mRNA_P-wetherbeei_contig6857.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6857.3.1
Unique NamemRNA_P-wetherbeei_contig6857.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Match: A0A1F4FCE8_9PROT (Long-chain fatty acid--CoA ligase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 TaxID=1797503 RepID=A0A1F4FCE8_9PROT)

HSP 1 Score: 173 bits (439), Expect = 8.790e-49
Identity = 91/166 (54.82%), Postives = 113/166 (68.07%), Query Frame = 1
Query:    1 TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYAPGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGTRLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDRLPALEAVEPGEDMPALLMYTSGTTG 498
            T+R  + R    +PD+  LVAPETGR L++ EL RQA  L R+L  AG   GD++G Y  NGYQ+AA+FLG M GGYV  PLNL++Q +QL YVL H   +++FT  EH  ALA  +  +G  IEVIVID DAP+LFL+DRLPA        + PALLMYTSGTTG
Sbjct:    4 TLRDVLARHLARQPDRPLLVAPETGRTLSYRELDRQARLLARWLRAAGLGRGDKVGLYLPNGYQSAALFLGAMIGGYVIAPLNLLAQRAQLAYVLAHCDCKVLFTSREHEPALAEALALVGRPIEVIVIDADAPALFLDDRLPAGGFGPIASEDPALLMYTSGTTG 169          
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Match: A0A521VD60_9PROT (Long-chain fatty acid--CoA ligase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VD60_9PROT)

HSP 1 Score: 173 bits (439), Expect = 8.790e-49
Identity = 93/166 (56.02%), Postives = 111/166 (66.87%), Query Frame = 1
Query:    1 TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYAPGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGTRLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDRLPALEAVEPGEDMPALLMYTSGTTG 498
            T+R  + R    +PD+T LVAPETGR L++ EL RQA  L R+L  AG  PGD++G Y  NGYQTA +FLG M GGYV  PLNL++Q SQL YVL H   +++FT  EH   LA  +  +   IEVIVID DAP+LFLEDRLP         D PALLMYTSGTTG
Sbjct:    4 TLRGVLARHVARQPDRTLLVAPETGRTLSYRELDRQARLLARWLRLAGLEPGDKVGLYLHNGYQTALLFLGAMLGGYVITPLNLLAQRSQLAYVLAHCDCKVLFTSREHEAMLAEALALVARRIEVIVIDPDAPALFLEDRLPQGGFGPVAADDPALLMYTSGTTG 169          
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Match: A0A1F3Z523_9PROT (Long-chain fatty acid--CoA ligase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_67_12 TaxID=1797483 RepID=A0A1F3Z523_9PROT)

HSP 1 Score: 171 bits (432), Expect = 9.000e-48
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 1
Query:    1 TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYAPGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGTRLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDRLPALEAVEPGEDMPALLMYTSGTTG 498
            T+R  +      +P+ T+LVAPETGR L++ E++RQ+  L R+L  AG   GD++G Y  NGYQTA +FLG M GGYV+ PLNL+SQ SQL YVLEH   +++FT  E+ + L   + A+   IE IVID DAP LFLE RLPA E    G + PALLMYTSGTTG
Sbjct:    4 TLRDVLAGHVARQPEDTFLVAPETGRSLSYREMERQSRLLARWLRAAGLRRGDKVGLYLHNGYQTALLFLGAMVGGYVAAPLNLLSQRSQLAYVLEHCDCKVLFTAREYEKQLGEALAAVKRPIEAIVIDPDAPELFLEQRLPAGEYEPVGAEDPALLMYTSGTTG 169          
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Match: A0A2W5HHD3_9RHOO (Long-chain fatty acid--CoA ligase (Fragment) n=1 Tax=Azospira oryzae TaxID=146939 RepID=A0A2W5HHD3_9RHOO)

HSP 1 Score: 160 bits (406), Expect = 3.450e-47
Identity = 82/166 (49.40%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYAPGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGTRLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDRLPALEAVEPGEDMPALLMYTSGTTG 498
            TVRH +D QA  RP+  YL+APETGR +T+A L+  +  L R+LLG G   GD++     NGYQTA +FLG MYGG+V  P+NL+SQP+QL +VL+HS ++LVF   +  + + A ++ I   I V VIDVDA  +F    +P +   E  E+  ALLMYTSGTTG
Sbjct:    3 TVRHVIDAQAAERPEHLYLIAPETGRGITYARLREHSVALTRYLLGRGLNKGDKVSLMLHNGYQTARLFLGVMYGGFVVSPVNLLSQPTQLRHVLDHSDSKLVFVGTDFEQRVRAMLKEIRRDIAVEVIDVDAEEIFDPAAVPQVPLPEVDEEDDALLMYTSGTTG 168          
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Match: A0A7C2YN21_9PROT (Long-chain fatty acid--CoA ligase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YN21_9PROT)

HSP 1 Score: 169 bits (427), Expect = 5.470e-47
Identity = 86/166 (51.81%), Postives = 112/166 (67.47%), Query Frame = 1
Query:    1 TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYAPGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGTRLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDRLPALEAVEPGEDMPALLMYTSGTTG 498
            T+RH VD +AR +PD  YL+APETGR LT+  L+RQ+ +L R+L G G A GD+I     NGYQTA +F+GTMY G+V  PLNL+SQ SQL YVL+HS  R VFT  E A  ++  +  +   ++ IVI+ +A  +F  D LPA+E  +  ED   LLMYTSGTTG
Sbjct:   10 TIRHYVDTRAREQPDAPYLIAPETGRVLTYEALQRQSRDLARYLRGLGLAKGDKIALMLHNGYQTARLFIGTMYAGFVVAPLNLLSQKSQLAYVLDHSDARAVFTSKELAPRVSQALAEVKREVKTIVIEPNAEEIFDRDALPAVEPFDVTEDDDVLLMYTSGTTG 175          
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Match: UPI001AC8E6CC (Fatty-acyl-CoA synthase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI001AC8E6CC)

HSP 1 Score: 167 bits (422), Expect = 2.700e-46
Identity = 88/166 (53.01%), Postives = 112/166 (67.47%), Query Frame = 1
Query:    1 TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYAPGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGTRLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDRLPALEAVEPGEDMPALLMYTSGTTG 498
            T+R  +DR+A ++PD  YL+APETGR LT+A LKR++++L R+LL  G A GD++ F   NGYQ+A + LG MYGG+V  P+NL+SQ SQL +VLEHS TR VF   E+ + L   ++AI   I VI  DVDA  LF E   PA       ED  ALLMYTSGTTG
Sbjct:    5 TIRQHIDRRAATQPDHPYLIAPETGRTLTYAGLKRESESLTRYLLMLGMAKGDKVSFMLHNGYQSARLLLGAMYGGFVVQPINLLSQHSQLRFVLEHSDTRAVFVASEYRQRLDDALQAIDRPIRVIPTDVDARELFEESAAPAPALPPVDEDDDALLMYTSGTTG 170          
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Match: A0A522VWS2_9PROT (Long-chain fatty acid--CoA ligase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VWS2_9PROT)

HSP 1 Score: 166 bits (420), Expect = 5.300e-46
Identity = 89/166 (53.61%), Postives = 109/166 (65.66%), Query Frame = 1
Query:    1 TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYAPGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGTRLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDRLPALEAVEPGEDMPALLMYTSGTTG 498
            T+R  + R    +PD+  L+APETGR L++ EL RQA  L R+L  AG   GD++G Y  NGYQTA +FLG M GGYV  PLNL++Q SQL YVL H   +++FT  EH  ALA  +  +   IEVIVID DAP+LFL DRLP         + PALLMYTSGTTG
Sbjct:    4 TLRDVLARHVARQPDRVLLLAPETGRTLSYRELDRQARLLARWLRAAGLERGDKVGLYLHNGYQTALLFLGAMIGGYVVAPLNLLAQRSQLAYVLGHCDCKVLFTSREHEAALAEALALLERPIEVIVIDPDAPALFLGDRLPRGGFAPVAAEDPALLMYTSGTTG 169          
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Match: A0A3N5XEA2_9PROT (Long-chain fatty acid--CoA ligase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5XEA2_9PROT)

HSP 1 Score: 164 bits (416), Expect = 1.970e-45
Identity = 83/166 (50.00%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYAPGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGTRLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDRLPALEAVEPGEDMPALLMYTSGTTG 498
            T+RH VDR+A  +P+ T+L+APETG  +++A+L+R + +L RFLLG G   GD++     N YQTA + +G MYGG++  PLNL++QPSQL YVLEHS TR+VFT  E AE L A +  I   I V+ ID DA  +F    LP +   +      ALLMYTSGTTG
Sbjct:    3 TIRHYVDRRAAEQPNATWLIAPETGATMSYAQLQRDSQDLTRFLLGQGLKKGDKVALMLHNSYQTARLLIGVMYGGFMVAPLNLLAQPSQLAYVLEHSDTRVVFTSEEFAERLQAALAGIPREITVVAIDPDATEIFDRSALPGVPLPDVTATDDALLMYTSGTTG 168          
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Match: A0A5C7EFV4_9PROT (AMP-binding protein n=2 Tax=Pelomicrobium methylotrophicum TaxID=2602750 RepID=A0A5C7EFV4_9PROT)

HSP 1 Score: 160 bits (404), Expect = 1.670e-43
Identity = 82/166 (49.40%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYAPGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGTRLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDRLPALEAVEPGEDMPALLMYTSGTTG 498
            TVRH +D QA  RP+  YL+APETGR +T+A L+  +  L R+LLG G   GD++     NGYQTA +FLG MYGG+V  P+NL+SQP+QL +VL+HS ++LVF   +  + + A ++ I   I V VIDVDA  +F    +P +   E  E+  ALLMYTSGTTG
Sbjct:   12 TVRHVIDAQAAERPEHLYLIAPETGRGITYARLREHSVALTRYLLGRGLNKGDKVSLMLHNGYQTARLFLGVMYGGFVVSPVNLLSQPTQLRHVLDHSDSKLVFVGADFEQRVRAMLKEIRRDIAVEVIDVDAEEIFDPAAVPQVLLPEVDEEDDALLMYTSGTTG 177          
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Match: A0A3N5UL30_9DELT (Long-chain fatty acid--CoA ligase (Fragment) n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3N5UL30_9DELT)

HSP 1 Score: 150 bits (379), Expect = 1.130e-41
Identity = 79/167 (47.31%), Postives = 109/167 (65.27%), Query Frame = 1
Query:    1 TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYAPGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGTRLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDR-LPALEAVEPGEDMPALLMYTSGTTG 498
            T+RH +D +A  +PDK +++APE    LT+A+L+  +  L + LL  G   GD+I +  +NGYQT  +FLG MY G+V  PLNL++QPSQLEYVL+HS T+LVF   +  E L     A+   IE++ ID D+P +F +D  L AL   E  E+  ALL+YTSGTTG
Sbjct:    3 TIRHYIDMRAEQQPDKVFMIAPEPELSLTYAQLREDSIELGKQLLKRGLNKGDKISYMLSNGYQTTKIFLGAMYSGFVIAPLNLLAQPSQLEYVLDHSDTKLVFFTEDQRERLEKASGALSREIELMEIDNDSPWIFPKDGDLAALRLPEVEEEDDALLLYTSGTTG 169          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6857.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4FCE8_9PROT8.790e-4954.82Long-chain fatty acid--CoA ligase n=1 Tax=Betaprot... [more]
A0A521VD60_9PROT8.790e-4956.02Long-chain fatty acid--CoA ligase n=1 Tax=Betaprot... [more]
A0A1F3Z523_9PROT9.000e-4853.61Long-chain fatty acid--CoA ligase n=1 Tax=Betaprot... [more]
A0A2W5HHD3_9RHOO3.450e-4749.40Long-chain fatty acid--CoA ligase (Fragment) n=1 T... [more]
A0A7C2YN21_9PROT5.470e-4751.81Long-chain fatty acid--CoA ligase n=1 Tax=Betaprot... [more]
UPI001AC8E6CC2.700e-4653.01Fatty-acyl-CoA synthase n=1 Tax=Burkholderiales ba... [more]
A0A522VWS2_9PROT5.300e-4653.61Long-chain fatty acid--CoA ligase n=2 Tax=Betaprot... [more]
A0A3N5XEA2_9PROT1.970e-4550.00Long-chain fatty acid--CoA ligase n=1 Tax=Betaprot... [more]
A0A5C7EFV4_9PROT1.670e-4349.40AMP-binding protein n=2 Tax=Pelomicrobium methylot... [more]
A0A3N5UL30_9DELT1.130e-4147.31Long-chain fatty acid--CoA ligase (Fragment) n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6857contigP-wetherbeei_contig6857:2779..3276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog388051.AUFE01000005_gene1107
PFAMsAMP-binding,AMP-binding_C,PP-binding
Model size498
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.31e-32
EggNOG OGsCOG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2VNJM@28216|Betaproteobacteria,1K04U@119060|Burkholderiaceae
EC6.2.1.3
DescriptionLong-chain fatty acid--CoA ligase
Cds size498
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186941.8496919-CDS-P-wetherbeei_contig6857:2778..32761683186941.8496919-CDS-P-wetherbeei_contig6857:2778..3276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6857 2779..3276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6857.3.1prot_P-wetherbeei_contig6857.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6857 2779..3276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6857.3.1

>prot_P-wetherbeei_contig6857.3.1 ID=prot_P-wetherbeei_contig6857.3.1|Name=mRNA_P-wetherbeei_contig6857.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
TVRHCVDRQARSRPDKTYLVAPETGRELTFAELKRQADNLCRFLLGAGYA
PGDRIGFYCANGYQTAAVFLGTMYGGYVSVPLNLVSQPSQLEYVLEHSGT
RLVFTDMEHAEALAARVEAIGGGIEVIVIDVDAPSLFLEDRLPALEAVEP
GEDMPALLMYTSGTTG
back to top

mRNA from alignment at P-wetherbeei_contig6857:2779..3276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6857.3.1 ID=mRNA_P-wetherbeei_contig6857.3.1|Name=mRNA_P-wetherbeei_contig6857.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig6857:2779..3276+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGTAAGGCACTGCGTCGACCGGCAGGCACGTTCGCGGCCGGACAAGAC CTACCTGGTCGCGCCCGAGACGGGACGTGAACTCACGTTCGCGGAGCTGA AGCGGCAGGCGGACAACCTGTGCCGCTTCCTGCTCGGCGCCGGCTACGCG CCCGGCGACCGGATCGGCTTCTACTGCGCGAACGGCTACCAGACCGCCGC CGTTTTCCTCGGCACGATGTACGGCGGATACGTGTCGGTGCCGCTGAACC TGGTTTCCCAGCCTTCCCAGCTCGAATACGTGCTCGAGCATTCCGGCACG CGGCTGGTGTTCACCGACATGGAGCATGCCGAAGCGCTGGCGGCCCGGGT CGAGGCGATCGGAGGCGGCATCGAGGTCATCGTGATCGACGTCGATGCGC CCAGCCTGTTCCTCGAGGACCGCCTTCCCGCACTCGAGGCAGTTGAACCC GGGGAGGACATGCCTGCGCTCCTGATGTACACCTCCGGCACCACGGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6857:2779..3276+

>mRNA_P-wetherbeei_contig6857.3.1 ID=mRNA_P-wetherbeei_contig6857.3.1|Name=mRNA_P-wetherbeei_contig6857.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig6857:2779..3276+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGTAAGGCACTGCGTCGACCGGCAGGCACGTTCGCGGCCGGACAAGAC
CTACCTGGTCGCGCCCGAGACGGGACGTGAACTCACGTTCGCGGAGCTGA
AGCGGCAGGCGGACAACCTGTGCCGCTTCCTGCTCGGCGCCGGCTACGCG
CCCGGCGACCGGATCGGCTTCTACTGCGCGAACGGCTACCAGACCGCCGC
CGTTTTCCTCGGCACGATGTACGGCGGATACGTGTCGGTGCCGCTGAACC
TGGTTTCCCAGCCTTCCCAGCTCGAATACGTGCTCGAGCATTCCGGCACG
CGGCTGGTGTTCACCGACATGGAGCATGCCGAAGCGCTGGCGGCCCGGGT
CGAGGCGATCGGAGGCGGCATCGAGGTCATCGTGATCGACGTCGATGCGC
CCAGCCTGTTCCTCGAGGACCGCCTTCCCGCACTCGAGGCAGTTGAACCC
GGGGAGGACATGCCTGCGCTCCTGATGTACACCTCCGGCACCACGGGC
back to top