mRNA_P-wetherbeei_contig6621.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Match: D8LQR0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR0_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 2.860e-13 Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 1
Query: 1030 AAVPTCRICLDAFRTGERLCRLPCAHDYHADCIRVWLDRRHLCPLCRLDLL 1182
+A+ C +CL+A+R G+R+CRLPCAH +HA CI WLD++H+CP CRLDLL
Sbjct: 174 SALTDCSVCLEAYRNGDRVCRLPCAHAFHASCINTWLDQQHVCPQCRLDLL 224
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Match: A0A6H5K2C2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C2_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 1.250e-12 Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 1
Query: 1030 AAVPTCRICLDAFRTGERLCRLPCAHDYHADCIRVWLDRRHLCPLCRLDLL 1182
+A+ C +CL+A+R G+R+CRLPCAH +HA CI WLD++H+CP CRLDLL
Sbjct: 309 SALTDCSVCLEAYRNGDRVCRLPCAHAFHASCINTWLDQQHVCPQCRLDLL 359
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Match: UPI00148A12AD (uncharacterized RING finger protein ECU07_0330 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A12AD) HSP 1 Score: 72.8 bits (177), Expect = 4.420e-10 Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1
Query: 1039 PTCRICLDAFRTGERLCRLPCAHDYHADCIRVWLDRRHLCPLCRLDL 1179
P CR+CL +F++G++LC LPC HDYHA C++ WL R CP+CR D+
Sbjct: 330 PGCRVCLSSFKSGDKLCTLPCKHDYHAACVKEWLKRNASCPICRHDM 376
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Match: A0A8B8CZT7_CRAVI (uncharacterized RING finger protein ECU07_0330-like n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CZT7_CRAVI) HSP 1 Score: 72.8 bits (177), Expect = 4.640e-10 Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1
Query: 1039 PTCRICLDAFRTGERLCRLPCAHDYHADCIRVWLDRRHLCPLCRLDL 1179
P CR+CL +F++G++LC LPC HDYHA C++ WL R CP+CR D+
Sbjct: 338 PGCRVCLSSFKSGDKLCTLPCKHDYHAACVKEWLKRNASCPICRHDM 384
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Match: UPI001CF99746 (uncharacterized RING finger protein C2A9.04c-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF99746) HSP 1 Score: 70.5 bits (171), Expect = 5.240e-10 Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 1045 CRICLDAFRTGERLCRLPCAHDYHADCIRVWLDRRHLCPLCRLDL 1179
C ICL+ F G+ LCRLPC+H YH DCI WL++ H CPLCR L
Sbjct: 183 CSICLEEFNVGDELCRLPCSHFYHEDCIVPWLEKSHTCPLCRFPL 227
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Match: A0A821ZK95_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821ZK95_9NEOB) HSP 1 Score: 71.6 bits (174), Expect = 1.810e-9 Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 1021 TTPAAVPTCRICLDAFRTGERLCRLPCAHDYHADCIRVWLDRRHLCPLCRLDLLA 1185
+T ++VP C ICLD F G+ L LPC+H+YH +C+ +WL H CPLC D+LA
Sbjct: 96 STSSSVPVCAICLDEFSDGQDLRILPCSHEYHLNCVDIWLKDNHTCPLCMFDILA 150
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Match: A0A6V7Q3M8_ANACO (RING-type domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7Q3M8_ANACO) HSP 1 Score: 65.5 bits (158), Expect = 3.150e-9 Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1
Query: 1045 CRICLDAFRTGERLCRLPCAHDYHADCIRVWLDRRHLCPLCR 1170
C IC+D F G RLC++PC+H +H +C+ WL+R LCPLCR
Sbjct: 82 CSICMDEFEEGARLCKIPCSHAFHEECLTRWLERSRLCPLCR 123
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Match: A0A7S3YH52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YH52_HETAK) HSP 1 Score: 62.8 bits (151), Expect = 2.570e-8 Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1
Query: 1045 CRICLDAFRTGERLCRLPCAHDYHADCIRVWLDRRHLCPLCRLDLLAYA 1191
C ICL+ F GE++C+LPC H++H C+ +WL CP CR+D+ A A
Sbjct: 72 CPICLNEFSAGEKVCQLPCLHEFHKQCVGMWLKVNATCPYCRVDMAAAA 120
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Match: A0A6P5G894_ANACO (uncharacterized protein LOC109721570 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5G894_ANACO) HSP 1 Score: 65.9 bits (159), Expect = 3.380e-8 Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 1045 CRICLDAFRTGERLCRLPCAHDYHADCIRVWLDRRHLCPLCRLDL 1179
C IC+D F G RLC++PC+H +H +C+ WL+R LCPLCR +
Sbjct: 230 CSICMDEFEEGARLCKIPCSHAFHEECLTRWLERSRLCPLCRYSI 274
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Match: A0A4S8JUT3_MUSBA (RING-type domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8JUT3_MUSBA) HSP 1 Score: 64.7 bits (156), Expect = 3.610e-8 Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query: 1045 CRICLDAFRTGERLCRLPCAHDYHADCIRVWLDRRHLCPLCRLDLLAYAG 1194
C +CL+ GE++CR+PC+H +HA C+R WL LCPLCR L A G
Sbjct: 164 CSVCLENMGRGEKVCRMPCSHVFHATCLRQWLQLSRLCPLCRFSLTADDG 213 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6621.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6621.1.1 >prot_P-wetherbeei_contig6621.1.1 ID=prot_P-wetherbeei_contig6621.1.1|Name=mRNA_P-wetherbeei_contig6621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=403bp MGANARGDAPSGRSAGAGSDGTSLGGAAFGGHGGGEQDRLEMLFAEITALback to top mRNA from alignment at P-wetherbeei_contig6621:12..2055- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6621.1.1 ID=mRNA_P-wetherbeei_contig6621.1.1|Name=mRNA_P-wetherbeei_contig6621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2044bp|location=Sequence derived from alignment at P-wetherbeei_contig6621:12..2055- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6621:12..2055- >mRNA_P-wetherbeei_contig6621.1.1 ID=mRNA_P-wetherbeei_contig6621.1.1|Name=mRNA_P-wetherbeei_contig6621.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1209bp|location=Sequence derived from alignment at P-wetherbeei_contig6621:12..2055- (Phaeothamnion wetherbeei SAG_119_79)back to top |