mRNA_P-wetherbeei_contig6690.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6690.4.1
Unique NamemRNA_P-wetherbeei_contig6690.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Match: A0A077ZNL9_TRITR (Uncharacterized protein n=1 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077ZNL9_TRITR)

HSP 1 Score: 162 bits (410), Expect = 7.180e-47
Identity = 96/169 (56.80%), Postives = 107/169 (63.31%), Query Frame = 1
Query:    1 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRHCCLTGPLNLPAPGRSQSVYIVLQLRTDLCFYYGGILPSSLTMVLSIALVFST*SPESVWGTGGSLLARGF--SRQHRITHFTHTGSAS-NLRLHHQVRH---GRNFAGTGISTRCPSTTPVGLALGPDLPRAD 489
            YAIRAG+NLPDKEFRYLR VIVT AVY GLNS LR  CLT PLNLPAPGR Q +Y++ +   DLCF YG  LPSSLT +L +AL FS   P SV GTG     R F  S   R+ ++     A  N RL   +     G  F G GIST C STTP GLAL P LP AD
Sbjct:   83 YAIRAGQNLPDKEFRYLRTVIVTAAVYRGLNSMLR--CLTSPLNLPAPGRRQPIYVIFRFSIDLCFCYGVNLPSSLTTLLPLALGFSPHLPVSVCGTGTLAYLRAFLASEHRRLPYYISVPYAQLNQRLGSAISKCPSGLRFGGYGISTVCASTTPCGLALAPGLPWAD 249          
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Match: A0A0K2YNZ4_9NOCA (Uncharacterized protein n=1 Tax=Rhodococcus sp. RD6.2 TaxID=260936 RepID=A0A0K2YNZ4_9NOCA)

HSP 1 Score: 130 bits (327), Expect = 9.180e-37
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRHCCLTGPLNLPAPGRSQSVYIVLQLRTDLCF 198
            YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRH  LTGPLNLPAPGR QSVYIVL+LRTDLCF
Sbjct:    8 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRHYWLTGPLNLPAPGRRQSVYIVLRLRTDLCF 73          
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Match: K9IR67_DESRO (Putative conserved protein with signal anchor (Fragment) n=1 Tax=Desmodus rotundus TaxID=9430 RepID=K9IR67_DESRO)

HSP 1 Score: 122 bits (305), Expect = 3.180e-33
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRHCCLTGPLNLPAPGRSQSVYIVLQLRTDLCF 198
            Y+IRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQL    LTGPLNLPAPGRSQSVYIVL+LRTDLCF
Sbjct:   25 YSIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLXXX-LTGPLNLPAPGRSQSVYIVLRLRTDLCF 89          
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Match: Q8CM04_COREF (Uncharacterized protein n=1 Tax=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) TaxID=196164 RepID=Q8CM04_COREF)

HSP 1 Score: 119 bits (297), Expect = 5.560e-30
Identity = 86/184 (46.74%), Postives = 99/184 (53.80%), Query Frame = 1
Query:    1 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRHCC-LTGPLNLPAPGRSQSVYIVLQLRTDLCFYYGGILPSSLTMVLSI--------------------ALVFST*SPESV----------WGTGGSL-LARGFSRQHRITHFTH---TGSASNLRLHHQVRHGRNFAGTGISTRCPSTT 447
            YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLR    LTGPLNLPAPGR QSVYI   +    C +    LPS L     +                    A   +  SPE +           G G ++ +ARGFSRQ+RIT FT    T  ASN+     +R+G  F  T   T  P +T
Sbjct:    8 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRRLTQLTGPLNLPAPGRRQSVYINFNVFARTCVFSKQSLPSILCDPHQLQKQIPSPVQAPLLPKLRGHFAEFLNHSSPERLSILYLTTCVGLGYGPNMHIARGFSRQYRITEFTPLRATHHASNI-----MRYG--FTNTSFHTLTPQST 184          
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Match: W8YNE0_9BACL (Uncharacterized protein ORF91 n=1 Tax=Paenibacillus sp. P22 TaxID=483908 RepID=W8YNE0_9BACL)

HSP 1 Score: 112 bits (279), Expect = 5.570e-29
Identity = 52/66 (78.79%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRHCCLTGPLNLPAPGRSQSVYIVLQLRTDLCF 198
            YAIRAG+NLPDKEFRYLR VIVT AVYWG  SQLR C LT PLNLPAPGR Q VY  L+LRT LCF
Sbjct:   47 YAIRAGQNLPDKEFRYLRTVIVTAAVYWGFGSQLRDCSLTAPLNLPAPGRRQPVYFALRLRTGLCF 112          
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Match: Q79VK1_COREF (Uncharacterized protein n=1 Tax=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) TaxID=196164 RepID=Q79VK1_COREF)

HSP 1 Score: 105 bits (261), Expect = 7.760e-27
Identity = 53/59 (89.83%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRHCC-LTGPLNLPAPGRSQSVYIVL 174
            YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLR    LTGPLNLPAPGR QSVYI L
Sbjct:    8 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRRLTQLTGPLNLPAPGRRQSVYINL 66          
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Match: A0A0B0HC60_9BACL (Uncharacterized protein n=1 Tax=Paenibacillus sp. P1XP2 TaxID=1472719 RepID=A0A0B0HC60_9BACL)

HSP 1 Score: 103 bits (258), Expect = 6.860e-25
Identity = 65/124 (52.42%), Postives = 68/124 (54.84%), Query Frame = 1
Query:    1 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRHCCLTGPLNLPAPGRSQSVYIVLQLRTDLCFY--------------------------YGGILPSSLTMVLSIALVFST*SPESVWGTG 294
            YAIRAG+NLPDKEFRYLR VIVT AVYWG  SQLR   LT PLNLPAPGR Q  Y         C +                          YG ILPSSLT VL  AL FS+  P SV GTG
Sbjct:   55 YAIRAGQNLPDKEFRYLRTVIVTAAVYWGFGSQLRSYSLTAPLNLPAPGRRQP-YTSPYGFAQTCVFAKQSLGPFHCGPLVLFTLPGHPFSRSYGVILPSSLTRVLPRALEFSSRLPVSVCGTG 177          
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Match: A7A2I7_BIFAD (Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 TaxID=411481 RepID=A7A2I7_BIFAD)

HSP 1 Score: 100 bits (248), Expect = 1.440e-24
Identity = 50/67 (74.63%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRHCCLTGPLNLPAPGRSQSVYIVLQLRTDLCFY 201
            YAIRAGRNLPDKEFRYLRMVIVTTAVY GLNS L    LT PLNLPAPGR Q +Y   +LR  LCF+
Sbjct:   25 YAIRAGRNLPDKEFRYLRMVIVTTAVYRGLNSPLHPEGLTDPLNLPAPGRRQCIYSGFRLRMHLCFW 91          
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Match: UPI0019932E9C (Uncharacterized protein n=1 Tax=Nocardioides deserti TaxID=1588644 RepID=UPI0019932E9C)

HSP 1 Score: 98.6 bits (244), Expect = 2.020e-24
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = -2
Query:  204 KWVILCCREKPLASNEPPVPQTDSGDQVENTKAIERTMVKELGKMPP 344
            KW+ILCCREKPLAS EPPVPQTDSGDQVENTKAIERTMVKELGKMPP
Sbjct:    7 KWMILCCREKPLASYEPPVPQTDSGDQVENTKAIERTMVKELGKMPP 53          
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Match: B0MGJ9_ANACD (Uncharacterized protein n=2 Tax=Anaerostipes caccae (strain DSM 14662 / CCUG 47493 / JCM 13470 / NCIMB 13811 / L1-92) TaxID=411490 RepID=B0MGJ9_ANACD)

HSP 1 Score: 100 bits (249), Expect = 2.580e-24
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 YAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRHCCLTGPLNLPAPGRSQSVYIVLQLRTDLCF 198
            YA RAGRNLPDKEFRYLR VIVT AVYWGL+S LR   L+ PLNLPAPGR Q +Y  L+   DLCF
Sbjct:   58 YAFRAGRNLPDKEFRYLRTVIVTAAVYWGLSSDLRANALSPPLNLPAPGRRQPIYFTLRFCIDLCF 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6690.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A077ZNL9_TRITR7.180e-4756.80Uncharacterized protein n=1 Tax=Trichuris trichiur... [more]
A0A0K2YNZ4_9NOCA9.180e-3793.94Uncharacterized protein n=1 Tax=Rhodococcus sp. RD... [more]
K9IR67_DESRO3.180e-3390.91Putative conserved protein with signal anchor (Fra... [more]
Q8CM04_COREF5.560e-3046.74Uncharacterized protein n=1 Tax=Corynebacterium ef... [more]
W8YNE0_9BACL5.570e-2978.79Uncharacterized protein ORF91 n=1 Tax=Paenibacillu... [more]
Q79VK1_COREF7.760e-2789.83Uncharacterized protein n=1 Tax=Corynebacterium ef... [more]
A0A0B0HC60_9BACL6.860e-2552.42Uncharacterized protein n=1 Tax=Paenibacillus sp. ... [more]
A7A2I7_BIFAD1.440e-2474.63Uncharacterized protein n=1 Tax=Bifidobacterium ad... [more]
UPI0019932E9C2.020e-2495.74Uncharacterized protein n=1 Tax=Nocardioides deser... [more]
B0MGJ9_ANACD2.580e-2471.21Uncharacterized protein n=2 Tax=Anaerostipes cacca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6690contigP-wetherbeei_contig6690:2569..3336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog196164.23493383
Model size489
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.99e-14
EggNOG OGs29WRJ@1|root,30ICM@2|Bacteria,2H09C@201174|Actinobacteria
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.1500518-UTR-P-wetherbeei_contig6690:2568..26791683186930.1500518-UTR-P-wetherbeei_contig6690:2568..2679Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6690 2569..2679 -
1683186930.1612942-UTR-P-wetherbeei_contig6690:2871..29821683186930.1612942-UTR-P-wetherbeei_contig6690:2871..2982Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6690 2872..2982 -
1683186930.1902587-UTR-P-wetherbeei_contig6690:3282..33361683186930.1902587-UTR-P-wetherbeei_contig6690:3282..3336Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6690 3283..3336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.174022-CDS-P-wetherbeei_contig6690:2982..30491683186930.174022-CDS-P-wetherbeei_contig6690:2982..3049Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6690 2983..3049 -
1683186930.1822848-CDS-P-wetherbeei_contig6690:3136..32821683186930.1822848-CDS-P-wetherbeei_contig6690:3136..3282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6690 3137..3282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6690.4.1prot_P-wetherbeei_contig6690.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6690 2983..3282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6690.4.1

>prot_P-wetherbeei_contig6690.4.1 ID=prot_P-wetherbeei_contig6690.4.1|Name=mRNA_P-wetherbeei_contig6690.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
MVIVTTAVYWGLNSQLRHCCLTGPLNLPAPGRSQSVYIVLQLRTDLCFYY
GGILPSSLTMVLSIALVFST*
back to top

mRNA from alignment at P-wetherbeei_contig6690:2569..3336-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6690.4.1 ID=mRNA_P-wetherbeei_contig6690.4.1|Name=mRNA_P-wetherbeei_contig6690.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig6690:2569..3336- (Phaeothamnion wetherbeei SAG_119_79)
TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT TAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTAAATTCTCAGC TTCGGCATTGCTGCCTAACCGGTCCTCTTAACCTTCCAGCACCGGGCAGG AGTCAGTCCGTATACATCGTCTTACAACTTCGCACGGACCTGTGTTTTTA GTAAACAGTCGCTTTCCCCTGGTCTCTGCGGCCCTTCACGCTCCCCCAGC AAGTGGGTTCACGATCCGGGCCCCCCTTCTCCCGAAGTTACGGGGGCATT TTGCCGAGTTCCTTAACCATGGTTCTCTCGATCGCCTTAGTATTCTCTAC TTGATCACCTGAGTCGGTTTGGGGTACGGGCGGCTCGTTGCTCGCTAGAG GTTTTTCTCGACAGCATAGGATCACCCACTTCACCCATACGGGTTCGGCA TCAAATCTCAGACTCGTCATCAAAGACAGCACCCCGGATTTACCTGGAGC ACGTCCTACATTCTTACCCGTGGACTACCATCGCCACGGTTGGGCTACCT TCCTGTGTCACCCCATCGCTTGACTACTGACCAGTTCGGGTCCCACGCTC CGCCACAACCCCGCCACCCCCGAAGGGGTCTTGGTCGTCATGGTTTCGGG TGGTTAGCATCACCAGGTTCGTCATGGGCGCAACTTCGCCGGTACGGGAA TATCAACCCGTTGTCCATCGACTACGCCTGTCGGCCTCGCCTTAGGTCCC GACTTACCCAGGGCAGAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6690:2569..3336-

>mRNA_P-wetherbeei_contig6690.4.1 ID=mRNA_P-wetherbeei_contig6690.4.1|Name=mRNA_P-wetherbeei_contig6690.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig6690:2569..3336- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTAAATTCTCAGCTTCG
GCATTGCTGCCTAACCGGTCCTCTTAACCTTCCAGCACCGGGCAGGAGTC
AGTCCGTATACATCGTCTTACAACTTCGCACGGACCTGTGTTTTTATTAC
GGGGGCATTTTGCCGAGTTCCTTAACCATGGTTCTCTCGATCGCCTTAGT
ATTCTCTACTTGA
back to top