mRNA_P-wetherbeei_contig6930.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6930.1.2
Unique NamemRNA_P-wetherbeei_contig6930.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Match: D8LL60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL60_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 2.200e-78
Identity = 134/225 (59.56%), Postives = 165/225 (73.33%), Query Frame = 3
Query:  132 TLLGNADFFARCDLVLASASPRRKEIFGLMQLSPRV--VISDFEENLDKKSFARPEDYAVTNARCKAAEVAARLFADRRKAEDGGGGAQNLPVVVVGADTIVDLDGEILEKPRDEQEAHEVLSRLSGRQHLVHSGVAVFTAACGAEQPAAEFCATTRVAFASLSAGEIAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVAALIAEGKV 800
            TLL   DF ++CDLVLAS SPRR EI G+M L+ RV  V+S+FEENLDK SF  P DYA+ NA  KA EVA+R   D       G GA+  P+VVVG+DTIVDLDG ILEKPRD++ A  +LS LSGR+HLVHSGV++FT+  G ++ A  FC TT+V F +LSA EI AYI++ EPMDK+GSYGIQG GGQ V  V+GCYFNVMGFP + F+  +A +I +GK 
Sbjct:   22 TLLAQGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPRDYAIANAEGKAREVASRALLDAE-----GEGAE--PIVVVGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGKA 239          
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Match: A0A836CIZ2_9STRA (Inosine triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ2_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.160e-77
Identity = 139/235 (59.15%), Postives = 165/235 (70.21%), Query Frame = 3
Query:  102 MSAPTVASRSTLLGNADFFARCDLVLASASPRRKEIFGLMQLSPR--VVISDFEENLDKKSFARPEDYAVTNARCKAAEVAARLFADRRKAEDGGGGAQNLPVVVVGADTIVDLDGEILEKPRDEQEAHEVLSRLSGRQHLVHSGVAVFTAACGAEQPAAEFCATTRVAFASLSAGEIAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVAALIAEGKV 800
            MSA T    STLL +  F   C +VLAS SPRRKEIFGLM L  R  V++S+FEE+L K  F +P DYA   A+ KAAEVAA++   R         + N P +VVG+DTIV+LDG ILEKP D Q A  +L  LSGR+HLVHSGVAVFT ACG+ QPAA +  TT V F ++S  EI AY++SGEPMDKAG+YGIQGLGGQ V GVEGCYFNVMGFP ++F   +A LI  GKV
Sbjct:    2 MSAAT-QQHSTLLAHKAFMDGCRVVLASKSPRRKEIFGLMGLDERLEVIVSEFEEDLRKADFPQPGDYAAATAKFKAAEVAAKVLPAR---------SDNRPTIVVGSDTIVELDGTILEKPDDAQHAFRMLKSLSGRRHLVHSGVAVFTGACGSAQPAACWYDTTSVEFLAMSDDEIWAYVESGEPMDKAGAYGIQGLGGQFVKGVEGCYFNVMGFPMSKFGTCLAKLIESGKV 226          
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Match: A0A7S2S2U2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U2_9STRA)

HSP 1 Score: 218 bits (556), Expect = 8.550e-67
Identity = 123/223 (55.16%), Postives = 146/223 (65.47%), Query Frame = 3
Query:  138 LGNADFFARCDLVLASASPRRKEIFGLMQLSP---RVVISDFEENLDKKSFAR---PEDYAVTNARCKAAEVAARLFADRRKAEDGGGGAQNLPVVVVGADTIVDLDGEILEKPRDEQEAHEVLSRLSGRQHLVHSGVAVFTAACGAEQPAAEFCATTRVAFASLSAGEIAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVAALIA 788
            LG+ +  +RC LVLAS SPRR+EIF LM L      +V+SDFEE+L K  F     P+ Y    A  KA  VA ++F+       G G     PV VVGADTIVDLDGE+LEKP  EQ+A   L RLSGR H VHS VA+F++  G  +P   FC TTRV F  LS  EI+AY+ SGEPMDKAGSYGIQGLGGQ V  +EGCYFNVMG P  RF+  +A L+A
Sbjct:   36 LGSIEALSRCRLVLASKSPRRREIFDLMGLDRVGYDIVVSDFEEDLPKSDFPGEDGPQRYCEATATGKARSVAGKIFSQ------GSGTPSANPVFVVGADTIVDLDGEVLEKPSSEQDAAATLRRLSGRAHFVHSSVAIFSSRHGVAEPVISFCETTRVKFGQLSDAEISAYVASGEPMDKAGSYGIQGLGGQFVDQIEGCYFNVMGLPMRRFSTAIAGLVA 252          
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Match: A0A1X6P3D6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3D6_PORUM)

HSP 1 Score: 206 bits (525), Expect = 1.140e-62
Identity = 116/212 (54.72%), Postives = 145/212 (68.40%), Query Frame = 3
Query:  171 LVLASASPRRKEIFGLMQLSPRVVISDFEENLDKKSFARPEDYAVTNARCKAAEVAARLFADRRKAEDGGGGAQNLPVVVVGADTIVDLDGEILEKPRDEQEAHEVLSRLSGRQHLVHSGVAVFTAACGA--EQPAAEFCATTRVAFASLSAGEIAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVAALIAEGKV 800
            +VLAS SPRR+EI  ++ L+  V  S FEENLDK +F  P +YA TNA  KAA V A L A        GGGA   P +V+G+DTIV +DG ILEKPR E  A+E+L+ LSGR+H V S VA+FT +     ++PA  FC  TRV FA LS   IAAYI++GEPMDKAGSYGIQG+GG  +TG+ GCY+NVMGFP + F   VA L+  G++
Sbjct:   15 IVLASGSPRRREILTMLGLAHEVHASAFEENLDKGAFPTPAEYAKTNASSKAAAVVAELAA--------GGGAGRCPDLVIGSDTIVVVDGRILEKPRSEAAAYEMLATLSGREHSVLSAVALFTPSRSEVRDKPATVFCEHTRVRFAPLSPETIAAYIRTGEPMDKAGSYGIQGVGGSFITGITGCYYNVMGFPLHAFTSAVARLLDAGEL 218          
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Match: W7UAS6_9STRA (Acetylserotonin o-methyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAS6_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.570e-61
Identity = 120/247 (48.58%), Postives = 155/247 (62.75%), Query Frame = 3
Query:   96 ISMSAPTVASRSTLLGNADFFARCDLVLASASPRRKEIFGLMQLSPR---VVISDFEENLDKKSFARPEDYAVTNARCKAAEVAARLFADRRKAEDGGGGAQN----LPVVVVGADTIVDLDGEILEKPRDEQEAHEVLSRLSGRQHLVHSGVAVFTA-----ACGAEQPAAEFCATTRVAFASLSAGEIAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVAALIAEGKV 800
            +S +AP+  S + L   + F  + +L+LAS SPRR+EI  LM    +   V+ SDF E+LDK++F  P DYA  NA CKA EVA +LF      + G  G Q        +V+G+DTIVD DG ILEKP D Q A+ +LS LSGR HLVHSGVA++++       G   P   FC T RV FA LS  EI  YI+SGEPMDKAG YGIQGLGGQ+V G+EGCYF VMG P ++ +  +A    + ++
Sbjct:   46 MSAAAPSRTSSTLLPYLSIFKTKVNLILASKSPRRQEILQLMGFDSKDFVVLPSDFPEDLDKRNFINPADYAQKNAECKAQEVATKLFGGSSSGDVGKVGGQRDAGKKTTIVIGSDTIVDRDGIILEKPEDAQHAYAMLSSLSGRTHLVHSGVAIYSSKGPKSGDGIPLPVVSFCETARVDFAPLSEEEIWNYIRSGEPMDKAGGYGIQGLGGQVVRGIEGCYFTVMGMPMHKLSVALAQFAEDDQI 292          
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Match: A0A7S1TQE1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQE1_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.590e-61
Identity = 119/220 (54.09%), Postives = 142/220 (64.55%), Query Frame = 3
Query:  132 TLLGNADFFARCDLVLASASPRRKEIFGLMQLSPRVVISDFEENLDKKSFARPEDYAVTNARCKAAEVAARLFADRRKAEDGGGGAQNLPVVVVGADTIVDLDGEILEKPRDEQEAHEVLSRLSGRQHLVHSGVAVFTAACG--AEQPAAEFCATTRVAFASLSAGEIAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVAALI 785
            TLLG  D       VL SASPRR EIFGLM L P +V+S F E+L K SFA    YA   A  KA EVA RL  D         GAQ  P V+VG+DT+V++DG++LEKP D +EA  +L R+SGR H VHSGVAVF+   G  A  P   F  TT V F  L+  +I  Y+ S EPMDKAG YGIQGLGGQMV G+ GCYFNVMGFP +RF+ ++A L+
Sbjct:    4 TLLGAGDAARSVRWVLGSASPRRAEIFGLMGLQPEIVVSGFAEDLAKSSFATAAAYAEGTATEKAREVAGRLLPDA--------GAQ--PTVIVGSDTVVEIDGDVLEKPGDVEEAKAMLRRMSGRNHFVHSGVAVFSNLGGRDAGAPTMTFAETTEVTFVELTELDIENYVASREPMDKAGGYGIQGLGGQMVCGLSGCYFNVMGFPMHRFSKSMAELL 213          
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Match: A0A7S2UUT0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUT0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.920e-59
Identity = 124/238 (52.10%), Postives = 153/238 (64.29%), Query Frame = 3
Query:  129 STLLGNADFF-ARCDLVLASASPRRKEIFGLMQLSP----RVVISDFEENLDKKSFARPEDYAVTNARCKAAEVAARLFADRRKAEDGGGGAQNLPVVVVGADTIVDLDGEILEKPRDEQEAHEVLSRLSGRQHLVHSGVAVFT----AACGAEQPAAE-----FCATTRVAFASLSAGEIAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVAALIAEGKV 800
            ST+L   ++  + C +VLAS SPRR+EIF +M ++      VV+S+FEENLDK SF  P  YA  NA CKA +V  ++  D  +       A++L VV   ADTIVDL G+ILEKP DEQ A ++LS LSG  HLVHSGVA+FT    A  GA     E     F  TT V    LS  EI AYI++GEPMDK+GSYGIQG+GGQ V GV GCYFNVMGFP +RF+  +A LI   K+
Sbjct:   62 STILDRLEYLKSSCGIVLASQSPRRREIFDMMGINNSFDINVVVSNFEENLDKSSFDNPGIYAQINAECKAQDVYNQIRNDESRH------AKSLAVVA--ADTIVDLRGKILEKPSDEQHAFQMLSELSGTSHLVHSGVALFTRPPVANSGASSEDIEPNIVSFYETTEVEIVPLSEDEIWAYIRTGEPMDKSGSYGIQGIGGQFVKGVRGCYFNVMGFPMHRFSAAMAELIQSKKI 291          
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Match: A0A0G4GLH8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLH8_VITBC)

HSP 1 Score: 196 bits (499), Expect = 9.620e-58
Identity = 118/242 (48.76%), Postives = 152/242 (62.81%), Query Frame = 3
Query:   99 SMSAPTVASRSTLLGNADFFARCD---LVLASASPRRKEIFGLMQLSPRVVISDFEENLDKKSFARPEDYAVTNARCKAAEVAARLFADRRKAEDGGGGAQNLPV-----VVVGADTIVDLDGEILEKPRDEQEAHEVLSRLSGRQHLVHSGVAVFTAACGAEQPAAEFCATTRVAFASLSAGEIAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVAALIAEGKV 800
            S S+   A+ +++LG+  + +  D   ++LAS SPRRKEI GLM L   V  S F E+LD  +F+ P+ YA  NA  KAAEVA       R A   GG  ++        VV+GADTIVDLDG ILEKP +  +A  +LSR+SGR H VH+GVA+FT   G  +P A F  +T+V FA LS  EI +Y+ SGEPMDKAG YGIQGLGG  V  +EGCYFNVMG P +  +  +A L A  ++
Sbjct:   60 SRSSSLSATSTSILGSCFYPSAGDCLRVILASKSPRRKEICGLMGLDVTVYPSTFAEDLDHGAFSSPQSYAAANAAHKAAEVA-------RGALGAGGDDESSTCPPAADVVIGADTIVDLDGVILEKPANHDDAVSMLSRMSGRCHAVHTGVAIFTRRAGPAEPVAHFVESTKVKFAPLSRSEIDSYVASGEPMDKAGGYGIQGLGGMFVESIEGCYFNVMGLPMHHLSKVLAQLDANRQI 294          
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Match: A0A7S0BNY9_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNY9_9RHOD)

HSP 1 Score: 185 bits (469), Expect = 3.680e-54
Identity = 106/210 (50.48%), Postives = 136/210 (64.76%), Query Frame = 3
Query:  171 LVLASASPRRKEIFGLMQLSPRVVISDFEENLDKKSFARPEDYAVTNARCKAAEVAARLFADRRKAEDGGGGAQNLPVVVVGADTIVDLDGEILEKPRDEQEAHEVLSRLSGRQHLVHSGVAVFTAACGAEQPAAEFCATTRVAFASLSAGEIAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVAALIAEGKV 800
            +VLAS SPRR+EI  L++L   VV+S FEENLDK  F+ P +Y + NAR KA EVA RL            G+   P +V+G+DT+V LD +ILEKP  E EA  +L  LS R H V + VA+F     A++ +A F   T V FA L+   I  YI++ EPMDKAG+YGIQG+GG +V GV+GCYFNVMGFP +RFA  +A L+  G V
Sbjct:   28 IVLASQSPRRREILDLLELKHDVVVSGFEENLDKSMFSHPSEYVLENARRKAEEVAKRLI-----------GSDTPPDLVIGSDTVVVLDNKILEKPLSEAEAFTMLKSLSNRNHTVLTSVALFLK--DAKKCSASFYEATNVRFAELNDDLIWEYIRTREPMDKAGAYGIQGIGGSLVKGVDGCYFNVMGFPMHRFATELAELVDRGAV 224          
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Match: C1MWX6_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MWX6_MICPC)

HSP 1 Score: 179 bits (455), Expect = 3.760e-52
Identity = 108/225 (48.00%), Postives = 138/225 (61.33%), Query Frame = 3
Query:  135 LLGNADFFARCDLVLASASPRRKEIFGLMQLSPRVVISDFEENLDKKSFARPEDYAVTNARCKAAEVAARLFADRRKAEDGGGGAQNLPVVVVGADTIVD-LDGEILEKPRDEQEAHEVLSRLSGRQHLVHSGVAVF--TAACGAEQPAAEFCATTRVAFASLSAGEIAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVAALIAEGKV 800
            +L +A+      L+LASASPRRKEI G + L   VV+S+F+E+LDK +F    +YA   A  KA EVA RL  ++             P VV+GADT+V+  DG ILEKP+D  EA ++L  L G  H VH+GV V       G E+    F  TT+V FA L   EIAAYIK+GEP DKAG YGIQG  G  V+ + GCYFNVMGFP ++FA  V+ +I EG +
Sbjct:    2 ILQHAEALCARRLILASASPRRKEILGNLGLKFDVVVSNFDEDLDKSTFTGGAEYASATATHKAMEVATRLEKEKPA-----------PFVVIGADTVVEGPDGAILEKPKDANEAMKMLLSLQGITHQVHTGVGVIFPNNGGGGERLVKTFSETTKVTFAPLGEAEIAAYIKTGEPFDKAGGYGIQGPAGAFVSSISGCYFNVMGFPVHKFADVVSKMIKEGVI 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6930.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL60_ECTSI2.200e-7859.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CIZ2_9STRA1.160e-7759.15Inosine triphosphate pyrophosphatase-like protein ... [more]
A0A7S2S2U2_9STRA8.550e-6755.16Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1X6P3D6_PORUM1.140e-6254.72Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
W7UAS6_9STRA1.570e-6148.58Acetylserotonin o-methyltransferase n=3 Tax=Monodo... [more]
A0A7S1TQE1_9STRA2.590e-6154.09Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2UUT0_9STRA1.920e-5952.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4GLH8_VITBC9.620e-5848.76Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S0BNY9_9RHOD3.680e-5450.48Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
C1MWX6_MICPC3.760e-5248.00Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6930contigP-wetherbeei_contig6930:676..2779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LL60
Preferred nameASMTL
PFAMsDimerisation2,Maf,Methyltransf_2
Model size922
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01868,ko:K06287
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Exons6
Evalue1.38e-79
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota
Ec32 ortholog descriptionMaf-like protein
Ec32 orthologEc-25_000130.1
EC6.1.1.3
Descriptionnucleoside-triphosphate diphosphatase activity
Cds size777
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6930.1.2prot_P-wetherbeei_contig6930.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6930 795..2753 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186946.628711-UTR-P-wetherbeei_contig6930:675..7941683186946.628711-UTR-P-wetherbeei_contig6930:675..794Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6930 676..794 -
1683186946.6890898-UTR-P-wetherbeei_contig6930:2753..27791683186946.6890898-UTR-P-wetherbeei_contig6930:2753..2779Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6930 2754..2779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186946.6402426-CDS-P-wetherbeei_contig6930:794..9541683186946.6402426-CDS-P-wetherbeei_contig6930:794..954Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6930 795..954 -
1683186946.6483214-CDS-P-wetherbeei_contig6930:1294..14521683186946.6483214-CDS-P-wetherbeei_contig6930:1294..1452Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6930 1295..1452 -
1683186946.6572747-CDS-P-wetherbeei_contig6930:1758..18121683186946.6572747-CDS-P-wetherbeei_contig6930:1758..1812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6930 1759..1812 -
1683186946.6652882-CDS-P-wetherbeei_contig6930:1931..21261683186946.6652882-CDS-P-wetherbeei_contig6930:1931..2126Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6930 1932..2126 -
1683186946.6733253-CDS-P-wetherbeei_contig6930:2431..25611683186946.6733253-CDS-P-wetherbeei_contig6930:2431..2561Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6930 2432..2561 -
1683186946.6812036-CDS-P-wetherbeei_contig6930:2673..27531683186946.6812036-CDS-P-wetherbeei_contig6930:2673..2753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6930 2674..2753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6930.1.2

>prot_P-wetherbeei_contig6930.1.2 ID=prot_P-wetherbeei_contig6930.1.2|Name=mRNA_P-wetherbeei_contig6930.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MRLSASRTVLGIIFPYVERSGSRISMSAPTVASRSTLLGNADFFARCDLV
LASASPRRKEIFGLMQLSPRVVISDFEENLDKKSFARPEDYAVTNARCKA
AEVAARLFADRRKAEDGGGGAQNLPVVVVGADTIVDLDGEILEKPRDEQE
AHEVLSRLSGRQHLVHSGVAVFTAACGAEQPAAEFCATTRVAFASLSAGE
IAAYIKSGEPMDKAGSYGIQGLGGQMVTGVEGCYFNVMGFPFNRFAGTVA
ALIAEGKV*
back to top

mRNA from alignment at P-wetherbeei_contig6930:676..2779-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6930.1.2 ID=mRNA_P-wetherbeei_contig6930.1.2|Name=mRNA_P-wetherbeei_contig6930.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2104bp|location=Sequence derived from alignment at P-wetherbeei_contig6930:676..2779- (Phaeothamnion wetherbeei SAG_119_79)
GTTTTTGGATACTTTTTCGAGCTGACATGCGCCTATCCGCTTCAAGAACG GTACTAGGCATCATCTTCCCGTACGTGGAGAGGTCGGGCAGTCGAATCTC AATGAGGTAAGGCCGGACGGAGTCTAAGGAGAACGAAATCCCTGCAATAA CGCGAACCAAAGGCCCCACAACACCGTTTCTGCCCCACTCCTTGCTTTCC CACGGCGCCGGTCAGCAGCGCTCCAACCGTCGCGTCACGGAGCACTCTCC TCGGCAATGCCGACTTCTTTGCTCGATGCGACCTCGTCCTGGCGAGCGCA AGCCCTCGACGAAAAGAGATATTCGGGCTGATGCAGCTCTCGCCAAGGGT GCGCATGTCAGCATGTTCCTCTTGGGTCAGGCTTTTCCCGACGCTCCGAT ATCATAGAGATCTACGGCGATAGTATTGAATAAAGGCTTAGCGCTTGTAA CTTGGAAAGAGCAGCGTAACTCTCACGTATGCATTCCGAAAGCCATCAAG CGAGAGCCTCAAACATTTACGTTGAGCCCAGCCGCAAAAGTAGGGTTTTT ATACCGATTCGTTATCTCACGACAGTCCCCTGTTCTCTTTCTTCCGGCCG GCCCGTTAAACTGATATTCTCATCTTTAACGGTTCCTCTTGCGGCAAGCG CAGGTCGTGATCTCGGACTTTGAGGAAAACCTCGACAAAAAATCGTTCGC GCGGCCGGAGGACTATGCCGTCACCAATGCGCGCTGTAAAGCAGCCGAAG TGGCGGCGCGGCTCTTTGCCGACCGAAGAAAGGCGGAGGACGGCGGCGGC GGCGCACAAAATTTACCCGTCGTCGTTGTGGGGGCAGACACGATTGTGGT GAGGTAGAAGTCTCTCCATTTCTAACCACGAGTCTGCGGAGGCCTTTTCT CTTCTCTTTTTTCGCATAAGATCCGAAAAGAAACAAGGAAGAAACTGCAT TTCTTGATACAAAACAGGATCTGGACGGCGAAATCCTCGAGAAGCCGCGA GACGAGCAAGAGGCGCACGAGGTATGTTTTGGCTGCTTTCGGTGGTATCG CAGGAGCCTGCAATCTGGAGAGCAACCAATCATGCACCAATGTCTGCGAT CGCGCCTCTTCCTTCTTGGAGGGTGATGAAATTTTCTGGCATTGTTTCAA CGTTGCACGTTACCAGTGCGCAACCAAGCTTCTAAAAGTCGCTCTTTCTG TGTTGCCATGCAGAGAGGGCTGGTGGCACCAAAACAACGCGGACCGATCA CAGCATCAGTAAAGGATCCCCAAGTAGTAAGCAGGGAACTCCATGCAACT TCTTTCCCTCGCTCTTCCCACCGCCAGGTACTCTCGCGGCTGAGCGGACG GCAGCATTTGGTGCACTCCGGCGTGGCGGTCTTCACCGCCGCGTGCGGGG CGGAGCAGCCCGCCGCCGAGTTCTGCGCCACTACGCGGGTGGCGTTCGCG TCGCTTTCGGCAGGCGAGATTGCTGCGTACATCAAGTGAGTGTCGTACTT TTTATGATGCAAACTTTGAGGATTTCTTTCAGTGTCGCTTATATATTTCG GGCTAGTTTTTCTCGTTTTCCTTCTCCGGACGTCTGTGCCGGGGAAAATA GGTATGGCTGAGACGACTTTTGCCCTTTTTGGAGCGGTTGGCAGCCACCC GGGAAGTGATCTCGGCCTTGTTGTTTCGGAGTTCTTCATATTCTGACTCA CCTTGGTAGTGATTCTGCGGGGACAATTGACGCCTTGGTTGAGATCTTTT CTTTCGTCCGCCAAACTTTCCTTGGGTTAGAGACAATCATGTTTCATTTT CTGCAAAGTGACCATCTGCTGGCAGGTCGGGCGAGCCGATGGACAAGGCC GGCAGCTACGGGATCCAGGGGCTCGGCGGGCAGATGGTGACGGGCGTGGA AGGCTGCTACTTCAACGTGATGGGCTTCCCCTTCAACCGTTTCGCCGGCA CCGTGGCAGCGCTCATCGCCGAAGGAAAGGTGTAGAGCTAGAGAACGGGG AAGCCAAGTGCGCGGAGGTGACTGGCAGCATTAAAAGAAGACGCCATGCA AGAACCTCTCCAACGACCGACTAGACCTATTAATCAGAGCCGCCCCGATT AATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6930:676..2779-

>mRNA_P-wetherbeei_contig6930.1.2 ID=mRNA_P-wetherbeei_contig6930.1.2|Name=mRNA_P-wetherbeei_contig6930.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig6930:676..2779- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCTATCCGCTTCAAGAACGGTACTAGGCATCATCTTCCCGTACGT
GGAGAGGTCGGGCAGTCGAATCTCAATGAGCGCTCCAACCGTCGCGTCAC
GGAGCACTCTCCTCGGCAATGCCGACTTCTTTGCTCGATGCGACCTCGTC
CTGGCGAGCGCAAGCCCTCGACGAAAAGAGATATTCGGGCTGATGCAGCT
CTCGCCAAGGGTCGTGATCTCGGACTTTGAGGAAAACCTCGACAAAAAAT
CGTTCGCGCGGCCGGAGGACTATGCCGTCACCAATGCGCGCTGTAAAGCA
GCCGAAGTGGCGGCGCGGCTCTTTGCCGACCGAAGAAAGGCGGAGGACGG
CGGCGGCGGCGCACAAAATTTACCCGTCGTCGTTGTGGGGGCAGACACGA
TTGTGGATCTGGACGGCGAAATCCTCGAGAAGCCGCGAGACGAGCAAGAG
GCGCACGAGGTACTCTCGCGGCTGAGCGGACGGCAGCATTTGGTGCACTC
CGGCGTGGCGGTCTTCACCGCCGCGTGCGGGGCGGAGCAGCCCGCCGCCG
AGTTCTGCGCCACTACGCGGGTGGCGTTCGCGTCGCTTTCGGCAGGCGAG
ATTGCTGCGTACATCAAGTCGGGCGAGCCGATGGACAAGGCCGGCAGCTA
CGGGATCCAGGGGCTCGGCGGGCAGATGGTGACGGGCGTGGAAGGCTGCT
ACTTCAACGTGATGGGCTTCCCCTTCAACCGTTTCGCCGGCACCGTGGCA
GCGCTCATCGCCGAAGGAAAGGTGTAG
back to top