.1 ID=mRNA_P-wetherbeei_contig6932.2.1|Name=mRNA_P-wetherbeei_contig6932.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1196bp|location=Sequence derived from alignment at P-wetherbeei_contig6932:1972..3167- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTCGGCCGTTTGCAGGTCGTGTGGTGCATAACGTGCCCCATCACCTG GGCCGCCATCTTTCCAGGCATCATGGGCACCAAGCACAGTAAGCGATTTG TCTATGATAGAGTTTCTTTGAGGCGCTAATCTTCACTGCTACATGGCTGA GTTTTCTAGTTCAGCTTTGTCTTGCGAGGTTTCCTTCCTCGTAACCTGTA AACCGTTTCCCTACTTCCCCACCTTATTGCACCTCGTGCTAAAAACCCTC GTGTTCTTCTCAAAAGTCGTGCTGGAAGCGGAGGAGGCCGTCTTCTCATC GCAGTGCCCCTGCTGCAACATCGAGACGCGACGGCCCTACGGCGAGCTCG GCTCCGTCGACAGCACCAACTGCTGCTGCTGCGTCGGCGTCGGCAGCGGC TTGACGGGGGGAATGGCCGTCTTCCCCGGCTGCGGCTGCGACGCGGCGCT CGTCAACGAGATAGTCGCCGAGATGAAGAAGCGGCAGCAGGAGCGCGGCG ACACTGCACAGCTGCTGCGGACGGAAGAGCAGGCGGAACAGATGGCGTTG CTGCACGCCAAGATGGACGCCGTCATGCGGCAGCTGGGGGTGCCGCCCGT CTCCAGCCACAAGATGAGCTCCGACCGTTACGACTGAGTCCGTATCGTTT TGGGCGGTGAACGGACGGGCGGGCGGACGGACGGATGGACGGGCTAGGCG GACCGTCCGATGCCGTGCAGTGCGGAGCGAGCACCAACTTGCTGCACTTT CAGATTGCTGTGCGCTGTACGAAATGCTGCACTTATTATTTTATATCGAG CCGGCCGACGACGGCCGTTAGGAGGCACAGGAGCGGCGCGGCATTCGTGG TGAGGGGCCATGTGCACGCCCGCGACCACGGCTCCCAGTTAAGTAATCAC GGGAGGATAATGTGACGAGCATCCGGGCCGGCAACGGGCCAGGATTTAGA ATGTGGCTGCGGCGGGGCAAATCAGGGATGGGGAGGGCATTTTGGCTAAC TAACGGCGAGGCGGTCGGAAAATGGTGATTCCTGTTTCCGAACCGCGCCA TGGTGCCGTCTGCAGGATTTGGCACAAGAGGTTTCGGCCGGGCGGCAGTT GCGCATCGTTGTGGGAAAGGAGCGGAAAGGTAGAGGCACGCACATTTCTG GAAAACAACTTGGTGTTCCGTTGGCGTCATAACATGTGTAAAGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6932:1972..3167-

>mRNA_P-wetherbeei_contig6932.2.1 ID=mRNA_P-wetherbeei_contig6932.2.1|Name=mRNA_P-wetherbeei_contig6932.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig6932:1972..3167- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAGTTTTCTAGTTCAGCTTTGTCTTGCGAGGTTTCCTTCCTCGT
AACCTGTAAACCGTTTCCCTACTTCCCCACCTTATTGCACCTCGTGCTAA
AAACCCTCGTGTTCTTCTCAAAAGTCGTGCTGGAAGCGGAGGAGGCCGTC
TTCTCATCGCAGTGCCCCTGCTGCAACATCGAGACGCGACGGCCCTACGG
CGAGCTCGGCTCCGTCGACAGCACCAACTGCTGCTGCTGCGTCGGCGTCG
GCAGCGGCTTGACGGGGGGAATGGCCGTCTTCCCCGGCTGCGGCTGCGAC
GCGGCGCTCGTCAACGAGATAGTCGCCGAGATGAAGAAGCGGCAGCAGGA
GCGCGGCGACACTGCACAGCTGCTGCGGACGGAAGAGCAGGCGGAACAGA
TGGCGTTGCTGCACGCCAAGATGGACGCCGTCATGCGGCAGCTGGGGGTG
CCGCCCGTCTCCAGCCACAAGATGAGCTCCGACCGTTACGACTGA
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